breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 11,648 G→C 12.1% M182I (ATG→ATC)  dnaN → DNA polymerase III subunit beta
RA 11,649 A→G 12.1% S183G (AGC→GGC)  dnaN → DNA polymerase III subunit beta
RA 11,656 C→T 12.1% P185L (CCG→CTG) ‡ dnaN → DNA polymerase III subunit beta
RA 11,657 G→C 12.1% P185P (CCG→CCC) ‡ dnaN → DNA polymerase III subunit beta
RA 35,009 A→G 16.0% intergenic (+27/+31) czrSA → / ← PP_0031 metal‑sensor histidine kinase/hypothetical protein
RA 35,012 C→T 15.9% intergenic (+30/+28) czrSA → / ← PP_0031 metal‑sensor histidine kinase/hypothetical protein
RA 58,747 T→A 20.0% intergenic (‑658/+30) PP_5424 ← / ← PP_0050 hypothetical protein/hypothetical protein
RA 58,750 T→A 20.0% intergenic (‑661/+27) PP_5424 ← / ← PP_0050 hypothetical protein/hypothetical protein
RA 96,580 C→T 10.8% Q35Q (CAG→CAA)  PP_0088 ← alkanal monooxygenase
RA 106,864 C→T 14.3% A244V (GCC→GTC)  PP_0101 → sulfate transporter
RA 115,909 G→A 12.5% R71Q (CGG→CAG)  PP_0110 → CyoE‑like protoheme IX farnesyltransferase
RA 115,916 T→C 12.1% I73I (ATT→ATC)  PP_0110 → CyoE‑like protoheme IX farnesyltransferase
RA 115,917 G→A 12.1% D74N (GAT→AAT)  PP_0110 → CyoE‑like protoheme IX farnesyltransferase
RA 165,932 A→C 13.4% D325E (GAT→GAG)  pntAA ← pyridine nucleotide transhydrogenase subunit alpha
RA 184,101 G→T 17.3% S154R (AGC→AGA)  PP_0160 ← ferrioxamine receptor
RA 195,559 C→A 47.1% T355T (ACC→ACA)  PP_0168 → putative surface adhesion protein
RA 195,628 C→T 13.5% D378D (GAC→GAT)  PP_0168 → putative surface adhesion protein
RA 195,629 A→G 13.5% T379A (ACC→GCC)  PP_0168 → putative surface adhesion protein
RA 195,634 C→T 49.3% T380T (ACC→ACT)  PP_0168 → putative surface adhesion protein
RA 196,795 G→C 24.2% T767T (ACG→ACC)  PP_0168 → putative surface adhesion protein
RA 196,879 G→A 40.0% V795V (GTG→GTA)  PP_0168 → putative surface adhesion protein
RA 197,032 C→T 6.9% T846T (ACC→ACT)  PP_0168 → putative surface adhesion protein
RA 197,089 T→C 9.6% N865N (AAT→AAC)  PP_0168 → putative surface adhesion protein
RA 197,179 A→G 8.2% V895V (GTA→GTG)  PP_0168 → putative surface adhesion protein
RA 197,185 C→T 8.8% T897T (ACC→ACT)  PP_0168 → putative surface adhesion protein
RA 197,572 G→A 30.1% K1026K (AAG→AAA)  PP_0168 → putative surface adhesion protein
RA 197,590 T→C 41.9% D1032D (GAT→GAC)  PP_0168 → putative surface adhesion protein
RA 197,695 G→C 19.7% T1067T (ACG→ACC)  PP_0168 → putative surface adhesion protein
RA 248,567 C→G 10.8% L50V (CTG→GTG)  PP_0198 → putative transporter
RA 284,587 T→A 16.4% intergenic (+33/+30) betT‑II → / ← atsK choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA 284,588 T→A 16.6% intergenic (+34/+29) betT‑II → / ← atsK choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA 304,430 C→T 20.0% R114H (CGC→CAC)  PP_0249 ← hypothetical protein
RA 304,434 A→G 13.3% L113L (TTG→CTG)  PP_0249 ← hypothetical protein
RA 304,435 C→T 13.3% Q112Q (CAG→CAA)  PP_0249 ← hypothetical protein
RA 304,439 A→G 13.3% V111A (GTG→GCG)  PP_0249 ← hypothetical protein
RA 322,135 G→A 25.0% intergenic (+420/+38) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 322,142 T→C 25.8% intergenic (+427/+31) aguA → / ← PP_0267 agmatine deiminase/ferric siderophore receptor
RA 337,794 A→G 18.2% intergenic (‑41/+88) PP_0279 ← / ← PP_0280 hypothetical protein/amino acid ABC transporter permease
RA 337,795 C→T 17.4% intergenic (‑42/+87) PP_0279 ← / ← PP_0280 hypothetical protein/amino acid ABC transporter permease
RA 382,128:1 +C 14.3% coding (420/1626 nt) PP_0317 ← methyl‑accepting chemotaxis transducer
RA 431,365 C→T 12.5% V318I (GTT→ATT)  PP_0354 ← CBS domain‑containing protein
RA 432,015 A→G 15.6% F101S (TTC→TCC)  PP_0354 ← CBS domain‑containing protein
RA 432,018 C→T 14.5% C100Y (TGC→TAC) ‡ PP_0354 ← CBS domain‑containing protein
RA 432,019 A→G 14.3% C100R (TGC→CGC) ‡ PP_0354 ← CBS domain‑containing protein
RA 432,022 C→T 13.1% E99K (GAG→AAG)  PP_0354 ← CBS domain‑containing protein
RA 439,419 A→T 15.4% N185K (AAT→AAA)  PP_0361 ← competence protein ComF
RA 471,069 T→C 21.0% intergenic (‑110/+18) PP_0386 ← / ← rpoD sensory box protein/RNA polymerase sigma 70 factor
RA 471,070 G→A 21.0% intergenic (‑111/+17) PP_0386 ← / ← rpoD sensory box protein/RNA polymerase sigma 70 factor
RA 484,203 C→G 20.0% G80A (GGC→GCC)  yeaG ← protein kinase
RA 510,138 T→C 12.5% I52T (ATC→ACC)  trpD → anthranilate phosphoribosyltransferase
RA 510,145 A→T 12.1% E54D (GAA→GAT)  trpD → anthranilate phosphoribosyltransferase
RA 510,146 A→T 12.1% I55F (ATC→TTC)  trpD → anthranilate phosphoribosyltransferase
RA 529,925 T→C 11.4% intergenic (+19/‑165) PP_5SC → / → birA 5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
RA 529,930 G→A 11.4% intergenic (+24/‑160) PP_5SC → / → birA 5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
RA 529,931 C→T 11.4% intergenic (+25/‑159) PP_5SC → / → birA 5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
RA 529,932 A→G 11.4% intergenic (+26/‑158) PP_5SC → / → birA 5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
RA 529,933 T→C 11.4% intergenic (+27/‑157) PP_5SC → / → birA 5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
RA 529,938 G→A 11.4% intergenic (+32/‑152) PP_5SC → / → birA 5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
RA 539,877 C→T 25.1% A751V (GCG→GTG)  rpoB → DNA‑directed RNA polymerase subunit beta
RA 555,768 T→G 17.4% S28A (TCG→GCG)  rplN → 50S ribosomal protein L14
RA 555,771 C→A 16.7% H29N (CAC→AAC)  rplN → 50S ribosomal protein L14
RA 583,798 G→A 12.9% R554Q (CGG→CAG)  selB → selenocysteyl‑tRNA‑specific translation elongation factor
RA 583,801 T→C 12.2% L555P (CTG→CCG)  selB → selenocysteyl‑tRNA‑specific translation elongation factor
RA 609,782 A→C 16.4% L356R (CTG→CGG)  PP_0525 ← B12 family TonB‑dependent receptor
RA 648,250 A→T 12.5% intergenic (+16/+75) acoR → / ← accC acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA 699,398 A→G 25.0% intergenic (+50/‑36) PP_16SD → / → PP_t05 16S ribosomal RNA/tRNA‑Ile
RA 699,725 A→G 60.0% intergenic (+115/‑129) PP_t06 → / → PP_23SD tRNA‑Ala/23S ribosomal RNA
RA 743,451 G→T 9.7% intergenic (+127/+147) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 743,453 T→C 9.7% intergenic (+129/+145) PP_0635 → / ← PP_0636 group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA 794,611 G→A 11.4% L250L (CTG→CTA)  PP_0680 → ATP‑dependent protease‑like protein
RA 798,667 T→G 16.0% intergenic (+19/+8) fklB‑I → / ← PP_0685 FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA 865,406 G→T 11.1% A141A (GCC→GCA)  upp ← uracil phosphoribosyltransferase
RA 865,409 A→C 10.0% V140V (GTT→GTG)  upp ← uracil phosphoribosyltransferase
RA 878,918 C→A 15.8% G148G (GGC→GGA)  PP_0763 → medium‑chain‑fatty acid CoA ligase
RA 1,027,999 G→C 16.6% A248A (GCC→GCG)  dppA‑III ← dipeptide ABC transporter substrate‑binding protein
RA 1,033,806 T→A 11.4% D141E (GAT→GAA)  PP_0891 → hypothetical protein
RA 1,033,811 G→C 12.1% R143P (CGG→CCG)  PP_0891 → hypothetical protein
RA 1,033,816 T→A 12.7% F145I (TTC→ATC)  PP_0891 → hypothetical protein
