breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 27,581 C→T 15.4% intergenic (‑428/+18) PP_0022 ← / ← PP_0023 hypothetical protein/hypothetical protein
RA 27,584 A→G 13.6% intergenic (‑431/+15) PP_0022 ← / ← PP_0023 hypothetical protein/hypothetical protein
RA 35,009 A→G 15.9% intergenic (+27/+31) czrSA → / ← PP_0031 metal‑sensor histidine kinase/hypothetical protein
RA 35,012 C→T 15.6% intergenic (+30/+28) czrSA → / ← PP_0031 metal‑sensor histidine kinase/hypothetical protein
RA 43,457 Δ1 bp 14.0% intergenic (+23/+70) PP_0040 → / ← cadA‑I hypothetical protein/cadmium translocating P‑type ATPase
RA 43,461:1 +A 15.0% intergenic (+27/+66) PP_0040 → / ← cadA‑I hypothetical protein/cadmium translocating P‑type ATPase
RA 58,747 T→A 8.3% intergenic (‑658/+30) PP_5424 ← / ← PP_0050 hypothetical protein/hypothetical protein
RA 58,750 T→A 8.3% intergenic (‑661/+27) PP_5424 ← / ← PP_0050 hypothetical protein/hypothetical protein
RA 59,270 T→C 9.0% intergenic (‑86/+46) PP_0050 ← / ← PP_0051 hypothetical protein/sigma‑54 dependent transcriptional regulator
RA 86,240 G→T 24.0% L160M (CTG→ATG)  PP_0075 ← choline sulfate transporter
RA 86,245 A→C 20.7% M158R (ATG→AGG)  PP_0075 ← choline sulfate transporter
RA 87,493 T→A 10.5% N98I (AAT→ATT)  PP_0076 ← choline betaine‑binding protein
RA 92,066 G→T 10.0% P105H (CCT→CAT)  trpA ← tryptophan synthase subunit alpha
RA 115,909 G→A 7.5% R71Q (CGG→CAG)  PP_0110 → CyoE‑like protoheme IX farnesyltransferase
RA 115,916 T→C 9.1% I73I (ATT→ATC)  PP_0110 → CyoE‑like protoheme IX farnesyltransferase
RA 115,917 G→A 9.1% D74N (GAT→AAT)  PP_0110 → CyoE‑like protoheme IX farnesyltransferase
RA 126,115 A→G 7.5% intergenic (+25/+25) PP_0120 → / ← thrB zinc ABC transporter/homoserine kinase
RA 126,116 C→T 7.5% intergenic (+26/+24) PP_0120 → / ← thrB zinc ABC transporter/homoserine kinase
RA 146,127 T→A 13.9% intergenic (+32/‑116) gltP → / → PP_0138 glutamate/aspartate‑proton DAACS transporter/membrane protein
RA 146,128 T→A 14.0% intergenic (+33/‑115) gltP → / → PP_0138 glutamate/aspartate‑proton DAACS transporter/membrane protein
RA 181,943 C→T 20.9% noncoding (52/120 nt) PP_5SB → 5S ribosomal RNA
RA 195,559 C→A 16.7% T355T (ACC→ACA)  PP_0168 → putative surface adhesion protein
RA 195,628 C→T 9.1% D378D (GAC→GAT)  PP_0168 → putative surface adhesion protein
RA 195,629 A→G 7.9% T379A (ACC→GCC)  PP_0168 → putative surface adhesion protein
RA 195,634 C→T 32.8% T380T (ACC→ACT)  PP_0168 → putative surface adhesion protein
RA 196,306 T→C 38.0% N604N (AAT→AAC)  PP_0168 → putative surface adhesion protein
RA 196,327 A→C 41.6% T611T (ACA→ACC)  PP_0168 → putative surface adhesion protein
RA 196,351 C→G 48.1% T619T (ACC→ACG)  PP_0168 → putative surface adhesion protein
RA 196,390 T→C 47.5% D632D (GAT→GAC)  PP_0168 → putative surface adhesion protein
RA 196,795 G→C 11.9% T767T (ACG→ACC)  PP_0168 → putative surface adhesion protein
RA 196,879 G→A 24.7% V795V (GTG→GTA)  PP_0168 → putative surface adhesion protein
RA 197,032 C→T 6.1% T846T (ACC→ACT)  PP_0168 → putative surface adhesion protein
RA 197,089 T→C 12.2% N865N (AAT→AAC)  PP_0168 → putative surface adhesion protein
RA 197,179 A→G 6.5% V895V (GTA→GTG)  PP_0168 → putative surface adhesion protein
RA 197,551 C→G 16.3% T1019T (ACC→ACG)  PP_0168 → putative surface adhesion protein
RA 197,572 G→A 27.0% K1026K (AAG→AAA)  PP_0168 → putative surface adhesion protein
RA 197,590 T→C 31.3% D1032D (GAT→GAC)  PP_0168 → putative surface adhesion protein
RA 197,632 T→C 20.2% T1046T (ACT→ACC)  PP_0168 → putative surface adhesion protein
RA 197,695 G→C 31.7% T1067T (ACG→ACC)  PP_0168 → putative surface adhesion protein
RA 205,930 T→A 7.0% V3812V (GTT→GTA)  PP_0168 → putative surface adhesion protein
RA 244,829 A→G 16.2% T169A (ACG→GCG)  algP → transcriptional regulator AlgP
RA 247,399 G→C 9.5% S526T (AGT→ACT)  yheS → ABC transporter ATP‑binding protein
RA 274,921 G→T 6.9% Q343K (CAG→AAG)  PP_0222 ← DszA family monooxygenase
RA 294,514 G→T 8.9% K237N (AAG→AAT)  ssuC → aliphatic sulfonatesABC transporter permease
RA 294,515 A→C 8.1% I238L (ATT→CTT)  ssuC → aliphatic sulfonatesABC transporter permease
RA 295,759 T→G 6.0% intergenic (+106/+36) PP_0241 → / ← PP_0242 transporter/TetR family transcriptional regulator
RA 295,764 C→G 5.7% intergenic (+111/+31) PP_0241 → / ← PP_0242 transporter/TetR family transcriptional regulator
RA 321,742 T→C 11.1% intergenic (+27/+431) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 321,743 G→A 11.2% intergenic (+28/+430) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 322,135 G→A 36.1% intergenic (+420/+38) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 322,142 T→C 35.0% intergenic (+427/+31) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 337,839 C→T 23.8% intergenic (‑86/+43) PP_0279 ← / ← PP_0280 hypothetical protein/amino acid ABC transporter permease
RA 395,849 Δ1 bp 14.3% intergenic (+28/+176) fdhA → / ← PP_0329 formaldehyde dehydrogenase/hypothetical protein
RA 395,851:1 +G 14.3% intergenic (+30/+174) fdhA → / ← PP_0329 formaldehyde dehydrogenase/hypothetical protein
RA 395,861 T→C 14.8% intergenic (+40/+164) fdhA → / ← PP_0329 formaldehyde dehydrogenase/hypothetical protein
RA 417,375 C→T 9.9% P361L (CCG→CTG)  waaG → lipopolysaccharide glucosyltransferase I
RA 417,378 A→G 9.5% Q362R (CAG→CGG)  waaG → lipopolysaccharide glucosyltransferase I
RA 459,902 C→T 8.7% intergenic (‑45/+34) pqqB ← / ← pqqA coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA 459,907 A→C 8.5% intergenic (‑50/+29) pqqB ← / ← pqqA coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA 459,908 G→T 9.1% intergenic (‑51/+28) pqqB ← / ← pqqA coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA 459,913 A→G 9.1% intergenic (‑56/+23) pqqB ← / ← pqqA coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A
RA 503,816 A→G 8.9% intergenic (+16/‑135) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 503,828 Δ1 bp 13.5% intergenic (+28/‑123) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 503,834 A→T 13.2% intergenic (+34/‑117) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 503,835 A→T 13.2% intergenic (+35/‑116) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 503,840:1 +C 13.0% intergenic (+40/‑111) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 503,852 C→T 8.2% intergenic (+52/‑99) PP_0414 → / → rpe polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA 541,440 A→G 10.0% Q1272R (CAG→CGG)  rpoB → DNA‑directed RNA polymerase subunit beta
RA 541,443 C→T 8.3% P1273L (CCG→CTG)  rpoB → DNA‑directed RNA polymerase subunit beta
RA 550,552 C→G 9.1% intergenic (+30/‑112) tufB → / → rpsJ elongation factor Tu‑B/30S ribosomal protein S10
RA 550,760 G→A 45.9% G33S (GGT→AGT)  rpsJ → 30S ribosomal protein S10
RA 554,197 A→G 20.1% D45G (GAT→GGT)  rpsC → 30S ribosomal protein S3
RA 576,552 G→T 10.0% W529L (TGG→TTG)  fdoG → formate dehydrogenase‑O major subunit
RA 594,198 A→G 11.7% intergenic (‑56/+54) oprG ← / ← PP_0505 outer membrane protein OprG/hypothetical protein
RA 697,217 T→C 17.7% intergenic (+141/‑610) mmsA‑I → / → PP_16SD methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA 697,228 C→G 15.5% intergenic (+152/‑599) mmsA‑I → / → PP_16SD methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA 697,231 C→G 15.6% intergenic (+155/‑596) mmsA‑I → / → PP_16SD methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA 697,242 G→A 9.7% intergenic (+166/‑585) mmsA‑I → / → PP_16SD methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA 699,725 A→G 51.5% intergenic (+115/‑129) PP_t06 → / → PP_23SD tRNA‑Ala/23S ribosomal RNA
RA 709,861 C→G 17.9% A201A (GCC→GCG)  ribF → bifunctional riboflavin kinase/FMN adenylyltransferase
RA 709,862 C→G 18.4% R202G (CGC→GGC)  ribF → bifunctional riboflavin kinase/FMN adenylyltransferase
RA 739,392 T→A 12.2% E9D (GAA→GAT) ‡ pilD ← leader peptidase/N‑methyltransferase
RA 739,393 T→A 9.7% E9V (GAA→GTA) ‡ pilD ← leader peptidase/N‑methyltransferase
