mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,647,612 | G→A | D384D (GAC→GAT) | oprB‑II ← | carbohydrate‑selective porin |
| RA | 1,851,242 | G→T | E96* (GAG→TAG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,273 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,275 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,964,155 | Δ1 bp | coding (1248/1476 nt) | fleQ ← | transcriptional regulator FleQ |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 4808205 | 4808258 | 54 | 20 [1] | [6] 7 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 182013 | 39 (1.270) | 16 (0.540) +TTTCG |
8/260 | 2.3 | 29.9% | intergenic (+2/+63) | PP_5SB/PP_0160 | 5S ribosomal RNA/ferrioxamine receptor |
| ? | NC_002947 | = 1330518 | NA (NA) | intergenic (+43/‑264) | PP_5SE/PP_1157 | 5S ribosomal RNA/acetolactate synthase | |||||
| * | ? | NC_002947 | = 526442 | NA (NA) | 12 (0.400) | 10/260 | 1.8 | NA | noncoding (1491/1522 nt) | PP_16SC | 16S ribosomal RNA |
| ? | NC_002947 | = 526454 | NA (NA) | noncoding (1503/1522 nt) | PP_16SC | 16S ribosomal RNA | |||||
| * | ? | NC_002947 | = 652785 | 12 (0.390) | 16 (0.610) | 15/230 | 0.8 | 75.8% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | 1114875 = | 32 (1.040) | 6 (0.240) | 5/220 | 2.7 | 21.0% | intergenic (‑64/+115) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase |
| ? | NC_002947 | 1114951 = | 19 (0.760) | intergenic (‑140/+39) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase | |||||
| * | ? | NC_002947 | 1487013 = | 15 (0.490) | 7 (0.290) | 6/210 | 2.2 | 32.1% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1487103 = | 18 (0.750) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
| * | ? | NC_002947 | = 1487042 | 14 (0.450) | 6 (0.250) | 6/210 | 2.2 | 29.3% | intergenic (+51/+79) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | = 1487072 | 18 (0.750) | intergenic (+81/+49) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
| * | ? | NC_002947 | 1499443 = | 32 (1.040) | 6 (0.230) | 6/224 | 2.4 | 20.5% | intergenic (+13/‑153) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | 1499526 = | 20 (0.780) | intergenic (+96/‑70) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
| * | ? | NC_002947 | = 2063227 | 20 (0.650) | 5 (0.200) | 5/220 | 2.7 | 21.6% | intergenic (+41/‑166) | PP_1838/PP_1839 | membrane protein/hypothetical protein |
| ? | NC_002947 | = 2063271 | 20 (0.800) | intergenic (+85/‑122) | PP_1838/PP_1839 | membrane protein/hypothetical protein | |||||
| * | ? | NC_002947 | 2295818 = | 40 (1.300) | 9 (0.360) | 7/222 | 2.1 | 23.4% | intergenic (+21/+112) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein |
| ? | NC_002947 | 2295903 = | 26 (1.030) | intergenic (+106/+27) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein | |||||
| * | ? | NC_002947 | = 4159142 | 41 (1.330) | 10 (0.370) | 10/238 | 1.6 | 21.9% | intergenic (+46/‑163) | PP_3661/PP_3662 | membrane protein/hypothetical protein |
| ? | NC_002947 | = 4159170 | 35 (1.290) | intergenic (+74/‑135) | PP_3661/PP_3662 | membrane protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 4586100 | 9 (0.290) | 14 (0.630) | 11/194 | 1.0 | 65.9% | intergenic (+139/+78) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586128 | 8 (0.360) | intergenic (+167/+50) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | 5112607 = | 33 (1.070) | 7 (0.270) | 6/226 | 2.4 | 25.2% | intergenic (‑148/+118) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein |
| ? | NC_002947 | 5112712 = | 14 (0.540) | intergenic (‑253/+13) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein | |||||
| * | ? | NC_002947 | 5201627 = | 25 (0.810) | 5 (0.220) | 5/196 | 2.4 | 28.4% | intergenic (‑65/‑115) | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| ? | NC_002947 | 5201722 = | 7 (0.310) | intergenic (‑160/‑20) | PP_4582/PP_4583 | membrane protein/putative Peptidase | |||||
| * | ? | NC_002947 | = 5513315 | 30 (0.970) | 10 (0.400) | 9/218 | 1.6 | 29.8% | intergenic (+45/‑109) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 5513371 | 23 (0.920) | intergenic (+101/‑53) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein | |||||
| * | ? | NC_002947 | = 5594170 | 23 (0.750) | 6 (0.250) | 5/214 | 2.6 | 21.7% | intergenic (‑66/+79) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase |
| ? | NC_002947 | = 5594207 | 25 (1.020) | intergenic (‑103/+42) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
| * | ? | NC_002947 | 5759460 = | 14 (0.450) | 9 (0.380) | 8/206 | 1.7 | 36.2% | intergenic (+13/+143) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | 5759552 = | 21 (0.890) | intergenic (+105/+51) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
| * | ? | NC_002947 | = 5759491 | 14 (0.450) | 5 (0.210) | 5/206 | 2.5 | 24.0% | intergenic (+44/+112) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | = 5759519 | 21 (0.890) | intergenic (+72/+84) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
| * | ? | NC_002947 | = 5903825 | 35 (1.140) | 7 (0.250) | 7/250 | 2.4 | 20.5% | intergenic (+25/+82) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
| ? | NC_002947 | = 5903887 | 22 (0.770) | intergenic (+87/+20) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | NC_002947 | 5903827 = | 35 (1.140) | 7 (0.260) | 6/238 | 2.6 | 20.9% | intergenic (+27/+80) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
| ? | NC_002947 | 5903887 = | 22 (0.810) | intergenic (+87/+20) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | NC_002947 | 6027949 = | 37 (1.200) | 8 (0.310) | 6/228 | 2.5 | 24.5% | intergenic (‑37/+74) | PP_5277/kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
| ? | NC_002947 | 6028006 = | 18 (0.690) | intergenic (‑94/+17) | PP_5277/kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase | |||||