RA 1,070,265 G→C 15.2% intergenic (+62/+82) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA 1,070,268 G→C 15.6% intergenic (+65/+79) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA 1,088,540 A→T 12.9% intergenic (+31/‑223) pmbA → / → PP_0943 regulatory protease/hypothetical protein
RA 1,088,541 A→T 12.9% intergenic (+32/‑222) pmbA → / → PP_0943 regulatory protease/hypothetical protein
RA 1,096,710 T→A 16.7% E86V (GAA→GTA)  lptB ← ABC transporter ATP‑binding protein
RA 1,096,716 G→C 17.4% P84R (CCG→CGG)  lptB ← ABC transporter ATP‑binding protein
RA 1,096,722 T→A 18.2% Y82F (TAC→TTC)  lptB ← ABC transporter ATP‑binding protein
RA 1,121,441 T→G 12.1% S293A (TCG→GCG)  PP_0982 → YjgP/YjgQ family permease
RA 1,121,449 C→T 21.2% V295V (GTC→GTT)  PP_0982 → YjgP/YjgQ family permease
RA 1,121,450 A→G 21.2% N296D (AAC→GAC)  PP_0982 → YjgP/YjgQ family permease
RA 1,121,458 C→A 12.5% R298R (CGC→CGA)  PP_0982 → YjgP/YjgQ family permease
RA 1,145,439 C→T 30.8% intergenic (‑100/+41) hemO ← / ← PP_1006 heme oxygenase/heme receptor
RA 1,145,446 G→A 31.8% intergenic (‑107/+34) hemO ← / ← PP_1006 heme oxygenase/heme receptor
RA 1,145,447 T→C 30.6% intergenic (‑108/+33) hemO ← / ← PP_1006 heme oxygenase/heme receptor
RA 1,145,454 A→G 33.1% intergenic (‑115/+26) hemO ← / ← PP_1006 heme oxygenase/heme receptor
RA 1,184,591 G→C 28.9% intergenic (‑201/‑211) mltF ← / → purL membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA 1,184,594 G→C 22.3% intergenic (‑204/‑208) mltF ← / → purL membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA 1,184,611 C→T 18.6% intergenic (‑221/‑191) mltF ← / → purL membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA 1,226,713 T→A 30.6% intergenic (‑217/‑114) gltI ← / → PP_1072 glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA 1,226,716 T→A 27.0% intergenic (‑220/‑111) gltI ← / → PP_1072 glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA 1,239,707 G→C 13.4% G101A (GGG→GCG)  PP_1080 → molybdopterin‑binding oxidoreductase
RA 1,295,019 Δ1 bp 17.9% intergenic (+29/+41) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,024 T→A 30.5% intergenic (+34/+36) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,027 T→A 27.3% intergenic (+37/+33) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,295,031:1 +T 29.6% intergenic (+41/+29) slyB → / ← nhaA‑I outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA 1,327,127 C→T 35.2% intergenic (+97/‑196) PP_16SE → / → PP_23SE 16S ribosomal RNA/23S ribosomal RNA
RA 1,337,586 C→A 18.3% T99N (ACC→AAC)  PP_1163 → FAD‑binding oxidoreductase
RA 1,337,590 C→G 18.2% P100P (CCC→CCG)  PP_1163 → FAD‑binding oxidoreductase
RA 1,337,594 T→G 18.8% L102V (TTG→GTG)  PP_1163 → FAD‑binding oxidoreductase
RA 1,337,599 A→G 12.1% A103A (GCA→GCG)  PP_1163 → FAD‑binding oxidoreductase
RA 1,344,106 G→T 14.3% P13T (CCT→ACT)  PP_1168 ← TRAP dicarboxylate transporter subunit DctQ
RA 1,344,113 G→C 14.9% A10A (GCC→GCG) ‡ PP_1168 ← TRAP dicarboxylate transporter subunit DctQ
RA 1,344,114 G→C 14.8% A10G (GCC→GGC) ‡ PP_1168 ← TRAP dicarboxylate transporter subunit DctQ
RA 1,344,121 A→C 14.3% C8G (TGC→GGC)  PP_1168 ← TRAP dicarboxylate transporter subunit DctQ
RA 1,392,045 G→A 15.4% intergenic (+70/‑45) aspS → / → PP_1214 aspartate‑‑tRNA ligase/transcriptional regulator
RA 1,392,047 C→G 15.4% intergenic (+72/‑43) aspS → / → PP_1214 aspartate‑‑tRNA ligase/transcriptional regulator
RA 1,392,049 T→C 15.4% intergenic (+74/‑41) aspS → / → PP_1214 aspartate‑‑tRNA ligase/transcriptional regulator
RA 1,403,596 G→A 26.4% intergenic (‑56/+25) PP_1227 ← / ← PP_1228 membrane protein/methyl‑accepting chemotaxis transducer
RA 1,403,597 T→C 26.4% intergenic (‑57/+24) PP_1227 ← / ← PP_1228 membrane protein/methyl‑accepting chemotaxis transducer
RA 1,458,124 T→G 17.5% intergenic (+17/+23) PP_1276 → / ← algA hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA 1,458,126 A→T 17.4% intergenic (+19/+21) PP_1276 → / ← algA hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA 1,458,128 C→A 17.4% intergenic (+21/+19) PP_1276 → / ← algA hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA 1,526,622 T→A 13.5% I256N (ATT→AAT)  ddlB → D‑alanine‑‑D‑alanine ligase B
RA 1,526,631 A→C 10.3% E259A (GAA→GCA)  ddlB → D‑alanine‑‑D‑alanine ligase B
RA 1,564,973 A→T 23.4% L133Q (CTG→CAG)  pitB ← phosphate transporter
RA 1,566,193 G→T 24.9% intergenic (‑310/‑170) PP_1374 ← / → pcaR hypothetical protein/pca regulon transcriptional regulator
RA 1,566,194 A→T 25.0% intergenic (‑311/‑169) PP_1374 ← / → pcaR hypothetical protein/pca regulon transcriptional regulator
RA 1,566,195 A→T 25.0% intergenic (‑312/‑168) PP_1374 ← / → pcaR hypothetical protein/pca regulon transcriptional regulator
RA 1,566,196 A→C 25.0% intergenic (‑313/‑167) PP_1374 ← / → pcaR hypothetical protein/pca regulon transcriptional regulator
RA 1,603,504 G→A 12.5% A317V (GCC→GTC)  PP_1406 ← hypothetical protein
RA 1,637,367 A→T 22.4% intergenic (+34/+32) pdxJ → / ← PP_1437 pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA 1,637,368 A→T 22.8% intergenic (+35/+31) pdxJ → / ← PP_1437 pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA 1,637,378 G→A 16.0% intergenic (+45/+21) pdxJ → / ← PP_1437 pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA 1,637,384 A→G 16.0% intergenic (+51/+15) pdxJ → / ← PP_1437 pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA 1,637,386 C→T 16.7% intergenic (+53/+13) pdxJ → / ← PP_1437 pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA 1,638,457 C→T 12.1% E109K (GAA→AAA)  PP_1437 ← heavy metal sensor histidine kinase
RA 1,642,306 G→A 9.6% intergenic (‑92/+60) PP_1442 ← / ← lon‑I hypothetical protein/DNA‑binding ATP‑dependent protease
RA 1,642,313 G→C 13.2% intergenic (‑99/+53) PP_1442 ← / ← lon‑I hypothetical protein/DNA‑binding ATP‑dependent protease
RA 1,642,327 G→C 11.4% intergenic (‑113/+39) PP_1442 ← / ← lon‑I hypothetical protein/DNA‑binding ATP‑dependent protease
RA 1,646,976 C→T 17.0% Q141Q (CAG→CAA)  gcd ← quinoprotein glucose dehydrogenase
RA 1,683,290 C→G 16.0% intergenic (+57/‑174) recJ → / → PP_1478 ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA 1,683,293 C→G 16.0% intergenic (+60/‑171) recJ → / → PP_1478 ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA 1,691,825 C→A 21.3% intergenic (+50/‑121) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,828 T→G 19.5% intergenic (+53/‑118) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,838 C→G 16.7% intergenic (+63/‑108) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,691,839 G→A 16.7% intergenic (+64/‑107) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 1,707,269 G→C 16.0% intergenic (+45/+97) PP_1501 → / ← PP_1502 hypothetical protein/OmpA family protein
RA 1,707,272 G→C 15.4% intergenic (+48/+94) PP_1501 → / ← PP_1502 hypothetical protein/OmpA family protein
RA 1,738,868 T→A 13.7% I123F (ATC→TTC)  PP_1532 ← putative Phage integrase
RA 1,761,969 A→T 20.7% N359Y (AAC→TAC) ‡ PP_1567 → capsid protein
RA 1,761,970 A→T 20.7% N359I (AAC→ATC) ‡ PP_1567 → capsid protein