RA 743,433 G→A 7.1% intergenic (+109/+165) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,435 A→C 7.0% intergenic (+111/+163) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,442 T→G 7.0% intergenic (+118/+156) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,443 T→A 7.1% intergenic (+119/+155) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,453 T→C 6.8% intergenic (+129/+145) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,463 A→G 6.6% intergenic (+139/+135) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 811,443 T→C 11.7% Q271R (CAG→CGG) ‡ PP_0698 ← LysR family transcriptional regulator
RA 811,444 G→A 12.1% Q271* (CAG→TAG) ‡ PP_0698 ← LysR family transcriptional regulator
RA 838,006 Δ1 bp 13.8% intergenic (‑39/+41) pth ← / ← rplY peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA 838,010:1 +C 13.8% intergenic (‑43/+37) pth ← / ← rplY peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA 839,209 C→T 8.3% L164L (CTG→CTA)  prs ← ribose‑phosphate pyrophosphokinase
RA 882,022 G→T 8.5% A512S (GCC→TCC)  PP_0765 → hypothetical protein
RA 904,251 G→A 9.1% L169L (CTG→CTA)  PP_0788 → hypothetical protein
RA 908,132 C→G 8.0% A28P (GCG→CCG)  yjjV ← putative hydrolase
RA 908,135 C→G 8.1% A27P (GCG→CCG)  yjjV ← putative hydrolase
RA 949,560 G→A 13.8% P133P (CCG→CCA)  dsbB → disulfide bond formation protein B
RA 1,013,231 A→T 14.3% intergenic (+56/+75) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,013,237 C→A 20.8% intergenic (+62/+69) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,013,238 A→T 20.8% intergenic (+63/+68) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,013,244 G→C 20.2% intergenic (+69/+62) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,013,245 G→C 20.8% intergenic (+70/+61) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,013,251 A→T 20.0% intergenic (+76/+55) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,013,252 T→G 21.6% intergenic (+77/+54) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,013,258 A→T 20.9% intergenic (+83/+48) prfC → / ← potF‑I peptide chain release factor 3/putrescine‑binding protein
RA 1,046,230 C→G 7.9% M717I (ATG→ATC)  PP_0906 ← RND family multidrug transporter
RA 1,046,233 C→G 7.4% S716S (TCG→TCC)  PP_0906 ← RND family multidrug transporter
RA 1,114,354 T→A 22.0% N153I (AAT→ATT)  rlmF ← ribosomal RNA large subunit methyltransferase F
RA 1,145,439 C→T 10.7% intergenic (‑100/+41) hemO ← / ← PP_1006 heme oxygenase/heme receptor
RA 1,145,446 G→A 9.1% intergenic (‑107/+34) hemO ← / ← PP_1006 heme oxygenase/heme receptor
RA 1,145,447 T→C 9.5% intergenic (‑108/+33) hemO ← / ← PP_1006 heme oxygenase/heme receptor
RA 1,178,716 C→T 11.8% intergenic (+15/+79) guaA → / ← PP_1033 glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA 1,178,717 A→G 11.9% intergenic (+16/+78) guaA → / ← PP_1033 glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA 1,178,892 T→G 12.1% Q631P (CAA→CCA)  PP_1033 ← sulfatase domain‑containing protein
RA 1,192,686 T→C 8.1% K324E (AAA→GAA)  upxB ← phosphatase
RA 1,192,691 G→T 8.8% T322N (ACC→AAC)  upxB ← phosphatase
RA 1,192,694 A→C 10.4% V321G (GTT→GGT)  upxB ← phosphatase
RA 1,207,680 G→A 9.3% L443L (CTG→TTG)  PP_1058 ← hypothetical protein
RA 1,207,681 T→C 9.1% Q442Q (CAA→CAG)  PP_1058 ← hypothetical protein
RA 1,226,183 T→A 13.3% D105V (GAC→GTC)  gltI ← glutamate/aspartate ABC transporter substrate‑binding protein
RA 1,239,106 G→T 13.3% intergenic (‑75/‑300) argF ← / → PP_1080 ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase
RA 1,239,109 A→C 16.0% intergenic (‑78/‑297) argF ← / → PP_1080 ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase
RA 1,265,530 C→A 12.9% intergenic (‑105/+22) PP_1106 ← / ← quiP hypothetical protein/acyl‑homoserine lactone acylase QuiP
RA 1,281,134 T→C 18.9% V176A (GTC→GCC)  PP_5742 → membrane protein
RA 1,295,019 Δ1 bp 21.4% intergenic (+29/+41) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,024 T→A 20.7% intergenic (+34/+36) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,027 T→A 21.1% intergenic (+37/+33) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,031:1 +T 20.7% intergenic (+41/+29) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,327,127 C→T 56.7% intergenic (+97/‑196) PP_16SE → / → PP_23SE 16S ribosomal RNA/23S ribosomal RNA
RA 1,330,507 G→A 8.9% intergenic (+32/‑275) PP_5SE → / → PP_1157 5S ribosomal RNA/acetolactate synthase
RA 1,382,332 A→T 14.9% intergenic (+12/+15) dinB → / ← PP_1204 DNA polymerase IV/lipoprotein
RA 1,403,596 G→A 36.5% intergenic (‑56/+25) PP_1227 ← / ← PP_1228 membrane protein/methyl‑accepting chemotaxis transducer
RA 1,403,597 T→C 36.1% intergenic (‑57/+24) PP_1227 ← / ← PP_1228 membrane protein/methyl‑accepting chemotaxis transducer
RA 1,458,124 T→G 13.8% intergenic (+17/+23) PP_1276 → / ← algA hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA 1,458,126 A→T 13.8% intergenic (+19/+21) PP_1276 → / ← algA hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA 1,458,128 C→A 13.8% intergenic (+21/+19) PP_1276 → / ← algA hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA 1,498,379 C→A 13.7% A100D (GCC→GAC)  trpS → tryptophan‑‑tRNA ligase
RA 1,506,936 G→A 18.2% intergenic (+48/‑69) petC → / → sspA ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA 1,506,939 T→C 19.1% intergenic (+51/‑66) petC → / → sspA ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA 1,506,943 C→T 19.0% intergenic (+55/‑62) petC → / → sspA ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA 1,509,433 T→G 13.7% H110P (CAT→CCT)  PP_1324 ← endonuclease
RA 1,509,437 G→A 13.8% H109Y (CAC→TAC)  PP_1324 ← endonuclease
RA 1,509,440 T→C 14.8% S108G (AGC→GGC)  PP_1324 ← endonuclease
RA 1,509,444 C→A 14.8% Q106H (CAG→CAT)  PP_1324 ← endonuclease
RA 1,511,112 T→A 17.9% pseudogene (497/1851 nt) PP_1325 ← putative lipoprotein
RA 1,522,888 C→T 12.1% R252C (CGT→TGT)  ftsW → lipid II flippase
RA 1,544,531 C→A 14.3% intergenic (+48/+66) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,534 G→C 14.3% intergenic (+51/+63) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,536 C→G 14.3% intergenic (+53/+61) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,541 C→G 14.3% intergenic (+58/+56) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,543 G→C 14.3% intergenic (+60/+54) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,544,546 T→G 12.5% intergenic (+63/+51) mdfA → / ← ampG multidrug MFS transporter/muropeptide permease AmpG
RA 1,551,324 G→T 17.2% intergenic (+41/+85) groL → / ← pykA chaperonin GroEL/pyruvate kinase II
RA 1,551,327 A→C 16.7% intergenic (+44/+82) groL → / ← pykA chaperonin GroEL/pyruvate kinase II
RA 1,592,024 C→A 24.4% intergenic (‑89/‑114) PP_1395 ← / → PP_1396 AraC family transcriptional regulator/hypothetical protein
RA 1,592,029 T→G 21.9% intergenic (‑94/‑109) PP_1395 ← / → PP_1396 AraC family transcriptional regulator/hypothetical protein
RA 1,625,249 G→T 17.8% intergenic (+30/+27) PP_1425 → / ← nadB hypothetical protein/L‑aspartate oxidase
RA 1,625,250 A→C 17.9% intergenic (+31/+26) PP_1425 → / ← nadB hypothetical protein/L‑aspartate oxidase
RA 1,639,607 A→G 14.3% intergenic (‑155/‑156) czcR‑III ← / → PP_1439 response regulator/hypothetical protein
RA 1,647,612 G→A 100% D384D (GAC→GAT)  oprB‑II ← carbohydrate‑selective porin
RA 1,691,838 C→G 14.2% intergenic (+63/‑108) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,839 G→A 14.7% intergenic (+64/‑107) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,786,064 T→A 19.2% intergenic (+38/‑148) rpsB → / → tsf 30S ribosomal protein S2/elongation factor Ts
RA 1,786,065 T→A 19.2% intergenic (+39/‑147) rpsB → / → tsf 30S ribosomal protein S2/elongation factor Ts
RA 1,786,066 T→A 19.2% intergenic (+40/‑146) rpsB → / → tsf 30S ribosomal protein S2/elongation factor Ts
RA 1,846,339 Δ1 bp 10.8% coding (588/1377 nt) pfeS‑II → histidine kinase
RA 1,846,345:1 +A 11.4% coding (594/1377 nt) pfeS‑II → histidine kinase
RA 1,851,242 G→T 100% E96* (GAG→TAG)  relA → ATP:GTP 3'‑pyrophosphotransferase
RA 1,921,591 T→A 20.6% intergenic (+24/+37) PP_1720 → / ← PP_1721 alcohol dehydrogenase/phosphoserine phosphatase
