mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC | 1,851,823 | (TGCG)2→3 | coding (867/2241 nt) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 171356–172965 | 176314–172972 | 8–4959 | 7 [5] | [6] 7 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176664–178395 | 181701–178402 | 8–5038 | 7 [6] | [6] 8 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 249070 | 24 (0.830) | 8 (0.290) | 7/254 | 2.4 | 25.8% | intergenic (+18/+31) | PP_0198/qmcA | putative transporter/membrane protease family protein |
| ? | NC_002947 | = 249090 | 23 (0.830) | intergenic (+38/+11) | PP_0198/qmcA | putative transporter/membrane protease family protein | |||||
| * | ? | NC_002947 | = 358087 | 7 (0.240) | 5 (0.230) | 7/198 | 1.8 | 43.0% | intergenic (+52/‑78) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| ? | NC_002947 | = 358099 | 8 (0.370) | intergenic (+64/‑66) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein | |||||
| * | ? | NC_002947 | = 380858 | 16 (0.550) | 9 (0.380) | 8/218 | 1.8 | 42.7% | intergenic (+45/+64) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 380892 | 11 (0.460) | intergenic (+79/+30) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
| * | ? | NC_002947 | 445062 = | 23 (0.800) | 6 (0.260) | 6/210 | 2.2 | 28.4% | intergenic (+32/‑256) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| ? | NC_002947 | 445155 = | 12 (0.520) | intergenic (+125/‑163) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase | |||||
| * | ? | NC_002947 | 883834 = | 11 (0.380) | 4 (0.180) | 4/200 | 2.7 | 49.0% | intergenic (+69/‑259) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947 | 883908 = | 0 (0.000) | intergenic (+143/‑185) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
| * | ? | NC_002947 | 1114875 = | 21 (0.730) | 5 (0.210) | 5/214 | 2.5 | 23.8% | intergenic (‑64/+115) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase |
| ? | NC_002947 | 1114951 = | 15 (0.640) | intergenic (‑140/+39) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase | |||||
| * | ? | NC_002947 | = 1419584 | 14 (0.480) | 5 (0.230) | 4/200 | 2.7 | 33.8% | intergenic (‑67/+70) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419614 | 9 (0.410) | intergenic (‑97/+40) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | 1967188 = | 14 (0.480) | 6 (0.280) | 5/198 | 2.3 | 39.4% | intergenic (+15/+104) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947 | 1967284 = | 8 (0.370) | intergenic (+111/+8) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
| * | ? | NC_002947 | = 2050638 | 21 (0.730) | 4 (0.190) | 4/190 | 2.6 | 21.0% | intergenic (‑88/+87) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| ? | NC_002947 | = 2050674 | 15 (0.720) | intergenic (‑124/+51) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 2078281 | 35 (1.210) | 9 (0.330) | 9/250 | 1.9 | 25.0% | intergenic (+23/+92) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 2078364 | 21 (0.770) | intergenic (+106/+9) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein | |||||
| * | ? | NC_002947 | 2264038 = | 21 (0.730) | 6 (0.220) | 6/252 | 2.7 | 24.0% | intergenic (+167/‑56) | trpF/accD | N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta |
| ? | NC_002947 | 2264075 = | 18 (0.650) | intergenic (+204/‑19) | trpF/accD | N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta | |||||
| * | ? | NC_002947 | 2295818 = | 30 (1.040) | 8 (0.340) | 7/216 | 2.0 | 31.1% | intergenic (+21/+112) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein |
| ? | NC_002947 | 2295903 = | 11 (0.470) | intergenic (+106/+27) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein | |||||
| * | ? | NC_002947 | = 2655400 | 26 (0.900) | 7 (0.250) | 7/254 | 2.4 | 21.2% | intergenic (+71/+99) | cysB/cysH | transcriptional regulator CysB/phosphoadenosine phosphosulfate reductase |
| ? | NC_002947 | = 2655479 | 27 (0.970) | intergenic (+150/+20) | cysB/cysH | transcriptional regulator CysB/phosphoadenosine phosphosulfate reductase | |||||
| * | ? | NC_002947 | 2664051 = | 14 (0.480) | 4 (0.170) | 4/216 | 2.9 | 22.6% | intergenic (+33/‑130) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
| ? | NC_002947 | 2664132 = | 16 (0.680) | intergenic (+114/‑49) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase | |||||
| * | ? | NC_002947 | 3415693 = | 19 (0.660) | 7 (0.260) | 7/248 | 2.4 | 27.5% | coding (1591/1830 nt) | PP_3029 | DNA cytosine methyltransferase family protein |
| ? | NC_002947 | 3415734 = | 19 (0.700) | coding (1550/1830 nt) | PP_3029 | DNA cytosine methyltransferase family protein | |||||
| * | ? | NC_002947 | = 3581709 | 19 (0.660) | 8 (0.280) | 6/260 | 2.8 | 29.8% | coding (762/942 nt) | PP_3160 | hypothetical protein |
| ? | NC_002947 | = 3581745 | 19 (0.670) | coding (798/942 nt) | PP_3160 | hypothetical protein | |||||
| * | ? | NC_002947 | = 3588138 | 15 (0.520) | 6 (0.220) | 6/254 | 2.7 | 22.5% | intergenic (+16/‑59) | catA‑II/benE‑II | catechol 1,2‑dioxygenase/benzoate transport protein |
| ? | NC_002947 | = 3588208 | 27 (0.970) | coding (12/1272 nt) | benE‑II | benzoate transport protein | |||||
| * | ? | NC_002947 | = 3817397 | 17 (0.590) | 8 (0.290) | 6/256 | 2.7 | 32.7% | coding (337/2364 nt) | bamA‑II | outer membrane protein assembly factor |
| ? | NC_002947 | = 3817408 | NA (NA) | coding (348/2364 nt) | bamA‑II | outer membrane protein assembly factor | |||||
| * | ? | NC_002947 | = 4586100 | 13 (0.450) | 6 (0.290) | 7/188 | 1.7 | 44.1% | intergenic (+139/+78) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586128 | 6 (0.290) | intergenic (+167/+50) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | 5477138 = | 29 (1.000) | 13 (0.650) | 8/182 | 1.4 | 49.1% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5477237 = | 7 (0.350) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | 5704565 = | 24 (0.830) | 13 (0.560) | 12/212 | 1.0 | 43.2% | intergenic (+34/+78) | PP_5006/PP_5007 | TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2 |
| ? | NC_002947 | 5704628 = | 15 (0.650) | intergenic (+97/+15) | PP_5006/PP_5007 | TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2 | |||||
| * | ? | NC_002947 | 5759460 = | 11 (0.380) | 7 (0.320) | 5/200 | 2.4 | 55.3% | intergenic (+13/+143) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | 5759552 = | 3 (0.140) | intergenic (+105/+51) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
| * | ? | NC_002947 | = 6000988 | 14 (0.480) | 8 (0.360) | 6/204 | 2.1 | 41.2% | intergenic (+39/+70) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
| ? | NC_002947 | = 6001022 | 12 (0.540) | intergenic (+73/+36) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase | |||||