RA 1,810,377 T→G 31.3% intergenic (+96/‑73) eno → / → ftsB enolase/cell division protein
RA 1,810,378 C→A 31.2% intergenic (+97/‑72) eno → / → ftsB enolase/cell division protein
RA 1,811,676 T→A 7.3% T262S (ACG→TCG)  PP_1615 ← LysR family transcriptional regulator
RA 1,811,679 T→A 7.7% N261Y (AAT→TAT)  PP_1615 ← LysR family transcriptional regulator
RA 1,819,831 Δ1 bp 18.2% intergenic (+26/‑449) rpoS → / → PP_1624 RNA polymerase sigma S factor/group II intron‑encoding maturase
RA 1,819,833 T→A 18.2% intergenic (+28/‑447) rpoS → / → PP_1624 RNA polymerase sigma S factor/group II intron‑encoding maturase
RA 1,819,837:1 +A 16.7% intergenic (+32/‑443) rpoS → / → PP_1624 RNA polymerase sigma S factor/group II intron‑encoding maturase
RA 1,819,838 T→C 16.7% intergenic (+33/‑442) rpoS → / → PP_1624 RNA polymerase sigma S factor/group II intron‑encoding maturase
RA 1,851,912 A→G 100% D319G (GAC→GGC)  relA → ATP:GTP 3'‑pyrophosphotransferase
RA 1,926,529 T→C 21.0% K127E (AAG→GAG)  PP_1726 ← ABC transporter substrate‑binding protein
RA 1,955,252 T→A 22.2% intergenic (+39/‑154) PP_1752 → / → PP_1753 hypothetical protein/DMT superfamily permease
RA 1,955,253 T→A 22.2% intergenic (+40/‑153) PP_1752 → / → PP_1753 hypothetical protein/DMT superfamily permease
RA 1,982,924 A→G 15.4% Q278R (CAG→CGG)  PP_1775 → metallo‑beta‑lactamase family protein
RA 1,998,006 A→C 13.4% I140M (ATT→ATG)  rfbD ← dTDP‑4‑dehydrorhamnose reductase
RA 1,998,010 G→C 13.4% A139G (GCC→GGC)  rfbD ← dTDP‑4‑dehydrorhamnose reductase
RA 1,998,014 G→T 16.9% H138N (CAT→AAT)  rfbD ← dTDP‑4‑dehydrorhamnose reductase
RA 2,068,194 A→T 26.7% intergenic (‑96/+25) plsC ← / ← PP_1845 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA 2,068,195 A→T 26.7% intergenic (‑97/+24) plsC ← / ← PP_1845 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA 2,092,423 G→A 12.8% intergenic (+26/+65) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,425 T→C 12.9% intergenic (+28/+63) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,428 G→A 12.9% intergenic (+31/+60) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,430 T→C 12.5% intergenic (+33/+58) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,458 C→T 16.7% intergenic (+61/+30) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,459 T→C 17.4% intergenic (+62/+29) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,092,470 T→A 17.1% intergenic (+73/+18) deaD → / ← ygiD ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA 2,104,740 A→G 14.8% F63L (TTC→CTC)  PP_1879 ← hypothetical protein
RA 2,113,722 A→C 11.8% Y203D (TAT→GAT)  PP_1882 ← membrane protein
RA 2,165,021 A→G 10.8% V187A (GTA→GCA) ‡ PP_1920 ← hypothetical protein
RA 2,165,022 C→T 10.8% V187I (GTA→ATA) ‡ PP_1920 ← hypothetical protein
RA 2,253,967 G→A 14.3% K81K (AAG→AAA)  leuB → 3‑isopropylmalate dehydrogenase
RA 2,254,045 G→C 16.0% P107P (CCG→CCC)  leuB → 3‑isopropylmalate dehydrogenase
RA 2,256,277 Δ1 bp 12.9% intergenic (+294/‑410) asd → / → PP_1990 aspartate‑semialdehyde dehydrogenase/transposase
RA 2,256,278 Δ1 bp 19.4% intergenic (+295/‑409) asd → / → PP_1990 aspartate‑semialdehyde dehydrogenase/transposase
RA 2,282,813 T→G 28.6% intergenic (‑162/+67) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,282,817 G→C 27.8% intergenic (‑166/+63) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,282,818 G→C 30.3% intergenic (‑167/+62) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,282,822 C→A 28.6% intergenic (‑171/+58) PP_2010 ← / ← PP_2011 cytochrome b561/hypothetical protein
RA 2,288,420 C→A 11.8% Y220* (TAC→TAA)  pepN → aminopeptidase N
RA 2,297,573 G→T 9.1% G864G (GGC→GGA)  sbcC ← exonuclease subunit SbcC
RA 2,404,452 A→G 11.7% S346G (AGC→GGC)  PP_2106 → ammonium transporter
RA 2,568,736 T→A 18.4% Q285H (CAA→CAT)  PP_2252 ← hypothetical protein
RA 2,568,739 T→G 18.5% E284D (GAA→GAC)  PP_2252 ← hypothetical protein
RA 2,568,744 C→A 16.7% V283F (GTC→TTC)  PP_2252 ← hypothetical protein
RA 2,568,747 T→A 17.1% M282L (ATG→TTG)  PP_2252 ← hypothetical protein
RA 2,628,429 A→C 18.1% A16A (GCA→GCC)  clpP → ATP‑dependent Clp protease proteolytic subunit
RA 2,628,430 G→T 18.5% G17C (GGC→TGC)  clpP → ATP‑dependent Clp protease proteolytic subunit
RA 2,630,918 G→A 13.7% D114N (GAC→AAC)  lon‑II → DNA‑binding ATP‑dependent protease
RA 2,669,714 T→G 11.4% intergenic (+38/+37) prpD → / ← acnB 2‑methylcitrate dehydratase/aconitate hydratase B
RA 2,669,717 C→A 11.7% intergenic (+41/+34) prpD → / ← acnB 2‑methylcitrate dehydratase/aconitate hydratase B
RA 2,711,029 T→G 12.5% intergenic (+289/+25) PP_2373 → / ← PP_2374 hypothetical protein/hypothetical protein
RA 2,711,030 C→A 12.6% intergenic (+290/+24) PP_2373 → / ← PP_2374 hypothetical protein/hypothetical protein
RA 2,719,298 Δ1 bp 18.2% coding (382/585 nt) nfuA → Fe/S biogenesis protein NfuA
RA 2,719,306:1 +T 17.4% coding (390/585 nt) nfuA → Fe/S biogenesis protein NfuA
RA 2,769,912 G→C 14.4% A89G (GCC→GGC)  PP_2422 ← hypothetical protein
RA 2,799,214 A→G 21.4% intergenic (‑185/+31) PP_2452 ← / ← ansB hypothetical protein/glutaminase‑asparaginase
RA 2,799,220 C→T 21.2% intergenic (‑191/+25) PP_2452 ← / ← ansB hypothetical protein/glutaminase‑asparaginase
RA 2,799,223 A→G 21.4% intergenic (‑194/+22) PP_2452 ← / ← ansB hypothetical protein/glutaminase‑asparaginase
RA 2,799,229 C→T 20.7% intergenic (‑200/+16) PP_2452 ← / ← ansB hypothetical protein/glutaminase‑asparaginase
RA 2,812,818 C→T 14.9% intergenic (+69/‑41) rplT → / → pheS 50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA 2,812,821 C→G 14.3% intergenic (+72/‑38) rplT → / → pheS 50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA 2,812,824 A→G 14.3% intergenic (+75/‑35) rplT → / → pheS 50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA 2,868,919 G→C 29.5% intergenic (+415/‑516) PP_2520 → / → PP_2522 hypothetical protein/transposase
RA 2,868,920 G→C 30.0% intergenic (+416/‑515) PP_2520 → / → PP_2522 hypothetical protein/transposase
RA 2,873,690 G→A 13.3% V143M (GTG→ATG) ‡ cigR → membrane protein
RA 2,873,691 T→C 13.4% V143A (GTG→GCG) ‡ cigR → membrane protein
RA 2,925,446 A→T 19.4% intergenic (‑151/+414) PP_2563 ← / ← PP_2564 antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
RA 2,951,377 G→C 21.8% intergenic (‑113/+48) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,951,384 A→C 23.3% intergenic (‑120/+41) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,951,385 G→T 23.3% intergenic (‑121/+40) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 2,951,392 G→C 23.8% intergenic (‑128/+33) oguA ← / ← PP_2585 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA 3,048,647 G→T 33.3% intergenic (+59/‑237) PP_2661 → / → PP_2662 hypothetical protein/hypothetical protein
RA 3,048,648 A→C 32.5% intergenic (+60/‑236) PP_2661 → / → PP_2662 hypothetical protein/hypothetical protein
RA 3,116,218 G→A 15.4% G305S (GGC→AGC)  PP_2732 → hypothetical protein
RA 3,146,654 T→C 20.0% intergenic (+47/+19) PP_2761 → / ← sfnA ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA 3,146,657 G→A 20.0% intergenic (+50/+16) PP_2761 → / ← sfnA ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA 3,166,099 G→C 26.3% G163A (GGC→GCC)  PP_2780 → 3‑oxoacyl‑ACP synthase