RA 1,921,592 T→A 20.8% intergenic (+25/+36) PP_1720 → / ← PP_1721 alcohol dehydrogenase/phosphoserine phosphatase
RA 1,970,236 G→A 8.7% L188L (CTG→CTA)  mtnA → methylthioribose‑1‑phosphate isomerase
RA 2,092,423 G→A 18.5% intergenic (+26/+65) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,425 T→C 16.0% intergenic (+28/+63) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,428 G→A 15.8% intergenic (+31/+60) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,430 T→C 14.7% intergenic (+33/+58) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,103,203 C→G 15.6% noncoding (35/76 nt) PP_t24 → tRNA‑Gly
RA 2,135,562 G→A 10.0% A411V (GCG→GTG)  fadE ← medium‑long chain acyl‑CoA dehydrogenase
RA 2,154,429 T→G 10.0% Q129P (CAG→CCG)  PP_1909 ← septum formation protein
RA 2,154,434 T→A 10.0% Q127H (CAA→CAT)  PP_1909 ← septum formation protein
RA 2,154,439 C→A 9.7% G126W (GGG→TGG)  PP_1909 ← septum formation protein
RA 2,273,105 C→G 30.8% intergenic (+27/+264) PP_2003 → / ← PP_2004 hypothetical protein/AraC family transcriptional regulator
RA 2,273,109 A→T 25.5% intergenic (+31/+260) PP_2003 → / ← PP_2004 hypothetical protein/AraC family transcriptional regulator
RA 2,273,113 C→G 24.2% intergenic (+35/+256) PP_2003 → / ← PP_2004 hypothetical protein/AraC family transcriptional regulator
RA 2,273,123 C→T 20.1% intergenic (+45/+246) PP_2003 → / ← PP_2004 hypothetical protein/AraC family transcriptional regulator
RA 2,305,896 A→C 11.1% V235G (GTG→GGG)  PP_2028 ← TPR repeat‑containing protein
RA 2,308,947 C→T 12.9% G56S (GGC→AGC)  PP_2031 ← hypothetical protein
RA 2,308,952 C→G 12.9% G54A (GGG→GCG) ‡ PP_2031 ← hypothetical protein
RA 2,308,953 C→G 12.9% G54R (GGG→CGG) ‡ PP_2031 ← hypothetical protein
RA 2,308,958 A→G 11.4% L52P (CTG→CCG)  PP_2031 ← hypothetical protein
RA 2,308,961 T→G 10.6% K51T (AAG→ACG)  PP_2031 ← hypothetical protein
RA 2,458,108 G→C 16.7% intergenic (+137/‑68) PP_2150 → / → sthA thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA 2,458,113 C→G 16.7% intergenic (+142/‑63) PP_2150 → / → sthA thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA 2,458,114 C→G 16.7% intergenic (+143/‑62) PP_2150 → / → sthA thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA 2,458,119 G→C 16.7% intergenic (+148/‑57) PP_2150 → / → sthA thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA 2,490,773 C→G 12.9% G51G (GGC→GGG)  PP_2185 → formate dehydrogenase subunit alpha
RA 2,490,774 A→C 12.5% T52P (ACC→CCC)  PP_2185 → formate dehydrogenase subunit alpha
RA 2,571,621 C→T 12.9% G287S (GGC→AGC)  dctA‑III ← C4‑dicarboxylate transport protein
RA 2,633,500 T→G 17.4% intergenic (+100/‑82) hupB → / → PP_2304 DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA 2,633,501 C→A 17.4% intergenic (+101/‑81) hupB → / → PP_2304 DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA 2,669,714 T→G 16.7% intergenic (+38/+37) prpD → / ← acnB 2‑methylcitrate dehydratase/aconitate hydratase B
RA 2,669,717 C→A 15.4% intergenic (+41/+34) prpD → / ← acnB 2‑methylcitrate dehydratase/aconitate hydratase B
RA 2,717,779 G→T 12.5% intergenic (+150/‑45) cti → / → PP_2377 esterified fatty acid cis/trans isomerase/acyltransferase
RA 2,788,115 C→T 14.8% P132L (CCG→CTG)  ahpF → alkyl hydroperoxide reductase subunit F
RA 2,788,121 T→A 16.0% V134D (GTC→GAC)  ahpF → alkyl hydroperoxide reductase subunit F
RA 2,788,127 A→G 15.4% Q136R (CAG→CGG)  ahpF → alkyl hydroperoxide reductase subunit F
RA 2,790,201 G→T 20.2% S30R (AGC→AGA)  PP_2442 ← DUF480 domain‑containing protein
RA 2,859,192 G→A 14.8% C127Y (TGT→TAT) ‡ PP_2511 → hypothetical protein
RA 2,859,193 T→C 14.3% C127C (TGT→TGC) ‡ PP_2511 → hypothetical protein
RA 2,867,432 T→C 26.7% intergenic (‑613/‑956) glllA ← / → PP_2520 gallate dioxygenase/hypothetical protein
RA 2,875,792 A→G 11.1% L45P (CTG→CCG)  PP_2528 ← O‑acetylhomoserine (thiol)‑lyase
RA 2,910,903 A→T 18.2% intergenic (‑423/‑121) aprDA ← / → PP_2561 alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin
RA 2,910,906 A→T 16.0% intergenic (‑426/‑118) aprDA ← / → PP_2561 alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin
RA 2,951,377 G→C 24.0% intergenic (‑113/+48) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,951,384 A→C 26.1% intergenic (‑120/+41) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,951,385 G→T 26.1% intergenic (‑121/+40) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,951,392 G→C 26.1% intergenic (‑128/+33) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,960,847 C→A 17.8% E130* (GAA→TAA)  PP_2590 ← ferric siderophore receptor
RA 2,989,258 G→T 15.0% R43R (CGG→AGG)  PP_2613 ← hypothetical protein
RA 2,989,261 A→C 15.0% Y42D (TAT→GAT)  PP_2613 ← hypothetical protein
RA 3,044,525 G→A 28.6% P8P (CCG→CCA)  pstC → phosphate ABC transporter permease
RA 3,126,899 G→C 13.3% A190G (GCC→GGC)  PP_2744 ← ribose‑phosphate pyrophosphokinase family protein
RA 3,129,843 C→A 30.3% P349P (CCC→CCA)  dmoA‑I → dimethyl‑sulfide monooxygenase
RA 3,146,654 T→C 31.5% intergenic (+47/+19) PP_2761 → / ← sfnA ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA 3,146,657 G→A 30.1% intergenic (+50/+16) PP_2761 → / ← sfnA ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA 3,237,369 G→A 12.9% G274S (GGC→AGC)  PP_2835 → putative oxidoreductase
RA 3,354,452 C→A 8.5% Y218* (TAC→TAA)  PP_2949 → permease
RA 3,460,269 Δ1 bp 12.1% coding (136/1446 nt) PP_3075 ← transcriptional regulator
RA 3,460,273:1 +A 12.1% coding (132/1446 nt) PP_3075 ← transcriptional regulator
RA 3,498,534 C→T 16.6% L121L (CTG→CTA)  PP_5563 ← membrane protein
RA 3,726,458 T→G 14.5% F356L (TTT→TTG)  PP_3291 → metallo‑beta‑lactamase family protein
RA 3,726,459 C→A 13.8% Q357K (CAA→AAA)  PP_3291 → metallo‑beta‑lactamase family protein
RA 3,758,300:1 +A 11.8% coding (570/1002 nt) hemBB → porphobilinogen synthase
RA 3,758,305 Δ1 bp 11.4% coding (575/1002 nt) hemBB → porphobilinogen synthase
RA 3,785,536 G→T 13.9% A230S (GCT→TCT)  PP_3348 → GGDEF domain‑containing protein
RA 3,852,080 T→C 19.2% V343A (GTC→GCC)  PP_3399 → minor curlin subunit CsgB
RA 3,881,873 A→T 16.0% Q163L (CAG→CTG)  oprN → multidrug RND transporter outer membrane protein OprN
RA 3,881,884 A→G 17.3% S167G (AGC→GGC)  oprN → multidrug RND transporter outer membrane protein OprN
RA 3,996,941 G→T 19.4% P89H (CCT→CAT)  PP_3525 ← hypothetical protein
RA 3,996,944 A→C 19.3% M88R (ATG→AGG)  PP_3525 ← hypothetical protein
RA 4,025,534 C→T 19.9% G70D (GGC→GAC)  emrA ← multidrug transporter membrane fusion protein
RA 4,049,645 A→T 14.2% K718* (AAG→TAG) ‡ quiA → quinate dehydrogenase
RA 4,049,646 A→T 13.5% K718M (AAG→ATG) ‡ quiA → quinate dehydrogenase
RA 4,049,951 A→G 24.3% intergenic (+40/‑61) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,049,954 C→G 24.2% intergenic (+43/‑58) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,049,957 C→T 24.3% intergenic (+46/‑55) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,120,082 G→A 19.0% A152T (GCG→ACG)  adhB → alcohol dehydrogenase cytochrome c subunit
RA 4,155,334 C→T 14.3% G68G (GGG→GGA) ‡ PP_3658 ← aromatic compound MFS transporter
RA 4,155,336 C→G 14.3% G68R (GGG→CGG) ‡ PP_3658 ← aromatic compound MFS transporter
RA 4,155,338 A→G 12.9% F67S (TTC→TCC)  PP_3658 ← aromatic compound MFS transporter
RA 4,162,765 C→A 12.5% L247L (CTG→CTT)  pssA ← CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA 4,188,015:1 +A 11.8% intergenic (+76/‑134) PP_3683 → / → PP_3684 hypothetical protein/hypothetical protein
RA 4,188,018 Δ1 bp 11.4% intergenic (+79/‑131) PP_3683 → / → PP_3684 hypothetical protein/hypothetical protein
RA 4,252,234 A→G 27.3% intergenic (‑158/+82) PP_3726 ← / ← rocE enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA 4,252,238 C→A 25.5% intergenic (‑162/+78) PP_3726 ← / ← rocE enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA 4,252,241 A→G 26.1% intergenic (‑165/+75) PP_3726 ← / ← rocE enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA 4,252,246 G→C 28.5% intergenic (‑170/+70) PP_3726 ← / ← rocE enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA 4,330,680 C→T 11.1% R28C (CGC→TGC)  PP_3802 → cation ABC transporter ATP‑binding protein