RA 3,183,925 G→A 12.8% V124M (GTG→ATG) ‡ PP_2794 → short‑chain dehydrogenase/reductase family oxidoreductase
RA 3,183,926 T→C 15.7% V124A (GTG→GCG) ‡ PP_2794 → short‑chain dehydrogenase/reductase family oxidoreductase
RA 3,197,222 G→A 10.3% A493V (GCG→GTG)  ethA ← FAD‑containing monooxygenase EthA
RA 3,215,016 G→C 20.0% P296P (CCG→CCC)  mexD → multidrug RND transporter MexD
RA 3,217,499 C→T 10.7% D82D (GAC→GAT)  oprJ → outer membrane protein OprJ
RA 3,217,500 A→G 10.8% I83V (ATC→GTC)  oprJ → outer membrane protein OprJ
RA 3,223,265 A→C 21.1% intergenic (‑529/+31) PP_2823 ← / ← PP_2824 methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator
RA 3,223,266 G→T 22.2% intergenic (‑530/+30) PP_2823 ← / ← PP_2824 methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator
RA 3,229,149 G→A 9.1% R188H (CGT→CAT)  PP_2829 → GntR family transcriptional regulator
RA 3,229,158 T→C 9.2% M191T (ATG→ACG)  PP_2829 → GntR family transcriptional regulator
RA 3,307,089 T→C 17.2% K185E (AAG→GAG)  csiR ← DNA‑binding transcriptional repressor
RA 3,307,090 G→A 16.7% L184L (CTC→CTT)  csiR ← DNA‑binding transcriptional repressor
RA 3,313,868 C→A 16.6% intergenic (+30/‑129) hemB → / → proP 5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA 3,313,871 T→G 19.4% intergenic (+33/‑126) hemB → / → proP 5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA 3,344,389 C→G 19.2% Q261H (CAG→CAC)  PP_2941 ← hypothetical protein
RA 3,393,690 C→G 10.2% A254P (GCC→CCC)  PP_2997 ← protein CnmA
RA 3,393,694 T→A 11.0% T252T (ACA→ACT) ‡ PP_2997 ← protein CnmA
RA 3,393,695 G→C 10.8% T252R (ACA→AGA) ‡ PP_2997 ← protein CnmA
RA 3,393,696 T→A 11.3% T252S (ACA→TCA) ‡ PP_2997 ← protein CnmA
RA 3,393,700 C→G 11.7% G250G (GGG→GGC)  PP_2997 ← protein CnmA
RA 3,430,202 C→T 16.2% S126L (TCG→TTG) ‡ PP_3045 → ATP‑dependent protease ClpP
RA 3,430,203 G→C 17.0% S126S (TCG→TCC) ‡ PP_3045 → ATP‑dependent protease ClpP
RA 3,430,204 A→G 17.6% N127D (AAT→GAT)  PP_3045 → ATP‑dependent protease ClpP
RA 3,446,939 C→T 15.4% Y70Y (TAC→TAT)  PP_3066 → lytic enzyme
RA 3,467,034 G→A 12.5% A89A (GCC→GCT)  PP_5560 ← hypothetical protein
RA 3,489,703 G→C 19.3% A577A (GCC→GCG)  clpV ← protein ClpV1
RA 3,489,707 G→T 19.7% P576Q (CCG→CAG)  clpV ← protein ClpV1
RA 3,489,710 A→C 20.2% L575R (CTG→CGG)  clpV ← protein ClpV1
RA 3,489,714 G→C 20.9% R574G (CGC→GGC)  clpV ← protein ClpV1
RA 3,554,502 G→C 13.8% L25L (CTG→CTC)  PP_3139 → group 1 family glycosyl transferase
RA 3,554,503 G→C 13.8% E26Q (GAG→CAG)  PP_3139 → group 1 family glycosyl transferase
RA 3,624,187 G→C 14.3% intergenic (‑92/+81) PP_3194 ← / ← PP_3195 hypothetical protein/hypothetical protein
RA 3,628,125 C→G 11.7% intergenic (+11/‑129) PP_3198 → / → PP_3199 2Fe‑2S ferredoxin/monooxygenase
RA 3,692,662 T→A 21.0% Q336L (CAG→CTG)  PP_3259 ← acyl‑CoA dehydrogenase‑related protein
RA 3,713,613 A→T 13.3% L315Q (CTG→CAG)  paaK ← phenylacetate‑CoA ligase
RA 3,713,616 A→T 13.3% L314Q (CTG→CAG)  paaK ← phenylacetate‑CoA ligase
RA 3,751,557 C→G 14.8% R790P (CGG→CCG)  PP_3316 ← chaperone‑associated ATPase
RA 3,751,560 C→G 14.8% R789P (CGG→CCG)  PP_3316 ← chaperone‑associated ATPase
RA 3,762,985 A→T 13.3% N62I (AAC→ATC)  PP_3326 → hypothetical protein
RA 3,762,990 A→T 15.2% I64F (ATC→TTC)  PP_3326 → hypothetical protein
RA 3,789,805 G→C 14.3% L289L (CTG→CTC)  atsA → arylsulfatase
RA 3,800,887 C→T 26.9% intergenic (+54/+25) PP_3360 → / ← PP_3361 membrane protein/aminotransferase
RA 3,813,033 G→A 26.7% A23T (GCC→ACC)  PP_3369 → LysR family transcriptional regulator
RA 3,848,513 A→T 9.9% P78P (CCA→CCT)  PP_3397 → hypothetical protein
RA 3,848,519 Δ1 bp 9.5% coding (240/2268 nt) PP_3397 → hypothetical protein
RA 3,848,525:1 +T 10.0% coding (246/2268 nt) PP_3397 → hypothetical protein
RA 3,908,447 C→T 11.8% L118L (CTG→TTG)  PP_3450 → TPR repeat‑containing protein
RA 3,962,539 G→T 14.8% K231N (AAG→AAT)  PP_3492 → acyl‑CoA dehydrogenase
RA 3,962,544 T→A 15.4% L233Q (CTG→CAG)  PP_3492 → acyl‑CoA dehydrogenase
RA 3,962,549 A→C 15.9% I235L (ATT→CTT)  PP_3492 → acyl‑CoA dehydrogenase
RA 3,968,935 A→C 30.4% D340A (GAT→GCT)  PP_3498 → transposase
RA 4,042,365 C→A 20.1% L137I (CTC→ATC) ‡ PP_3563 → hypothetical protein
RA 4,042,366 T→G 20.1% L137R (CTC→CGC) ‡ PP_3563 → hypothetical protein
RA 4,042,376 C→T 19.0% R140R (CGC→CGT)  PP_3563 → hypothetical protein
RA 4,049,951 A→G 19.5% intergenic (+40/‑61) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,049,954 C→G 20.0% intergenic (+43/‑58) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,049,957 C→T 20.0% intergenic (+46/‑55) quiA → / → oprB‑III quinate dehydrogenase/carbohydrate‑selective porin
RA 4,082,784 C→A 14.8% L229M (CTG→ATG) ‡ PP_3592 → RpiR family transcriptional regulator
RA 4,082,785 T→G 14.3% L229R (CTG→CGG) ‡ PP_3592 → RpiR family transcriptional regulator
RA 4,141,212 T→A 22.7% L44Q (CTG→CAG)  PP_3645 → L‑proline amide hydrolase
RA 4,143,926 T→A 42.5% intergenic (+35/‑88) PP_3647 → / → PP_3648 oxidoreductase/carboxymuconolactone decarboxylase family protein
RA 4,143,927 T→A 45.4% intergenic (+36/‑87) PP_3647 → / → PP_3648 oxidoreductase/carboxymuconolactone decarboxylase family protein
RA 4,162,143 T→C 15.4% intergenic (‑43/+34) PP_3663 ← / ← pssA GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA 4,162,147 T→A 16.7% intergenic (‑47/+30) PP_3663 ← / ← pssA GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA 4,162,148 T→A 16.7% intergenic (‑48/+29) PP_3663 ← / ← pssA GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA 4,162,152 G→A 15.4% intergenic (‑52/+25) PP_3663 ← / ← pssA GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA 4,241,017 A→G 31.3% I242I (ATT→ATC) ‡ PP_3718 ← aminotransferase
RA 4,241,018 A→G 31.4% I242T (ATT→ACT) ‡ PP_3718 ← aminotransferase
RA 4,241,025 C→T 31.5% V240M (GTG→ATG)  PP_3718 ← aminotransferase
RA 4,241,026 C→T 26.4% G239G (GGG→GGA)  PP_3718 ← aminotransferase
RA 4,245,021 G→T 24.0% A15D (GCT→GAT)  aruH ← arginine‑‑pyruvate transaminase AruH
RA 4,245,027 T→G 23.6% D13A (GAC→GCC)  aruH ← arginine‑‑pyruvate transaminase AruH
RA 4,245,030 C→A 24.5% G12V (GGC→GTC)  aruH ← arginine‑‑pyruvate transaminase AruH
RA 4,245,036 A→C 21.3% I10S (ATC→AGC)  aruH ← arginine‑‑pyruvate transaminase AruH
RA 4,252,257 T→G 11.2% intergenic (‑181/+59) PP_3726 ← / ← rocE enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA 4,269,861 Δ1 bp 16.7% intergenic (‑517/‑44) PP_3740 ← / → mrdA‑I MFS transporter/transpeptidase
RA 4,269,863 C→G 17.5% intergenic (‑519/‑42) PP_3740 ← / → mrdA‑I MFS transporter/transpeptidase
RA 4,269,870 C→G 16.7% intergenic (‑526/‑35) PP_3740 ← / → mrdA‑I MFS transporter/transpeptidase
RA 4,269,872:1 +C 16.7% intergenic (‑528/‑33) PP_3740 ← / → mrdA‑I MFS transporter/transpeptidase
RA 4,294,011 C→G 17.9% D13H (GAC→CAC)  PP_3763 ← precorrin‑6A synthase
RA 4,301,102 A→G 16.5% T75A (ACG→GCG)  PP_3774 → hypothetical protein
RA 4,301,115 C→T 15.9% A79V (GCC→GTC)  PP_3774 → hypothetical protein
RA 4,340,119 A→T 32.9% intergenic (+60/‑271) ribAB‑II → / → PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA 4,340,120 G→C 37.6% intergenic (+61/‑270) ribAB‑II → / → PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA 4,340,125 A→G 45.4% intergenic (+66/‑265) ribAB‑II → / → PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA 4,340,126 C→T 45.4% intergenic (+67/‑264) ribAB‑II → / → PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA 4,340,127 A→G 36.3% intergenic (+68/‑263) ribAB‑II → / → PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA 4,340,128 C→T 44.9% intergenic (+69/‑262) ribAB‑II → / → PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA 4,340,133 G→C 41.7% intergenic (+74/‑257) ribAB‑II → / → PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA 4,340,134 A→T 41.3% intergenic (+75/‑256) ribAB‑II → / → PP_3814 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA 4,348,749 A→G 40.7% intergenic (‑70/+404) PP_3820 ← / ← galU group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA 4,355,090 Δ1 bp 11.8% coding (246/681 nt) modB → molybdate ABC transporter permease ModB
RA 4,355,094:1 +C 11.1% coding (250/681 nt) modB → molybdate ABC transporter permease ModB
RA 4,437,219 A→G 13.3% H112R (CAC→CGC)  PP_3932 → diguanylate cyclase
RA 4,437,224 C→T 13.8% R114C (CGC→TGC)  PP_3932 → diguanylate cyclase
RA 4,504,965 G→C 31.6% Q9H (CAG→CAC)  tusE → sulfur transfer protein
RA 4,504,966 G→C 31.6% V10L (GTG→CTG)  tusE → sulfur transfer protein
RA 4,512,506 C→A 29.2% G9V (GGT→GTT)  lolA ← outer membrane lipoprotein carrier protein
RA 4,512,509 T→G 30.4% N8T (AAC→ACC)  lolA ← outer membrane lipoprotein carrier protein
RA 4,520,498 A→T 29.2% intergenic (+45/+27) cspD → / ← icd DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA 4,520,508 A→G 27.3% intergenic (+55/+17) cspD → / ← icd DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA 4,592,336 C→G 13.6% D183E (GAC→GAG)  mccA → methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
RA 4,592,340 C→A 10.8% L185M (CTG→ATG) ‡ mccA → methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
RA 4,592,341 T→G 10.3% L185R (CTG→CGG) ‡ mccA → methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
RA 4,592,345 C→G 10.3% A186A (GCC→GCG)  mccA → methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
RA 4,635,557 G→A 100% T82M (ACG→ATG)  uvrY ← BarA/UvrY two‑componenent system response regulator
RA 4,672,979 C→A 18.4% V26L (GTG→TTG)  PP_4136 ← LuxR family transcriptional regulator
RA 4,672,980 T→G 18.5% Q25H (CAA→CAC)  PP_4136 ← LuxR family transcriptional regulator
RA 4,674,232 C→T 14.7% R320C (CGC→TGC)  PP_4137 → outer membrane siderophore receptor
RA 4,675,051 C→T 13.3% R593C (CGC→TGC)  PP_4137 → outer membrane siderophore receptor
RA 4,716,693 G→C 10.8% Q626H (CAG→CAC)  PP_4173 → two‑component system sensor histidine kinase/response regulator
RA 4,732,541 G→C 23.6% A89G (GCC→GGC)  sucB ← 2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA 4,732,554 G→C 23.5% P85A (CCT→GCT)  sucB ← 2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA 4,741,273:1 +C 100% intergenic (+464/+288) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,275 A→G 100% intergenic (+466/+286) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,277 C→T 100% intergenic (+468/+284) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,280 C→T 100% intergenic (+471/+281) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283 C→G 100% intergenic (+474/+278) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,285 2 bp→CT 100% intergenic (+476/+275) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,770,357 G→A 10.5% V2985V (GTC→GTT)  pvdD ← non‑ribosomal peptide synthetase
RA 4,824,317 G→C 11.1% S2306R (AGC→AGG)  pvdL ← non‑ribosomal peptide synthetase
RA 4,827,099 C→A 11.6% S1379I (AGT→ATT) ‡ pvdL ← non‑ribosomal peptide synthetase
RA 4,827,100 T→G 11.7% S1379R (AGT→CGT) ‡ pvdL ← non‑ribosomal peptide synthetase
RA 4,837,326 A→G 14.8% S430G (AGC→GGC)  ccoN‑I → cbb3‑type cytochrome c oxidase subunit 1
RA 4,842,941 Δ1 bp 46.2% intergenic (+40/‑257) ccoP‑II → / → PP_4259 cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA 4,842,949:1 +G 41.9% intergenic (+48/‑249) ccoP‑II → / → PP_4259 cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA 4,860,168 A→G 13.3% I309I (ATT→ATC)  ligA ← DNA ligase
RA 4,860,171 C→T 14.3% A308A (GCG→GCA)  ligA ← DNA ligase
RA 4,889,791 A→T 17.1% K14* (AAG→TAG) ‡ glxR → 2‑hydroxy‑3‑oxopropionate reductase
RA 4,889,792 A→T 20.8% K14M (AAG→ATG) ‡ glxR → 2‑hydroxy‑3‑oxopropionate reductase
RA 4,894,259 G→C 12.3% G161A (GGC→GCC)  PP_4302 → urea transporter
RA 4,895,519 G→A 15.2% intergenic (‑75/‑72) PP_4303 ← / → PP_4304 hypothetical protein/VIC family cation transporter
RA 4,900,110 A→G 38.0% intergenic (+26/‑472) PP_4308 → / → PP_4309 AsnC family transcriptional regulator/NCS1 family transporter
RA 4,900,114 G→A 33.0% intergenic (+30/‑468) PP_4308 → / → PP_4309 AsnC family transcriptional regulator/NCS1 family transporter
RA 4,900,115 T→C 33.4% intergenic (+31/‑467) PP_4308 → / → PP_4309 AsnC family transcriptional regulator/NCS1 family transporter
RA 4,900,119 C→T 33.1% intergenic (+35/‑463) PP_4308 → / → PP_4309 AsnC family transcriptional regulator/NCS1 family transporter
RA 4,907,454 C→G 20.0% R127P (CGG→CCG)  PP_4316 ← D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA 4,915,793 C→T 11.4% G114S (GGC→AGC)  ccmC ← protoheme IX reservoir complex subunit
RA 4,915,797 A→T 11.4% V112V (GTT→GTA)  ccmC ← protoheme IX reservoir complex subunit
RA 4,947,413 C→G 100% *90S (TGA→TCA)  fliQ ← flagellar export apparatus protein
RA 4,970,038 T→G 15.5% T84P (ACT→CCT)  fliC ← flagellin
RA 4,970,049 C→A 14.8% G80V (GGC→GTC)  fliC ← flagellin
RA 4,992,076 A→T 25.0% intergenic (‑183/‑16) bkdR ← / → bkdAA Bkd operon transcriptional regulator/branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
RA 5,013,339 G→A 25.0% A38T (GCG→ACG)  PP_5678 → hypothetical protein
RA 5,015,960 A→T 26.1% intergenic (‑175/+59) PP_5679 ← / ← PP_4421 hypothetical protein/aminotransferase
RA 5,015,961 A→T 25.0% intergenic (‑176/+58) PP_5679 ← / ← PP_4421 hypothetical protein/aminotransferase
RA 5,030,796 A→G 20.0% intergenic (+34/‑461) PP_4433 → / → dadA‑I amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA 5,030,799 C→T 20.8% intergenic (+37/‑458) PP_4433 → / → dadA‑I amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA 5,075,425 C→T 14.3% intergenic (+141/+179) PP_4468 → / ← PP_t58 Cro/CI family transcriptional regulator/tRNA‑Arg
RA 5,075,430 A→G 12.9% intergenic (+146/+174) PP_4468 → / ← PP_t58 Cro/CI family transcriptional regulator/tRNA‑Arg
RA 5,076,041 A→G 8.7% V183A (GTC→GCC)  phnN ← ribose 1,5‑bisphosphate phosphokinase
RA 5,079,174 T→A 22.2% intergenic (‑371/+26) mgtE ← / ← PP_t56 magnesium transporter/tRNA‑Arg
RA 5,079,177 T→A 21.0% intergenic (‑374/+23) mgtE ← / ← PP_t56 magnesium transporter/tRNA‑Arg
RA 5,115,751 T→G 31.1% H28P (CAC→CCC)  PP_4500 ← TrpH family protein