RA 4,338,537 A→T 12.5% intergenic (+113/+29) PP_3812 → / ← PP_5632 lipase/allo‑isoleucine metabolism protein
RA 4,338,538 A→T 12.5% intergenic (+114/+28) PP_3812 → / ← PP_5632 lipase/allo‑isoleucine metabolism protein
RA 4,348,749 A→G 45.2% intergenic (‑70/+404) PP_3820 ← / ← galU group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA 4,372,499 A→G 14.9% intergenic (‑1040/‑532) PP_5636 ← / → PP_3849 hypothetical protein/hemolysin‑type calcium‑binding protein
RA 4,449,607 A→G 8.3% intergenic (+78/‑364) nicR → / → nicA HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
RA 4,470,272 A→C 9.3% V321G (GTG→GGG)  PP_3961 ← transporter
RA 4,470,276 T→C 9.8% I320V (ATC→GTC)  PP_3961 ← transporter
RA 4,470,281 G→A 10.9% T318I (ACC→ATC)  PP_3961 ← transporter
RA 4,470,285 G→T 12.7% P317T (CCG→ACG)  PP_3961 ← transporter
RA 4,541,821:1 +G 10.3% coding (494/1503 nt) nhaB → Na(+)/H(+) antiporter NhaB
RA 4,541,825 Δ1 bp 10.3% coding (498/1503 nt) nhaB → Na(+)/H(+) antiporter NhaB
RA 4,632,641 G→C 18.3% noncoding (35/76 nt) PP_t59 ← tRNA‑Gly
RA 4,645,521 G→A 7.2% G14S (GGC→AGC)  fusB → elongation factor G 2
RA 4,666,126 G→A 12.5% A51T (GCC→ACC)  nuoK → NADH‑quinone oxidoreductase subunit K
RA 4,741,273:1 +C 100% intergenic (+464/+288) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,275 A→G 100% intergenic (+466/+286) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,277 C→T 100% intergenic (+468/+284) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,280 C→T 100% intergenic (+471/+281) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283 C→G 100% intergenic (+474/+278) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,285 2 bp→CT 100% intergenic (+476/+275) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,298:1 +T 68.4% intergenic (+489/+263) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,299 C→T 31.3% intergenic (+490/+262) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,301 A→C 30.4% intergenic (+492/+260) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,302 A→G 68.8% intergenic (+493/+259) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,304 C→G 31.5% intergenic (+495/+257) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,305 Δ1 bp 68.4% intergenic (+496/+256) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,765,973 C→G 9.8% A194G (GCG→GGG)  fpvA → TonB‑dependent outer membrane ferripyoverdine receptor FpvA
RA 4,765,978 C→G 9.8% P196A (CCG→GCG)  fpvA → TonB‑dependent outer membrane ferripyoverdine receptor FpvA
RA 4,796,649 A→G 25.6% intergenic (‑162/+56) pvdH ← / ← PP_4224 diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA 4,796,657 C→T 27.3% intergenic (‑170/+48) pvdH ← / ← PP_4224 diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA 4,796,659 G→C 27.3% intergenic (‑172/+46) pvdH ← / ← PP_4224 diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA 4,796,662 G→C 25.0% intergenic (‑175/+43) pvdH ← / ← PP_4224 diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA 4,796,664 A→G 25.0% intergenic (‑177/+41) pvdH ← / ← PP_4224 diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA 4,796,672 C→T 25.9% intergenic (‑185/+33) pvdH ← / ← PP_4224 diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA 4,796,966 G→A 10.4% G354G (GGC→GGT)  PP_4224 ← sensor histidine kinase
RA 4,812,229 A→T 12.5% intergenic (+104/‑289) PP_4238 → / → PP_5665 hypothetical protein/McbA family microcin B17‑like processing protein
RA 4,832,099 A→T 15.1% intergenic (+29/+123) pvdS → / ← pvdY alternative sigma factor/hydroxyproline acetylase
RA 4,832,102 T→A 15.2% intergenic (+32/+120) pvdS → / ← pvdY alternative sigma factor/hydroxyproline acetylase
RA 4,832,105 A→T 15.2% intergenic (+35/+117) pvdS → / ← pvdY alternative sigma factor/hydroxyproline acetylase
RA 4,832,113 C→G 15.1% intergenic (+43/+109) pvdS → / ← pvdY alternative sigma factor/hydroxyproline acetylase
RA 4,832,116 T→G 14.3% intergenic (+46/+106) pvdS → / ← pvdY alternative sigma factor/hydroxyproline acetylase
RA 4,842,941 Δ1 bp 22.9% intergenic (+40/‑257) ccoP‑II → / → PP_4259 cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA 4,842,949:1 +G 27.5% intergenic (+48/‑249) ccoP‑II → / → PP_4259 cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA 4,865,592 C→A 12.5% R109L (CGC→CTC)  smc ← chromosome partition protein Smc
RA 4,868,154 T→G 9.3% C436G (TGC→GGC)  xdhA → xanthine dehydrogenase subunit XdhA
RA 4,868,161 C→G 10.0% A438G (GCC→GGC)  xdhA → xanthine dehydrogenase subunit XdhA
RA 4,871,304 C→G 10.8% P164A (CCC→GCC) ‡ xdhC → xanthine dehydrogenase accessory factor
RA 4,871,305 C→G 10.8% P164R (CCC→CGC) ‡ xdhC → xanthine dehydrogenase accessory factor
RA 4,896,490 G→A 13.1% intergenic (+78/‑130) PP_4304 → / → sbp‑I VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA 4,900,110 A→G 16.0% intergenic (+26/‑472) PP_4308 → / → PP_4309 AsnC family transcriptional regulator/NCS1 family transporter
RA 4,900,114 G→A 15.4% intergenic (+30/‑468) PP_4308 → / → PP_4309 AsnC family transcriptional regulator/NCS1 family transporter
RA 4,900,115 T→C 15.4% intergenic (+31/‑467) PP_4308 → / → PP_4309 AsnC family transcriptional regulator/NCS1 family transporter
RA 4,900,119 C→T 15.4% intergenic (+35/‑463) PP_4308 → / → PP_4309 AsnC family transcriptional regulator/NCS1 family transporter
RA 4,909,966 C→G 16.7% intergenic (+314/+165) PP_4318 → / ← PP_4319 transposase/hypothetical protein
RA 4,909,967 C→G 14.0% intergenic (+315/+164) PP_4318 → / ← PP_4319 transposase/hypothetical protein
RA 4,935,640 T→C 12.1% Q332R (CAG→CGG)  flhA ← flagellar export pore protein
RA 4,951,017 T→G 14.0% intergenic (‑122/+35) fliL ← / ← fliK flagellar protein FliL/flagellar hook‑length control protein FliK
RA 4,951,018 C→A 14.0% intergenic (‑123/+34) fliL ← / ← fliK flagellar protein FliL/flagellar hook‑length control protein FliK
RA 4,964,154 Δ1 bp 100% coding (1249/1476 nt) fleQ ← transcriptional regulator FleQ
RA 5,003,617 C→G 17.4% Q452E (CAA→GAA)  PP_4409 → site‑specific recombinase
RA 5,004,649 C→T 11.8% A318V (GCA→GTA)  PP_4410 → hypothetical protein
RA 5,032,844 C→A 14.8% S105R (AGC→AGA)  PP_4435 → hypothetical protein
RA 5,073,997 T→C 9.5% H58R (CAC→CGC)  PP_5691 ← hypothetical protein
RA 5,099,555 C→A 12.5% intergenic (‑116/‑153) acsA‑I ← / → PP_4488 acetyl‑CoA synthetase/hypothetical protein
RA 5,137,813 A→G 15.4% intergenic (‑164/‑49) PP_4522 ← / → PP_4523 LysR family transcriptional regulator/agmatinase
RA 5,182,107 G→T 28.0% intergenic (‑117/+37) PP_4560 ← / ← csbD ribonuclease BN/stress response protein
RA 5,182,113 T→G 28.1% intergenic (‑123/+31) PP_4560 ← / ← csbD ribonuclease BN/stress response protein
RA 5,182,114 C→A 27.9% intergenic (‑124/+30) PP_4560 ← / ← csbD ribonuclease BN/stress response protein
RA 5,182,120 A→C 27.9% intergenic (‑130/+24) PP_4560 ← / ← csbD ribonuclease BN/stress response protein
RA 5,185,043 T→C 13.3% N489D (AAT→GAT)  aceK ← isocitrate dehydrogenase kinase/phosphatase
RA 5,192,822 T→A 14.3% intergenic (+155/‑47) PP_4572 → / → PP_4573 hypothetical protein/AAA family ATPase
RA 5,192,823 T→A 14.3% intergenic (+156/‑46) PP_4572 → / → PP_4573 hypothetical protein/AAA family ATPase
RA 5,196,645 G→T 9.5% R231S (CGC→AGC)  PP_4577 ← hypothetical protein
RA 5,233,591 T→C 11.2% V136A (GTC→GCC)  PP_4611 → ECF family RNA polymerase sigma‑70 factor
RA 5,233,594 A→T 12.5% D137V (GAC→GTC)  PP_4611 → ECF family RNA polymerase sigma‑70 factor
RA 5,233,597 G→A 12.1% G138D (GGC→GAC)  PP_4611 → ECF family RNA polymerase sigma‑70 factor
RA 5,239,932 G→A 9.7% A144V (GCG→GTG)  ldh ← leucine dehydrogenase
RA 5,239,937 T→C 11.9% P142P (CCA→CCG)  ldh ← leucine dehydrogenase
RA 5,256,423 A→C 12.8% E53A (GAG→GCG) ‡ PP_4633 → DUF1244 domain‑containing protein
RA 5,256,424 G→T 12.8% E53D (GAG→GAT) ‡ PP_4633 → DUF1244 domain‑containing protein
RA 5,261,122 G→T 10.3% P176Q (CCG→CAG)  PP_4637 ← 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase family protein