RA 5,120,102 G→T 13.3% H68N (CAC→AAC)  PP_4506 ← nitroreductase family protein
RA 5,173,292 T→C 29.6% intergenic (‑285/+47) fadD‑I ← / ← fadD‑II long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA 5,173,295 G→C 29.6% intergenic (‑288/+44) fadD‑I ← / ← fadD‑II long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA 5,173,296 G→C 29.7% intergenic (‑289/+43) fadD‑I ← / ← fadD‑II long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA 5,173,299 G→A 29.6% intergenic (‑292/+40) fadD‑I ← / ← fadD‑II long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA 5,182,972 G→C 9.2% I270M (ATC→ATG)  PP_4563 ← hypothetical protein
RA 5,194,935 T→G 26.2% intergenic (+29/+24) PP_4574 → / ← PP_4575 hypothetical protein/urea amidolyase‑like protein
RA 5,194,936 C→A 26.1% intergenic (+30/+23) PP_4574 → / ← PP_4575 hypothetical protein/urea amidolyase‑like protein
RA 5,195,947 C→G 9.5% D206H (GAC→CAC)  ybgJ ← allophanate hydrolase subunit 1
RA 5,217,251 C→A 12.3% P92P (CCC→CCA)  moaA → cyclic pyranopterin monophosphate synthase
RA 5,229,218 G→A 14.3% intergenic (‑112/+64) PP_4606 ← / ← PP_4607 ferric siderophore receptor/transmembrane sensor
RA 5,229,227 G→A 17.9% intergenic (‑121/+55) PP_4606 ← / ← PP_4607 ferric siderophore receptor/transmembrane sensor
RA 5,229,239 Δ1 bp 16.2% intergenic (‑133/+43) PP_4606 ← / ← PP_4607 ferric siderophore receptor/transmembrane sensor
RA 5,229,243 C→G 16.8% intergenic (‑137/+39) PP_4606 ← / ← PP_4607 ferric siderophore receptor/transmembrane sensor
RA 5,229,246 C→G 15.7% intergenic (‑140/+36) PP_4606 ← / ← PP_4607 ferric siderophore receptor/transmembrane sensor
RA 5,229,249:1 +C 18.2% intergenic (‑143/+33) PP_4606 ← / ← PP_4607 ferric siderophore receptor/transmembrane sensor
RA 5,247,865 G→C 11.8% R282G (CGG→GGG)  PP_4623 ← hypothetical protein
RA 5,251,032 C→A 20.0% G26V (GGT→GTT)  cidA ← murein hydrolases holin regulator
RA 5,275,342 T→G 17.4% E468A (GAG→GCG)  cioA ← cyanide insensitive ubiquinol oxidase subunit I
RA 5,275,345 C→A 17.4% R467L (CGC→CTC)  cioA ← cyanide insensitive ubiquinol oxidase subunit I
RA 5,334,378 G→T 9.7% V254F (GTC→TTC)  PP_4695 → two‑component system sensor histidine kinase
RA 5,363,720 C→T 13.8% A32T (GCC→ACC)  glmM ← phosphoglucosamine mutase
RA 5,368,718 G→T 21.7% R14S (CGC→AGC)  greA ← transcription elongation factor GreA
RA 5,368,719 A→C 20.8% A13A (GCT→GCG)  greA ← transcription elongation factor GreA
RA 5,383,225 G→A 20.0% P35L (CCG→CTG)  pdhR ← DNA‑binding transcriptional regulator LldR
RA 5,389,315 T→A 16.1% L926Q (CTG→CAG)  dld2 → D‑lactate dehydrogenase
RA 5,424,552:1 +T 12.1% coding (103/915 nt) PP_4764 → histone deacetylase family protein
RA 5,458,940:1 +A 17.2% intergenic (+17/‑45) leuS → / → PP_4795 leucine‑‑tRNA ligase/lipoprotein
RA 5,458,946 Δ1 bp 17.2% intergenic (+23/‑39) leuS → / → PP_4795 leucine‑‑tRNA ligase/lipoprotein
RA 5,478,830 G→C 17.4% I33M (ATC→ATG)  PP_4816 ← hypothetical protein
RA 5,489,826:1 +C 18.2% coding (260/597 nt) PP_4825 → MarC family membrane protein
RA 5,489,830 Δ1 bp 17.1% coding (264/597 nt) PP_4825 → MarC family membrane protein
RA 5,491,538 G→A 20.8% intergenic (‑26/+26) PP_5715 ← / ← PP_5716 hypothetical protein/hypothetical protein
RA 5,491,540 C→G 16.7% intergenic (‑28/+24) PP_5715 ← / ← PP_5716 hypothetical protein/hypothetical protein
RA 5,491,542 T→C 16.7% intergenic (‑30/+22) PP_5715 ← / ← PP_5716 hypothetical protein/hypothetical protein
RA 5,491,549 A→G 17.4% intergenic (‑37/+15) PP_5715 ← / ← PP_5716 hypothetical protein/hypothetical protein
RA 5,538,335 G→T 12.9% W122L (TGG→TTG)  PP_4871 → lysine decarboxylase family protein
RA 5,539,798 G→C 18.2% I412M (ATC→ATG) ‡ PP_4872 ← hypothetical protein
RA 5,539,800 T→C 18.2% I412V (ATC→GTC) ‡ PP_4872 ← hypothetical protein
RA 5,557,973 T→G 15.5% intergenic (‑293/+38) PP_4888 ← / ← purA methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA 5,557,974 C→A 15.4% intergenic (‑294/+37) PP_4888 ← / ← purA methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA 5,557,975 T→G 15.4% intergenic (‑295/+36) PP_4888 ← / ← purA methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA 5,557,976 C→A 15.3% intergenic (‑296/+35) PP_4888 ← / ← purA methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA 5,564,387 C→A 100% V62L (GTA→TTA)  hfq ← RNA‑binding protein Hfq
RA 5,566,464 T→A 16.3% Q358L (CAG→CTG)  mutL ← DNA mismatch repair protein MutL
RA 5,566,467 T→A 16.3% Q357L (CAG→CTG)  mutL ← DNA mismatch repair protein MutL
RA 5,600,638 C→A 22.3% G965G (GGG→GGT)  PP_4924 ← subtilase family serine protease
RA 5,602,232 T→A 12.1% D434V (GAT→GTT)  PP_4924 ← subtilase family serine protease
RA 5,602,235 G→C 12.1% A433G (GCC→GGC)  PP_4924 ← subtilase family serine protease
RA 5,602,238 T→A 11.8% N432I (AAC→ATC)  PP_4924 ← subtilase family serine protease
RA 5,610,450 G→A 100% S39L (TCG→TTG)  PP_4929 ← LysR family transcriptional regulator
RA 5,616,602 C→T 12.1% A304T (GCC→ACC)  msbA ← lipid A export ATP‑binding/permease MsbA
RA 5,815,592 G→T 17.4% intergenic (+20/+71) PP_5090 → / ← PP_5091 cell division protein/membrane protein
RA 5,815,595 A→C 17.4% intergenic (+23/+68) PP_5090 → / ← PP_5091 cell division protein/membrane protein
RA 5,815,600 A→G 16.7% intergenic (+28/+63) PP_5090 → / ← PP_5091 cell division protein/membrane protein
RA 5,844,168 A→G 11.1% D245G (GAC→GGC)  PP_5122 → GMC family oxidoreductase
RA 5,844,171 C→T 11.1% A246V (GCC→GTC)  PP_5122 → GMC family oxidoreductase
RA 5,907,962:1 +G 13.8% coding (61/1095 nt) spuE ← spermidine/putrescine ABC transporter substrate‑binding protein
RA 5,907,968 Δ1 bp 13.3% coding (55/1095 nt) spuE ← spermidine/putrescine ABC transporter substrate‑binding protein
RA 5,962,586 G→C 14.4% V69V (GTG→GTC)  dapF → diaminopimelate epimerase
RA 5,962,587 G→C 14.3% D70H (GAC→CAC)  dapF → diaminopimelate epimerase
RA 5,968,245 C→T 11.8% intergenic (‑112/+23) glnK ← / ← PP_5723 NRII(GlnL/NtrB) phosphatase activator/hypothetical protein
RA 5,988,865 G→A 25.4% intergenic (+103/‑443) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,875 T→C 24.3% intergenic (+113/‑433) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,880 C→T 22.8% intergenic (+118/‑428) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,881 G→T 22.8% intergenic (+119/‑427) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,882 C→T 22.9% intergenic (+120/‑426) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,885 A→G 22.5% intergenic (+123/‑423) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,891 G→C 19.7% intergenic (+129/‑417) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,893 C→G 22.4% intergenic (+131/‑415) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,896 C→T 22.3% intergenic (+134/‑412) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,900 C→G 22.5% intergenic (+138/‑408) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,904 C→T 22.4% intergenic (+142/‑404) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,906 C→T 23.1% intergenic (+144/‑402) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,945 C→A 31.4% intergenic (+183/‑363) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,950 C→T 33.1% intergenic (+188/‑358) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,951 A→G 32.9% intergenic (+189/‑357) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,961 T→C 32.7% intergenic (+199/‑347) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 5,988,967 Δ1 bp 28.6% intergenic (+205/‑341) kefB‑III → / → PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA 6,015,921 T→A 31.1% T274S (ACG→TCG)  PP_5728 ← rhs repeat‑associated core domain‑containing protein
RA 6,027,278 A→T 12.9% F212Y (TTC→TAC) ‡ PP_5277 ← MFS transporter
RA 6,027,279 A→T 12.9% F212I (TTC→ATC) ‡ PP_5277 ← MFS transporter
RA 6,041,183 T→A 15.9% Q17H (CAA→CAT)  PP_5293 ← hypothetical protein
RA 6,042,393 G→C 12.9% E92Q (GAA→CAA) ‡ PP_5295 → hypothetical protein
RA 6,042,395 A→T 13.4% E92D (GAA→GAT) ‡ PP_5295 → hypothetical protein
RA 6,042,397 G→C 12.9% C93S (TGC→TCC)  PP_5295 → hypothetical protein
MC JC 6,098,315 Δ9 bp 100% coding (822‑830/867 nt) PP_5350 ← RpiR family transcriptional regulator
RA 6,104,109 T→A 23.5% intergenic (+31/‑83) PP_5353 → / → PP_5354 hypothetical protein/hypothetical protein
RA 6,104,110 T→A 23.6% intergenic (+32/‑82) PP_5353 → / → PP_5354 hypothetical protein/hypothetical protein
RA 6,130,169 G→C 16.7% A107G (GCC→GGC)  PP_5378 ← metal‑binding protein
RA 6,165,280 T→A 23.3% D20V (GAT→GTT)  PP_5405 ← transposase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 171346–172965 176293–172967 3–4948 5 [4] [4] 5 PP_16SA–[PP_5SA] PP_16SA,PP_23SA,[PP_5SA]
* * ÷ NC_002947 176651–178395 181726–178397 3–5076 5 [4] [4] 5 PP_16SB–[PP_r01] PP_16SB,PP_23SB,[PP_r01]
* * ÷ NC_002947 1131771 1131803 33 7 [3] [3] 5 PP_0992 hypothetical protein

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 25741 =38 (1.640)4 (0.190) 4/230 NT 11.0% intergenic (+171/‑140) PP_0020/PP_0021 hypothetical protein/hypothetical protein
?NC_002947 25779 = 30 (1.410)intergenic (+209/‑102) PP_0020/PP_0021 hypothetical protein/hypothetical protein
* ? NC_002947 = 174906NA (NA)3 (0.140) 3/240 NT NA noncoding (1704/2902 nt) PP_23SA 23S ribosomal RNA
?NC_002947 = 174936 NA (NA)noncoding (1734/2902 nt) PP_23SA 23S ribosomal RNA
* ? NC_002947 = 176399NA (NA)17 (0.770)
+CGAAA		 10/240 NT 55.8% intergenic (+43/‑420) PP_5SA/PP_16SB 5S ribosomal RNA/16S ribosomal RNA
?NC_002947 = 182013 14 (0.610)intergenic (+2/+63) PP_5SB/PP_0160 5S ribosomal RNA/ferrioxamine receptor
* ? NC_002947 = 19564433 (1.430)9 (0.390) 6/248 NT 21.5% coding (1150/26049 nt) PP_0168 putative surface adhesion protein
?NC_002947 = 196261 33 (1.440)coding (1767/26049 nt) PP_0168 putative surface adhesion protein
* ? NC_002947 375999 =29 (1.250)3 (0.140) 3/232 NT 9.9% coding (43/771 nt) PP_0313 electron transfer flavoprotein subunit beta
?NC_002947 376055 = 28 (1.310)coding (99/771 nt) PP_0313 electron transfer flavoprotein subunit beta
* ? NC_002947 = 38085822 (0.950)5 (0.270) 5/204 NT 20.4% intergenic (+45/+64) gbcB/PP_0317 glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
?NC_002947 = 380892 21 (1.110)intergenic (+79/+30) gbcB/PP_0317 glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
* ? NC_002947 383563 =22 (0.950)3 (0.130) 3/246 NT 10.8% coding (38/1938 nt) PP_0320 methyl‑accepting chemotaxis transducer
?NC_002947 383593 = 28 (1.230)coding (68/1938 nt) PP_0320 methyl‑accepting chemotaxis transducer
* ? NC_002947 386636 =18 (0.780)5 (0.230) 5/240 NT 22.6% intergenic (‑98/‑228) ltaE/glyA‑I low specificity l‑threonine aldolase/serine hydroxymethyltransferase
?NC_002947 386719 = 17 (0.770)intergenic (‑181/‑145) ltaE/glyA‑I low specificity l‑threonine aldolase/serine hydroxymethyltransferase
* ? NC_002947 401375 =22 (0.950)9 (0.410) 6/238 NT 36.8% coding (958/1059 nt) PP_0334 transposase
?NC_002947 3968935 = 10 (0.450)coding (1019/1179 nt) PP_3498 transposase
* ? NC_002947 529914 =27 (1.170)6 (0.280) 6/228 NT 18.3% intergenic (+8/‑176) PP_5SC/birA 5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
?NC_002947 529950 = 29 (1.380)intergenic (+44/‑140) PP_5SC/birA 5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
* ? NC_002947 = 54381333 (1.430)3 (0.140) 3/238 NT 10.6% coding (2050/4200 nt) rpoC DNA‑directed RNA polymerase subunit beta'
?NC_002947 = 543849 19 (0.860)coding (2086/4200 nt) rpoC DNA‑directed RNA polymerase subunit beta'
* ? NC_002947 595628 =12 (0.520)3 (0.130) 3/242 NT 19.6% coding (529/1266 nt) PP_0506 ABC transporter permease
?NC_002947 595675 = 13 (0.580)coding (482/1266 nt) PP_0506 ABC transporter permease
* ? NC_002947 = 62057918 (0.780)3 (0.140) 3/238 NT 16.6% coding (114/693 nt) PP_0534 transcriptional regulator PfeR
?NC_002947 = 620643 13 (0.590)coding (50/693 nt) PP_0534 transcriptional regulator PfeR
* ? NC_002947 = 65278515 (0.650)9 (0.460) 9/210 NT 58.8% coding (1961/1962 nt) ctpL methyl‑accepting chemotaxis protein CtpL
?NC_002947 = 4808204 0 (0.000)intergenic (‑268/‑287) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
* ? NC_002947 673262 =32 (1.380)3 (0.140) 3/238 NT 9.2% coding (261/777 nt) PP_0574 LuxR family transcriptional regulator
?NC_002947 673328 = 29 (1.320)coding (195/777 nt) PP_0574 LuxR family transcriptional regulator
* ? NC_002947 = 80738826 (1.120)3 (0.130) 3/242 NT 10.5% coding (649/708 nt) PP_0694 hypothetical protein
?NC_002947 = 807416 26 (1.160)coding (621/708 nt) PP_0694 hypothetical protein
* ? NC_002947 = 83784515 (0.650)4 (0.180) 4/240 NT 21.4% coding (123/585 nt) pth peptidyl‑tRNA hydrolase
?NC_002947 = 837864 15 (0.680)coding (104/585 nt) pth peptidyl‑tRNA hydrolase
* ? NC_002947 976546 =17 (0.740)3 (0.140) 3/238 NT 14.6% coding (254/756 nt) trmJ tRNA (cytosine(32)/uridine(32)‑2'‑O)‑methyltransferase TrmJ
?NC_002947 976581 = 19 (0.860)coding (289/756 nt) trmJ tRNA (cytosine(32)/uridine(32)‑2'‑O)‑methyltransferase TrmJ
* ? NC_002947 1025270 =14 (0.610)3 (0.170) 3/196 NT 20.0% intergenic (‑121/+108) opdP/dppA‑II glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
?NC_002947 1025363 = 13 (0.720)intergenic (‑214/+15) opdP/dppA‑II glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
* ? NC_002947 1053240 =29 (1.250)5 (0.230) 3/240 NT 15.9% coding (130/1428 nt) PP_0910 hypothetical protein
?NC_002947 1053338 = 25 (1.130)coding (32/1428 nt) PP_0910 hypothetical protein
* ? NC_002947 = 107871619 (0.820)3 (0.140) 3/234 NT 11.4% coding (571/612 nt) maf septum formation protein
?NC_002947 = 1078756 29 (1.340)coding (611/612 nt) maf septum formation protein
* ? NC_002947 1147935 =40 (1.730)4 (0.180) 4/242 NT 9.9% coding (134/2589 nt) PP_1006 heme receptor
?NC_002947 1147973 = 34 (1.520)coding (96/2589 nt) PP_1006 heme receptor
* ? NC_002947 1203075 =58 (2.510)3 (0.140) 3/232 NT 5.5% coding (898/1089 nt) xcpY type II secretion pathway protein XcpY
?NC_002947 1203123 = 49 (2.280)coding (946/1089 nt) xcpY type II secretion pathway protein XcpY
* ? NC_002947 1251009 =18 (0.780)3 (0.140) 3/234 NT 16.7% coding (268/549 nt) PP_1093 electron transport complex protein
?NC_002947 1251060 = 13 (0.600)coding (217/549 nt) PP_1093 electron transport complex protein