RA 5,261,125 A→C 10.0% L175R (CTG→CGG)  PP_4637 ← 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase family protein
RA 5,284,507 C→G 14.3% S288R (AGC→AGG)  PP_4658 → methyl‑accepting chemotaxis protein
RA 5,338,086 A→G 13.8% intergenic (+45/‑239) PP_4696 → / → PP_mr53 nitrogen regulation protein NR(I)/CrcZ ncRNA
RA 5,338,098 C→G 18.2% intergenic (+57/‑227) PP_4696 → / → PP_mr53 nitrogen regulation protein NR(I)/CrcZ ncRNA
RA 5,338,101 C→G 16.7% intergenic (+60/‑224) PP_4696 → / → PP_mr53 nitrogen regulation protein NR(I)/CrcZ ncRNA
RA 5,344,519 C→T 9.8% intergenic (+46/‑132) pgi‑II → / → acsA‑II glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA 5,344,528 A→G 12.8% intergenic (+55/‑123) pgi‑II → / → acsA‑II glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA 5,344,532 C→G 11.6% intergenic (+59/‑119) pgi‑II → / → acsA‑II glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA 5,364,531 C→T 8.6% A51T (GCC→ACC)  folP ← dihydropteroate synthase
RA 5,366,334 G→A 11.7% V90V (GTC→GTT)  ftsH ← integral membrane ATP‑dependent zinc metallopeptidase
RA 5,366,345 T→C 10.5% N87D (AAC→GAC)  ftsH ← integral membrane ATP‑dependent zinc metallopeptidase
RA 5,390,704 G→C 7.9% noncoding (24/87 nt) PP_mr56 → C4 ncRNA
RA 5,390,711 T→A 7.9% noncoding (31/87 nt) PP_mr56 → C4 ncRNA
RA 5,427,329 G→A 13.9% I274I (ATC→ATT)  rhlE‑I ← ATP‑dependent RNA helicase
RA 5,427,336 T→A 15.6% D272V (GAC→GTC)  rhlE‑I ← ATP‑dependent RNA helicase
RA 5,427,343 T→C 15.2% N270D (AAT→GAT)  rhlE‑I ← ATP‑dependent RNA helicase
RA 5,468,121:1 +A 9.5% coding (819/1047 nt) mltB ← membrane‑bound lytic murein transglycosylase B
RA 5,468,126 Δ1 bp 9.3% coding (814/1047 nt) mltB ← membrane‑bound lytic murein transglycosylase B
RA 5,479,987:1 +G 15.7% coding (463/993 nt) prmA → ribosomal protein L11 methyltransferase
RA 5,506,680 G→A 10.5% intergenic (+91/‑108) PP_4839 → / → cycA iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
RA 5,506,682 T→C 10.5% intergenic (+93/‑106) PP_4839 → / → cycA iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
RA 5,507,701 C→A 12.1% S305* (TCG→TAG)  cycA → D‑alanine/beta‑alanine/D‑serine/glycine permease
RA 5,545,209 G→T 45.3% intergenic (‑301/+576) rpsF ← / ← rlmB 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
RA 5,545,210 A→T 41.7% intergenic (‑302/+575) rpsF ← / ← rlmB 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
RA 5,545,211 A→C 41.7% intergenic (‑303/+574) rpsF ← / ← rlmB 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
RA 5,572,253 A→T 13.3% intergenic (‑72/+20) yicG ← / ← orn inner membrane protein/oligoribonuclease
RA 5,602,109 A→G 9.3% I475T (ATC→ACC)  PP_4924 ← subtilase family serine protease
RA 5,688,571 Δ1 bp 12.2% coding (451/2061 nt) pilJ ← twitching motility protein PilJ
RA 5,688,576 T→A 11.8% Q149L (CAG→CTG)  pilJ ← twitching motility protein PilJ
RA 5,688,579:1 +G 12.8% coding (443/2061 nt) pilJ ← twitching motility protein PilJ
RA 5,737,655 G→C 12.5% intergenic (‑154/+48) hutU ← / ← PP_5034 urocanate hydratase/hypothetical protein
RA 5,737,658 G→C 12.5% intergenic (‑157/+45) hutU ← / ← PP_5034 urocanate hydratase/hypothetical protein
RA 5,740,523 T→G 12.5% intergenic (+32/+39) hutF → / ← PP_5037 formiminoglutamate deiminase/lipocalin family lipoprotein
RA 5,740,526 A→T 11.8% intergenic (+35/+36) hutF → / ← PP_5037 formiminoglutamate deiminase/lipocalin family lipoprotein
RA 5,740,527 A→T 12.1% intergenic (+36/+35) hutF → / ← PP_5037 formiminoglutamate deiminase/lipocalin family lipoprotein
RA 5,740,530 C→A 12.2% intergenic (+39/+32) hutF → / ← PP_5037 formiminoglutamate deiminase/lipocalin family lipoprotein
RA 5,743,446 G→A 8.8% intergenic (‑223/+24) fbp ← / ← glgP class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA 5,743,450 T→C 7.6% intergenic (‑227/+20) fbp ← / ← glgP class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA 5,809,905 G→T 9.7% P129T (CCT→ACT)  PP_5086 ← nuclease
RA 5,815,587 C→T 13.9% intergenic (+15/+76) PP_5090 → / ← PP_5091 cell division protein/membrane protein
RA 5,815,592 G→T 12.7% intergenic (+20/+71) PP_5090 → / ← PP_5091 cell division protein/membrane protein
RA 5,815,595 A→C 13.7% intergenic (+23/+68) PP_5090 → / ← PP_5091 cell division protein/membrane protein
RA 5,815,600 A→G 13.9% intergenic (+28/+63) PP_5090 → / ← PP_5091 cell division protein/membrane protein
RA 5,849,102 C→T 12.3% intergenic (+21/‑250) rlmI → / → ilvD ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA 5,849,103 C→G 12.3% intergenic (+22/‑249) rlmI → / → ilvD ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA 5,849,104 A→G 12.4% intergenic (+23/‑248) rlmI → / → ilvD ribosomal RNA large subunit methyltransferase I/dihydroxy‑acid dehydratase
RA 5,866,752 G→T 13.7% intergenic (+19/+38) PP_5140 → / ← thyA MerR family transcriptional regulator/thymidylate synthase
RA 5,866,753 A→C 15.1% intergenic (+20/+37) PP_5140 → / ← thyA MerR family transcriptional regulator/thymidylate synthase
RA 5,896,263 A→G 12.9% intergenic (‑32/+153) cysU ← / ← sbp‑II sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
RA 5,896,265 A→T 12.9% intergenic (‑34/+151) cysU ← / ← sbp‑II sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
RA 5,896,266 C→T 12.9% intergenic (‑35/+150) cysU ← / ← sbp‑II sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
RA 5,896,267 A→G 12.9% intergenic (‑36/+149) cysU ← / ← sbp‑II sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
RA 5,896,268 A→T 12.9% intergenic (‑37/+148) cysU ← / ← sbp‑II sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
RA 5,920,559 C→T 8.3% V363V (GTC→GTT)  PP_5190 → type II secretion system protein
RA 5,920,560 A→G 8.2% N364D (AAC→GAC)  PP_5190 → type II secretion system protein
RA 5,925,635:1 +C 9.5% coding (566/1083 nt) gcvT‑II ← aminomethyltransferase
RA 5,925,640 Δ1 bp 9.3% coding (561/1083 nt) gcvT‑II ← aminomethyltransferase
RA 5,943,213 G→T 8.3% K181N (AAG→AAT)  PP_5210 → alcohol dehydrogenase
RA 5,988,865 G→A 28.4% intergenic (+103/‑443) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,875 T→C 25.9% intergenic (+113/‑433) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,880 C→T 22.7% intergenic (+118/‑428) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,881 G→T 22.3% intergenic (+119/‑427) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,882 C→T 22.7% intergenic (+120/‑426) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,885 A→G 22.7% intergenic (+123/‑423) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,891 G→C 24.4% intergenic (+129/‑417) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,893 C→G 25.0% intergenic (+131/‑415) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,896 C→T 24.8% intergenic (+134/‑412) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,900 C→G 24.1% intergenic (+138/‑408) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,904 C→T 24.8% intergenic (+142/‑404) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,906 C→T 24.8% intergenic (+144/‑402) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,945 C→A 40.7% intergenic (+183/‑363) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,950 C→T 41.7% intergenic (+188/‑358) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,951 A→G 41.7% intergenic (+189/‑357) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,961 T→C 42.2% intergenic (+199/‑347) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,967 Δ1 bp 42.1% intergenic (+205/‑341) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,997,245:1 +G 15.0% intergenic (‑158/+42) PP_5252 ← / ← PP_5253 hypothetical protein/arylesterase
RA 5,997,250 Δ1 bp 14.0% intergenic (‑163/+37) PP_5252 ← / ← PP_5253 hypothetical protein/arylesterase
RA 6,005,043 T→G 13.1% intergenic (+25/‑151) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,050 G→C 16.2% intergenic (+32/‑144) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,053 A→T 12.3% intergenic (+35/‑141) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,005,056 G→C 13.6% intergenic (+38/‑138) PP_5259 → / → ydcJ LysR family transcriptional regulator/metalloprotein
RA 6,006,777 G→A 8.5% G279G (GGC→GGT)  PP_5261 ← LysR family transcriptional regulator
RA 6,009,195:1 +G 22.2% intergenic (+36/+46) norM → / ← PP_5263 multidrug resistance protein NorM/GGDEF domain‑containing protein
RA 6,009,199 T→C 20.0% intergenic (+40/+42) norM → / ← PP_5263 multidrug resistance protein NorM/GGDEF domain‑containing protein
RA 6,009,200 T→C 19.5% intergenic (+41/+41) norM → / ← PP_5263 multidrug resistance protein NorM/GGDEF domain‑containing protein
RA 6,009,205 G→A 22.3% intergenic (+46/+36) norM → / ← PP_5263 multidrug resistance protein NorM/GGDEF domain‑containing protein
RA 6,009,206 G→A 21.0% intergenic (+47/+35) norM → / ← PP_5263 multidrug resistance protein NorM/GGDEF domain‑containing protein
RA 6,015,757 G→C 9.3% H22D (CAT→GAT)  PP_5266 ← acetyl‑CoA hydrolase family protein
RA 6,015,758 G→C 9.3% I21M (ATC→ATG)  PP_5266 ← acetyl‑CoA hydrolase family protein
RA 6,023,216 T→C 15.4% intergenic (+75/+69) PP_5273 → / ← PP_5274 oxidoreductase/hypothetical protein
RA 6,041,669 T→C 11.4% D104G (GAC→GGC)  rph ← ribonuclease PH
RA 6,075,803 G→C 10.0% A272G (GCC→GGC)  PP_5328 ← phosphate ABC transporter permease
RA 6,081,044 T→A 10.0% intergenic (+35/+27) PP_5332 → / ← PP_5333 hypothetical protein/hypothetical protein
RA 6,081,045 T→A 10.0% intergenic (+36/+26) PP_5332 → / ← PP_5333 hypothetical protein/hypothetical protein
RA 6,095,227 C→A 15.4% D34Y (GAC→TAC)  pycB ← pyruvate carboxylase subunit B

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 171374–176277 176277 1–4904 4 [3] [3] 4 PP_16SA–[PP_5SA] PP_16SA,PP_23SA,[PP_5SA]
* * ÷ NC_002947 176666–181704 181704 1–5039 4 [3] [3] 4 PP_16SB–[PP_r01] PP_16SB,PP_23SB,[PP_r01]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 174906NA (NA)3 (0.110) 3/236 NT NA noncoding (1704/2902 nt) PP_23SA 23S ribosomal RNA
?NC_002947 = 174936 NA (NA)noncoding (1734/2902 nt) PP_23SA 23S ribosomal RNA
* ? NC_002947 = 18201322 (0.780)18 (0.670)
+TTTCG		 11/236 NT 46.0% intergenic (+2/+63) PP_5SB/PP_0160 5S ribosomal RNA/ferrioxamine receptor
?NC_002947 = 1330518 NA (NA)intergenic (+43/‑264) PP_5SE/PP_1157 5S ribosomal RNA/acetolactate synthase
* ? NC_002947 = 20237827 (0.960)6 (0.320)
+41 bp		 4/164 NT 19.4% coding (7884/26049 nt) PP_0168 putative surface adhesion protein
?NC_002947 = 217036 48 (1.700)coding (22542/26049 nt) PP_0168 putative surface adhesion protein
* ? NC_002947 204059 =4 (0.140)4 (0.150) 4/234 NT 36.7% coding (9565/26049 nt) PP_0168 putative surface adhesion protein
?NC_002947 204088 = 10 (0.370)coding (9594/26049 nt) PP_0168 putative surface adhesion protein
* ? NC_002947 217935 =45 (1.600)3 (0.110) 3/230 NT 7.1% coding (23441/26049 nt) PP_0168 putative surface adhesion protein
?NC_002947 217993 = 37 (1.410)coding (23499/26049 nt) PP_0168 putative surface adhesion protein
* ? NC_002947 235331 =33 (1.170)6 (0.240) 6/214 NT 18.0% intergenic (+28/+97) PP_0183/argH glutathione S‑transferase/argininosuccinate lyase
?NC_002947 235390 = 26 (1.060)intergenic (+87/+38) PP_0183/argH glutathione S‑transferase/argininosuccinate lyase
* ? NC_002947 = 24207831 (1.100)7 (0.260) 7/234 NT 18.5% intergenic (+10/‑213) PP_0189/PP_0190 heme biosynthesis protein/disulfide bond formation protein B
?NC_002947 = 242100 32 (1.190)intergenic (+32/‑191) PP_0189/PP_0190 heme biosynthesis protein/disulfide bond formation protein B
* ? NC_002947 277165 =56 (1.990)7 (0.280) 6/216 NT 12.2% coding (3/1221 nt) PP_0223 DszC family monooxygenase
?NC_002947 277234 = 52 (2.100)intergenic (‑67/+30) PP_0223/PP_0224 DszC family monooxygenase/DszC family monooxygenase
* ? NC_002947 = 28095628 (0.990)4 (0.150) 4/236 NT 12.1% coding (85/795 nt) fliY cystine‑binding protein
?NC_002947 = 280974 31 (1.150)coding (67/795 nt) fliY cystine‑binding protein
* ? NC_002947 295700 =47 (1.670)8 (0.320) 8/218 NT 15.3% intergenic (+47/+95) PP_0241/PP_0242 transporter/TetR family transcriptional regulator
?NC_002947 295759 = 47 (1.880)intergenic (+106/+36) PP_0241/PP_0242 transporter/TetR family transcriptional regulator
* ? NC_002947 = 31030339 (1.380)4 (0.150) 3/238 NT 9.2% coding (2075/2346 nt) PP_0256 putative oxidoreductase
?NC_002947 = 310360 41 (1.500)coding (2018/2346 nt) PP_0256 putative oxidoreductase
* ? NC_002947 311058 =45 (1.600)5 (0.190) 4/234 NT 10.3% coding (1320/2346 nt) PP_0256 putative oxidoreductase
?NC_002947 311097 = 44 (1.640)coding (1281/2346 nt) PP_0256 putative oxidoreductase
* ? NC_002947 = 38085822 (0.780)4 (0.170) 4/200 NT 16.4% intergenic (+45/+64) gbcB/PP_0317 glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
?NC_002947 = 380892 23 (1.000)intergenic (+79/+30) gbcB/PP_0317 glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
* ? NC_002947 = 51192139 (1.380)6 (0.240) 6/216 NT 17.1% intergenic (+58/‑90) trpC/PP_0423 indole‑3‑glycerol phosphate synthase/hypothetical protein
?NC_002947 = 511969 24 (0.970)intergenic (+106/‑42) trpC/PP_0423 indole‑3‑glycerol phosphate synthase/hypothetical protein
* ? NC_002947 526903 =0 (0.000)9 (0.330) 8/236 NT 100% noncoding (138/2902 nt) PP_23SC 23S ribosomal RNA
?NC_002947 700009 = NA (NA)noncoding (156/2902 nt) PP_23SD 23S ribosomal RNA
* ? NC_002947 = 58227637 (1.310)4 (0.150) 4/232 NT 10.4% coding (139/1923 nt) selB selenocysteyl‑tRNA‑specific translation elongation factor
?NC_002947 = 582287 34 (1.280)coding (150/1923 nt) selB selenocysteyl‑tRNA‑specific translation elongation factor
* ? NC_002947 590696 =38 (1.350)3 (0.110) 3/240 NT 7.9% coding (817/885 nt) PP_0500 dTDP‑4‑rhamnose reductase‑like protein
?NC_002947 590734 = 33 (1.200)coding (855/885 nt) PP_0500 dTDP‑4‑rhamnose reductase‑like protein
* ? NC_002947 = 611988NA (NA)3 (0.110) 3/242 NT NA coding (882/966 nt) PP_0526 transposase
?NC_002947 = 612015 NA (NA)coding (909/966 nt) PP_0526 transposase
* ? NC_002947 681274 =24 (0.850)7 (0.300) 6/204 NT 27.5% intergenic (+11/+58) PP_0583/PP_0584 AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer
?NC_002947 681322 = 17 (0.730)intergenic (+59/+10) PP_0583/PP_0584 AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer
* ? NC_002947 738855 =39 (1.380)4 (0.140) 4/242 NT 10.1% coding (564/867 nt) pilD leader peptidase/N‑methyltransferase
?NC_002947 738889 = 33 (1.190)coding (530/867 nt) pilD leader peptidase/N‑methyltransferase
* ? NC_002947 = 74711321 (0.750)5 (0.190) 5/230 NT 20.1% intergenic (‑237/‑557) PP_0638/PP_5448 transposase/hypothetical protein
?NC_002947 = 747138 20 (0.760)intergenic (‑262/‑532) PP_0638/PP_5448 transposase/hypothetical protein
* ? NC_002947 = 86793543 (1.530)3 (0.120) 3/220 NT 7.6% intergenic (+30/+147) PP_0750/mqo‑I hypothetical protein/malate:quinone oxidoreductase
?NC_002947 = 867999 34 (1.350)intergenic (+94/+83) PP_0750/mqo‑I hypothetical protein/malate:quinone oxidoreductase
* ? NC_002947 = 91770233 (1.170)4 (0.160) 4/224 NT 11.0% intergenic (‑133/+66) PP_0798/opdC GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
?NC_002947 = 917742 35 (1.360)intergenic (‑173/+26) PP_0798/opdC GGDEF domain‑containing protein/histidine‑specific outer membrane porin D
* ? NC_002947 1223233 =20 (0.710)4 (0.160) 4/218 NT 18.3% intergenic (‑18/+48) PP_1067/gltL sensor histidine kinase/glutamate/aspartate ABC transporter ATP binding protein
?NC_002947 1223273 = 18 (0.720)intergenic (‑58/+8) PP_1067/gltL sensor histidine kinase/glutamate/aspartate ABC transporter ATP binding protein
* ? NC_002947 = 143402834 (1.210)6 (0.220) 6/234 NT 14.9% coding (363/1248 nt) PP_1255 cis‑4‑hydroxy‑D‑proline oxidase
?NC_002947 = 1434082 36 (1.340)coding (309/1248 nt) PP_1255 cis‑4‑hydroxy‑D‑proline oxidase
* ? NC_002947 1436861 =35 (1.240)3 (0.110) 3/236 NT 8.5% coding (210/948 nt) PP_1257 1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
?NC_002947 1436901 = 31 (1.150)coding (170/948 nt) PP_1257 1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
* ? NC_002947 = 148704210 (0.360)8 (0.380) 6/186 NT 46.3% intergenic (+51/+79) yhdZ/degS amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
?NC_002947 = 1487072 11 (0.520)intergenic (+81/+49) yhdZ/degS amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
* ? NC_002947 = 15704686 (0.210)5 (0.230) 5/194 NT 33.6% intergenic (+34/‑154) pcaF‑I/pcaT beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
?NC_002947 = 1570494 15 (0.680)intergenic (+60/‑128) pcaF‑I/pcaT beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease
* ? NC_002947 1657857 =31 (1.100)4 (0.150) 4/230 NT 13.6% coding (679/1698 nt) PP_1450 TPS family activation/secretion protein
?NC_002947 1657905 = 22 (0.840)coding (631/1698 nt) PP_1450 TPS family activation/secretion protein
* ? NC_002947 = 166683919 (0.670)4 (0.160) 4/214 NT 17.6% intergenic (‑69/‑202) PP_1460/ffh membrane protein/signal recognition particle GTPase subunit
?NC_002947 = 1666868 21 (0.860)intergenic (‑98/‑173) PP_1460/ffh membrane protein/signal recognition particle GTPase subunit
* ? NC_002947 = 176862133 (1.170)4 (0.150) 4/236 NT 10.9% coding (180/480 nt) PP_1578 hypothetical protein
?NC_002947 = 1768635 34 (1.260)coding (194/480 nt) PP_1578 hypothetical protein
* ? NC_002947 1899260 =33 (1.170)8 (0.320) 8/216 NT 21.6% intergenic (+288/‑232) PP_t18/PP_1703 tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
?NC_002947 1899320 = 29 (1.170)intergenic (+348/‑172) PP_t18/PP_1703 tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
* ? NC_002947 = 204885326 (0.920)9 (0.370) 7/212 NT 27.5% intergenic (+49/+90) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein
?NC_002947 = 2048910 25 (1.030)intergenic (+106/+33) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein
* ? NC_002947 = 205786624 (0.850)5 (0.220) 5/198 NT 20.3% intergenic (+39/+89) PP_1832/PP_1833 oxidase/hypothetical protein
?NC_002947 = 2057906 20 (0.880)intergenic (+79/+49) PP_1832/PP_1833 oxidase/hypothetical protein
* ? NC_002947 2074570 =38 (1.350)4 (0.150) 4/232 NT 10.4% coding (852/1188 nt) ygaY transporter YgaY
?NC_002947 2074592 = 33 (1.240)coding (830/1188 nt) ygaY transporter YgaY
* ? NC_002947 2076632 =29 (1.030)4 (0.150) 4/232 NT 12.8% coding (570/750 nt) PP_1852 enoyl‑ACP reductase
?NC_002947 2076675 = 27 (1.020)coding (527/750 nt) PP_1852 enoyl‑ACP reductase
* ? NC_002947 = 229555320 (0.710)3 (0.110) 3/236 NT 12.2% intergenic (+55/‑68) ppgL/PP_5496 L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
?NC_002947 = 2295606 24 (0.890)intergenic (+108/‑15) ppgL/PP_5496 L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
* ? NC_002947 2308940 =26 (0.920)4 (0.150) 4/238 NT 13.5% coding (173/957 nt) PP_2031 hypothetical protein
?NC_002947 2308966 = 26 (0.950)coding (147/957 nt) PP_2031 hypothetical protein
* ? NC_002947 2474161 =24 (0.850)6 (0.260) 6/200 NT 28.2% intergenic (‑23/+157) PP_2167/tal PhoD‑like phosphatase/transaldolase
?NC_002947 2474229 = 11 (0.480)intergenic (‑91/+89) PP_2167/tal PhoD‑like phosphatase/transaldolase
* ? NC_002947 = 272319419 (0.670)4 (0.150) 4/232 NT 17.8% coding (441/846 nt) PP_2383 AraC family transcriptional regulator
?NC_002947 = 2723215 19 (0.720)coding (420/846 nt) PP_2383 AraC family transcriptional regulator
* ? NC_002947 = 273225123 (0.820)4 (0.150) 4/234 NT 14.8% coding (1545/2361 nt) polB DNA polymerase II
?NC_002947 = 2732271 24 (0.900)coding (1565/2361 nt) polB DNA polymerase II
* ? NC_002947 = 277008426 (0.920)3 (0.110) 3/234 NT 10.0% coding (94/354 nt) PP_2422 hypothetical protein
?NC_002947 = 2770120 29 (1.080)coding (58/354 nt) PP_2422 hypothetical protein
* ? NC_002947 2783220 =21 (0.750)4 (0.150) 4/240 NT 14.4% coding (246/927 nt) PP_2436 LysR family transcriptional regulator
?NC_002947 2783251 = 27 (0.980)coding (215/927 nt) PP_2436 LysR family transcriptional regulator
* ? NC_002947 2957115 =20 (0.710)6 (0.240) 6/216 NT 29.6% intergenic (+27/‑169) PP_2588/PP_2589 class III aminotransferase/aldehyde dehydrogenase family protein
?NC_002947 2957202 = 11 (0.440)intergenic (+114/‑82) PP_2588/PP_2589 class III aminotransferase/aldehyde dehydrogenase family protein
* ? NC_002947 3233587 =11 (0.390)4 (0.150) 4/230 NT 26.4% coding (732/948 nt) GbpR galactose‑binding protein regulator
?NC_002947 3233624 = 12 (0.460)coding (769/948 nt) GbpR galactose‑binding protein regulator
* ? NC_002947 3588140 =37 (1.310)3 (0.130) 3/206 NT 10.3% intergenic (+18/‑57) catA‑II/benE‑II catechol 1,2‑dioxygenase/benzoate transport protein
?NC_002947 3588208 = 21 (0.890)coding (12/1272 nt) benE‑II benzoate transport protein
* ? NC_002947 = 372322028 (0.990)4 (0.150) 4/240 NT 13.0% coding (434/927 nt) PP_3288 universal stress protein family protein
?NC_002947 = 3723267 26 (0.950)coding (481/927 nt) PP_3288 universal stress protein family protein
* ? NC_002947 3749840 =23 (0.820)3 (0.110) 3/232 NT 13.1% coding (60/372 nt) PP_3313 heat shock protein
?NC_002947 3749877 = 18 (0.680)coding (23/372 nt) PP_3313 heat shock protein
* ? NC_002947 = 391581832 (1.140)3 (0.110) 3/230 NT 10.0% coding (743/1176 nt) PP_3455 multidrug RND transporter membrane fusion protein
?NC_002947 = 3915870 24 (0.910)coding (795/1176 nt) PP_3455 multidrug RND transporter membrane fusion protein
* ? NC_002947 3947957 =19 (0.670)3 (0.140) 3/190 NT 25.3% coding (136/1797 nt) PP_3483 type II secretion system protein
?NC_002947 3948042 = 3 (0.140)coding (51/1797 nt) PP_3483 type II secretion system protein
* ? NC_002947 = 396303224 (0.850)3 (0.120) 3/224 NT 12.0% intergenic (+34/+83) PP_3492/PP_3493 acyl‑CoA dehydrogenase/LysR family transcriptional regulator
?NC_002947 = 3963072 22 (0.860)intergenic (+74/+43) PP_3492/PP_3493 acyl‑CoA dehydrogenase/LysR family transcriptional regulator
* ? NC_002947 = 397840426 (0.920)3 (0.110) 3/236 NT 9.2% coding (2271/3762 nt) cobN aerobic cobaltochelatase subunit CobN
?NC_002947 = 3978429 34 (1.260)coding (2246/3762 nt) cobN aerobic cobaltochelatase subunit CobN
* ? NC_002947 4150068 =22 (0.780)4 (0.170) 4/210 NT 18.3% intergenic (+23/‑374) PP_3654/PP_3655 leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
?NC_002947 4150135 = 17 (0.710)intergenic (+90/‑307) PP_3654/PP_3655 leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
* ? NC_002947 = 415008519 (0.670)6 (0.250) 5/210 NT 26.5% intergenic (+40/‑357) PP_3654/PP_3655 leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
?NC_002947 = 4150116 17 (0.710)intergenic (+71/‑326) PP_3654/PP_3655 leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
* ? NC_002947 = 457786516 (0.570)4 (0.150) 4/236 NT 15.9% intergenic (+30/+79) PP_4057/glgB membrane protein/1,4‑alpha‑glucan branching enzyme
?NC_002947 = 4577907 27 (1.000)intergenic (+72/+37) PP_4057/glgB membrane protein/1,4‑alpha‑glucan branching enzyme
* ? NC_002947 4586063 =6 (0.210)7 (0.360) 7/170 NT 77.2% intergenic (+102/+115) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
?NC_002947 4586167 = 0 (0.000)intergenic (+206/+11) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
* ? NC_002947 = 45861005 (0.180)8 (0.410) 4/170 NT 82.2% intergenic (+139/+78) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
?NC_002947 = 4586128 0 (0.000)intergenic (+167/+50) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
* ? NC_002947 4808219 =0 (0.000)18 (0.890) 18/176 NT 67.9% intergenic (‑283/‑272) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 = 5988991 17 (0.840)intergenic (+229/‑317) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? NC_002947 = 48082240 (0.000)12 (0.470) 11/222 NT 52.2% intergenic (‑288/‑267) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 5988821 = 22 (0.870)intergenic (+59/‑487) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? NC_002947 = 485249810 (0.360)5 (0.270) 5/164 NT 36.1% intergenic (‑124/+173) recR/ybaB recombination protein RecR/nucleoid‑associated broad specificity regulator
?NC_002947 = 4852557 11 (0.590)intergenic (‑183/+114) recR/ybaB recombination protein RecR/nucleoid‑associated broad specificity regulator
* ? NC_002947 = 486018124 (0.850)3 (0.120) 3/224 NT 11.1% coding (914/2331 nt) ligA DNA ligase
?NC_002947 = 4860205 26 (1.010)coding (890/2331 nt) ligA DNA ligase
* ? NC_002947 = 489644316 (0.570)17 (0.730) 16/204 NT 56.4% intergenic (+31/‑177) PP_4304/sbp‑I VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
?NC_002947 = 4896490 13 (0.560)intergenic (+78/‑130) PP_4304/sbp‑I VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
* ? NC_002947 4927328 =26 (0.920)4 (0.150) 4/238 NT 14.8% coding (599/1113 nt) cheBA chemotaxis response regulator protein‑glutamate methylesterase
?NC_002947 4927360 = 21 (0.770)coding (567/1113 nt) cheBA chemotaxis response regulator protein‑glutamate methylesterase
* ? NC_002947 4957603 =40 (1.420)4 (0.160) 4/216 NT 10.2% intergenic (‑41/+122) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein
?NC_002947 4957693 = 35 (1.420)intergenic (‑131/+32) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein
* ? NC_002947 5078805 =34 (1.210)3 (0.110) 3/238 NT 8.6% intergenic (‑2/+395) mgtE/PP_t56 magnesium transporter/tRNA‑Arg
?NC_002947 5078837 = 31 (1.140)intergenic (‑34/+363) mgtE/PP_t56 magnesium transporter/tRNA‑Arg
* ? NC_002947 = 511262829 (1.030)5 (0.220) 4/202 NT 14.1% intergenic (‑169/+97) rluB/PP_4497 23S rRNA pseudouridylate synthase B/hypothetical protein
?NC_002947 = 5112689 37 (1.600)intergenic (‑230/+36) rluB/PP_4497 23S rRNA pseudouridylate synthase B/hypothetical protein
* ? NC_002947 5138301 =35 (1.240)4 (0.150) 4/236 NT 10.7% coding (440/963 nt) PP_4523 agmatinase
?NC_002947 5138332 = 33 (1.220)coding (471/963 nt) PP_4523 agmatinase
* ? NC_002947 5162618 =26 (0.920)5 (0.230) 5/194 NT 24.7% intergenic (+93/+108) PP_4544/PP_4545 hypothetical protein/beta‑ketodecanoyl‑ACP synthase
?NC_002947 5162702 = 10 (0.450)intergenic (+177/+24) PP_4544/PP_4545 hypothetical protein/beta‑ketodecanoyl‑ACP synthase
* ? NC_002947 5201627 =21 (0.750)5 (0.250) 5/172 NT 32.6% intergenic (‑65/‑115) PP_4582/PP_4583 membrane protein/putative Peptidase
?NC_002947 5201722 = 6 (0.300)intergenic (‑160/‑20) PP_4582/PP_4583 membrane protein/putative Peptidase
* ? NC_002947 = 528847111 (0.390)4 (0.190) 4/186 NT 27.3% intergenic (‑104/+80) PP_4660/mdaB LysR family transcriptional regulator/drug activity modulator B
?NC_002947 = 5288505 13 (0.610)intergenic (‑138/+46) PP_4660/mdaB LysR family transcriptional regulator/drug activity modulator B
* ? NC_002947 = 533677532 (1.140)5 (0.180) 5/238 NT 12.5% coding (177/1443 nt) PP_4696 nitrogen regulation protein NR(I)
?NC_002947 = 5336801 39 (1.430)coding (203/1443 nt) PP_4696 nitrogen regulation protein NR(I)
* ? NC_002947 5365099 =27 (0.960)3 (0.110) 3/230 NT 11.1% coding (1505/1914 nt) ftsH integral membrane ATP‑dependent zinc metallopeptidase
?NC_002947 5365130 = 23 (0.870)coding (1474/1914 nt) ftsH integral membrane ATP‑dependent zinc metallopeptidase
* ? NC_002947 = 538248010 (0.360)5 (0.250) 5/176 NT 33.2% intergenic (+52/+81) smpB/pdhR SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
?NC_002947 = 5382508 13 (0.650)intergenic (+80/+53) smpB/pdhR SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
* ? NC_002947 5477138 =35 (1.240)7 (0.370) 5/164 NT 34.7% intergenic (+3/+109) PP_4813/PP_4814 PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
?NC_002947 5477237 = 3 (0.160)intergenic (+102/+10) PP_4813/PP_4814 PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
* ? NC_002947 5485172 =27 (0.960)3 (0.140) 4/194 NT 14.5% intergenic (+30/‑117) purH/purD bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
?NC_002947 5485246 = 14 (0.630)intergenic (+104/‑43) purH/purD bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
* ? NC_002947 = 550974536 (1.280)3 (0.120) 3/224 NT 8.0% intergenic (+36/‑105) urtA/urtB urea ABC transporter substrate‑binding protein/urea ABC transporter permease
?NC_002947 = 5509807 36 (1.400)intergenic (+98/‑43) urtA/urtB urea ABC transporter substrate‑binding protein/urea ABC transporter permease
* ? NC_002947 = 551331539 (1.380)7 (0.320) 7/194 NT 19.2% intergenic (+45/‑109) urtD/urtE ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
?NC_002947 = 5513371 28 (1.260)intergenic (+101/‑53) urtD/urtE ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
* ? NC_002947 5537079 =41 (1.460)8 (0.360) 6/192 NT 23.2% intergenic (+8/+95) nadE/PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin
?NC_002947 5537155 = 21 (0.960)intergenic (+84/+19) nadE/PP_4870 NH(3)‑dependent NAD(+) synthetase/azurin
* ? NC_002947 5593015 =46 (1.630)7 (0.250) 7/242 NT 13.7% coding (1090/1284 nt) PP_4921 NCS1 family transporter
?NC_002947 5593038 = 43 (1.550)coding (1067/1284 nt) PP_4921 NCS1 family transporter
* ? NC_002947 = 559417021 (0.750)4 (0.180) 4/190 NT 18.5% intergenic (‑66/+79) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
?NC_002947 = 5594207 19 (0.870)intergenic (‑103/+42) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
* ? NC_002947 5636524 =25 (0.890)3 (0.110) 3/234 NT 10.8% coding (841/1803 nt) PP_4948 acyl‑CoA dehydrogenase family protein
?NC_002947 5636548 = 26 (0.970)coding (865/1803 nt) PP_4948 acyl‑CoA dehydrogenase family protein
* ? NC_002947 5698783 =27 (0.960)4 (0.160) 4/212 NT 14.0% intergenic (+17/‑150) hslU/PP_5002 protease HslVU ATPase subunit/hypothetical protein
?NC_002947 5698866 = 26 (1.070)intergenic (+100/‑67) hslU/PP_5002 protease HslVU ATPase subunit/hypothetical protein
* ? NC_002947 = 569879927 (0.960)5 (0.210) 5/212 NT 16.9% intergenic (+33/‑134) hslU/PP_5002 protease HslVU ATPase subunit/hypothetical protein
?NC_002947 = 5698848 26 (1.070)intergenic (+82/‑85) hslU/PP_5002 protease HslVU ATPase subunit/hypothetical protein
* ? NC_002947 = 574338651 (1.810)7 (0.270) 6/228 NT 13.7% intergenic (‑163/+84) fbp/glgP class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
?NC_002947 = 5743450 41 (1.570)intergenic (‑227/+20) fbp/glgP class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
* ? NC_002947 5827883 =62 (2.200)6 (0.230) 6/224 NT 10.4% intergenic (+29/+170) mtgA/rpoH monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
?NC_002947 5827967 = 47 (1.830)intergenic (+113/+86) mtgA/rpoH monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
* ? NC_002947 5870317 =33 (1.170)5 (0.230) 5/188 NT 20.3% intergenic (+22/+112) PP_5144/ptsP hypothetical protein/phosphoenolpyruvate‑dependent regulator
?NC_002947 5870410 = 14 (0.650)intergenic (+115/+19) PP_5144/ptsP hypothetical protein/phosphoenolpyruvate‑dependent regulator
* ? NC_002947 5896257 =23 (0.820)4 (0.150) 4/234 NT 14.3% intergenic (‑26/+159) cysU/sbp‑II sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
?NC_002947 5896277 = 26 (0.970)intergenic (‑46/+139) cysU/sbp‑II sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
* ? NC_002947 5914213 =15 (0.530)10 (0.460) 10/190 NT 42.0% intergenic (+49/+104) spuI/argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
?NC_002947 5914309 = 16 (0.740)intergenic (+145/+8) spuI/argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
* ? NC_002947 = 591424015 (0.530)6 (0.280) 4/190 NT 30.3% intergenic (+76/+77) spuI/argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
?NC_002947 = 5914280 16 (0.740)intergenic (+116/+37) spuI/argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
* ? NC_002947 = 594367854 (1.920)5 (0.220) 5/202 NT 9.9% intergenic (+30/+55) PP_5210/PP_5211 alcohol dehydrogenase/ChaC‑related protein
?NC_002947 = 5943699 47 (2.030)intergenic (+51/+34) PP_5210/PP_5211 alcohol dehydrogenase/ChaC‑related protein
* ? NC_002947 5995262 =45 (1.600)4 (0.150) 4/238 NT 8.6% coding (1826/1983 nt) PP_5252 hypothetical protein
?NC_002947 5995293 = 41 (1.500)coding (1795/1983 nt) PP_5252 hypothetical protein
* ? NC_002947 6000959 =36 (1.280)3 (0.140) 3/186 NT 11.3% intergenic (+10/+99) PP_5256/amaA cyclic nucleotide‑binding protein/L‑pipecolate oxidase
?NC_002947 6001053 = 20 (0.940)intergenic (+104/+5) PP_5256/amaA cyclic nucleotide‑binding protein/L‑pipecolate oxidase
* ? NC_002947 = 606050043 (1.530)5 (0.200) 5/218 NT 12.3% intergenic (+80/+101) PP_5311/PP_5312 signal transduction protein/hypothetical protein
?NC_002947 = 6060559 33 (1.320)intergenic (+139/+42) PP_5311/PP_5312 signal transduction protein/hypothetical protein