* ? NC_002947 1263652 =25 (1.080)4 (0.180) 4/242 NT 15.3% coding (761/1659 nt) PP_1105 ATP‑dependent DNA ligase
?NC_002947 1263688 = 20 (0.890)coding (725/1659 nt) PP_1105 ATP‑dependent DNA ligase
* ? NC_002947 1298277 =NA (NA)3 (0.140) 3/240 NT NA intergenic (+130/+299) PP_1133/PP_1134 transposase/hypothetical protein
?NC_002947 1298313 = NA (NA)intergenic (+166/+263) PP_1133/PP_1134 transposase/hypothetical protein
* ? NC_002947 = 136241330 (1.300)4 (0.180) 3/234 NT 11.6% coding (797/1347 nt) phoQ sensor protein
?NC_002947 = 1362442 33 (1.530)coding (826/1347 nt) phoQ sensor protein
* ? NC_002947 1394321 =21 (0.910)3 (0.140) 3/236 NT 15.5% coding (52/1047 nt) ruvB Holliday junction ATP‑dependent DNA helicase RuvB
?NC_002947 1394357 = 13 (0.600)coding (88/1047 nt) ruvB Holliday junction ATP‑dependent DNA helicase RuvB
* ? NC_002947 = 14195848 (0.350)7 (0.410) 6/186 NT 46.7% intergenic (‑67/+70) PP_1242/PP_1244 hypothetical protein/hypothetical protein
?NC_002947 = 1419614 10 (0.580)intergenic (‑97/+40) PP_1242/PP_1244 hypothetical protein/hypothetical protein
* ? NC_002947 = 147386431 (1.340)3 (0.140) 3/234 NT 10.2% coding (364/1317 nt) algD GDP‑mannose 6‑dehydrogenase
?NC_002947 = 1473895 24 (1.110)coding (333/1317 nt) algD GDP‑mannose 6‑dehydrogenase
* ? NC_002947 = 149946516 (0.690)4 (0.210) 4/204 NT 19.5% intergenic (+35/‑131) trpS/zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
?NC_002947 = 1499502 20 (1.060)intergenic (+72/‑94) trpS/zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
* ? NC_002947 1514973 =20 (0.870)4 (0.180) 4/242 NT 18.5% coding (156/294 nt) ftsL cell division protein FtsL
?NC_002947 1515008 = 16 (0.720)coding (191/294 nt) ftsL cell division protein FtsL
* ? NC_002947 = 151574418 (0.780)4 (0.190) 4/230 NT 18.4% coding (637/1749 nt) ftsI peptidoglycan DD transpeptidase
?NC_002947 = 1515753 19 (0.890)coding (646/1749 nt) ftsI peptidoglycan DD transpeptidase
* ? NC_002947 1551725 =33 (1.430)3 (0.140) 3/234 NT 9.4% coding (1139/1455 nt) pykA pyruvate kinase II
?NC_002947 1551778 = 27 (1.250)coding (1086/1455 nt) pykA pyruvate kinase II
* ? NC_002947 1581381 =23 (1.000)3 (0.140) 4/240 NT 12.5% coding (58/3153 nt) ttgB efflux pump membrane protein TtgB
?NC_002947 1581399 = 20 (0.900)coding (40/3153 nt) ttgB efflux pump membrane protein TtgB
* ? NC_002947 1745822 =24 (1.040)5 (0.230) 5/240 NT 17.5% intergenic (‑20/+299) PP_1543/PP_1544 hypothetical protein/hypothetical protein
?NC_002947 1745847 = 24 (1.080)intergenic (‑45/+274) PP_1543/PP_1544 hypothetical protein/hypothetical protein
* ? NC_002947 = 176989218 (0.780)4 (0.180) 4/238 NT 18.1% coding (598/3000 nt) PP_1579 hypothetical protein
?NC_002947 = 1769914 19 (0.860)coding (620/3000 nt) PP_1579 hypothetical protein
* ? NC_002947 = 177093019 (0.820)5 (0.220) 5/248 NT 23.3% coding (1636/3000 nt) PP_1579 hypothetical protein
?NC_002947 = 1770977 14 (0.610)coding (1683/3000 nt) PP_1579 hypothetical protein
* ? NC_002947 1794713 =17 (0.740)4 (0.180) 4/236 NT 20.5% coding (1889/2361 nt) bamA‑I outer membrane protein assembly factor
?NC_002947 1794737 = 15 (0.690)coding (1913/2361 nt) bamA‑I outer membrane protein assembly factor
* ? NC_002947 1809090 =14 (0.610)3 (0.140) 3/234 NT 17.1% coding (99/1290 nt) eno enolase
?NC_002947 1809139 = 16 (0.740)coding (148/1290 nt) eno enolase
* ? NC_002947 1813931 =26 (1.120)4 (0.180) 4/242 NT 14.5% coding (244/855 nt) frmC S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase
?NC_002947 1813966 = 22 (0.980)coding (279/855 nt) frmC S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase
* ? NC_002947 1837562 =30 (1.300)5 (0.220) 5/242 NT 14.7% coding (139/672 nt) PP_1642 hypothetical protein
?NC_002947 1837587 = 29 (1.300)coding (164/672 nt) PP_1642 hypothetical protein
* ? NC_002947 = 189681120 (0.870)4 (0.190) 4/232 NT 17.2% coding (305/318 nt) sugE transporter
?NC_002947 = 1896838 20 (0.930)coding (278/318 nt) sugE transporter
* ? NC_002947 = 190674921 (0.910)4 (0.220) 4/198 NT 15.2% intergenic (+47/+81) nirD/PP_1707 nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
?NC_002947 = 1906791 28 (1.530)intergenic (+89/+39) nirD/PP_1707 nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
* ? NC_002947 = 196808614 (0.610)4 (0.190) 4/224 NT 22.5% intergenic (‑54/+104) yciK/gph putative oxidoreductase/phosphoglycolate phosphatase
?NC_002947 = 1968145 15 (0.720)intergenic (‑113/+45) yciK/gph putative oxidoreductase/phosphoglycolate phosphatase
* ? NC_002947 1978556 =31 (1.340)3 (0.140) 3/238 NT 8.8% coding (2177/2241 nt) PP_1770 3‑phosphoshikimate 1‑carboxyvinyltransferase
?NC_002947 1978592 = 33 (1.500)coding (2213/2241 nt) PP_1770 3‑phosphoshikimate 1‑carboxyvinyltransferase
* ? NC_002947 2032853 =NA (NA)3 (0.140) 3/238 NT 51.2% coding (291/1665 nt) pgi‑I glucose 6‑phosphate isomerase
?NC_002947 2032878 = 3 (0.130)coding (316/1665 nt) pgi‑I glucose 6‑phosphate isomerase
* ? NC_002947 = 204916324 (1.040)6 (0.270) 6/242 NT 21.7% coding (152/372 nt) PP_1822 hypothetical protein
?NC_002947 = 2049187 20 (0.890)coding (128/372 nt) PP_1822 hypothetical protein
* ? NC_002947 = 205380422 (0.950)3 (0.140) 3/240 NT 12.0% coding (865/960 nt) PP_1829 alpha/beta family hydrolase
?NC_002947 = 2053828 23 (1.040)coding (841/960 nt) PP_1829 alpha/beta family hydrolase
* ? NC_002947 = 2087064NA (NA)8 (0.360) 7/240 NT NA coding (1136/1302 nt) PP_1865 transposase
?NC_002947 = 2087083 NA (NA)coding (1155/1302 nt) PP_1865 transposase
* ? NC_002947 = 208776213 (0.560)6 (0.270) 6/238 NT 27.0% intergenic (+532/+386) PP_1865/aroH transposase/3‑deoxy‑7‑phosphoheptulonate synthase
?NC_002947 = 2256278 20 (0.910)intergenic (+295/‑409) asd/PP_1990 aspartate‑semialdehyde dehydrogenase/transposase
* ? NC_002947 2143400 =23 (1.000)4 (0.180) 4/238 NT 16.4% coding (137/435 nt) PP_1899 ExbD/TolR family protein
?NC_002947 2143445 = 19 (0.860)coding (182/435 nt) PP_1899 ExbD/TolR family protein
* ? NC_002947 2228963 =15 (0.650)3 (0.130) 3/242 NT 13.5% coding (56/783 nt) ycfH tRNA D‑aminoacylase
?NC_002947 2228999 = 24 (1.070)coding (92/783 nt) ycfH tRNA D‑aminoacylase
* ? NC_002947 = 223898017 (0.740)4 (0.180) 4/238 NT 17.7% coding (800/1164 nt) PP_1976 HlyD family secretion protein
?NC_002947 = 2239010 21 (0.950)coding (770/1164 nt) PP_1976 HlyD family secretion protein
* ? NC_002947 2296850 =39 (1.690)4 (0.180) 4/242 NT 9.2% coding (3315/3645 nt) sbcC exonuclease subunit SbcC
?NC_002947 2296904 = 41 (1.830)coding (3261/3645 nt) sbcC exonuclease subunit SbcC
* ? NC_002947 2300506 =14 (0.610)4 (0.180) 4/236 NT 24.8% coding (894/1239 nt) sbcD exonuclease subunit SbcD
?NC_002947 2300548 = 11 (0.500)coding (852/1239 nt) sbcD exonuclease subunit SbcD
* ? NC_002947 2302573 =31 (1.340)3 (0.140) 3/234 NT 12.2% coding (242/267 nt) PP_2026 hypothetical protein
?NC_002947 2302663 = 14 (0.650)coding (152/267 nt) PP_2026 hypothetical protein
* ? NC_002947 = 235960128 (1.210)4 (0.180) 3/238 NT 12.8% coding (516/924 nt) PP_2074 LysR family transcriptional regulator
?NC_002947 = 2359606 28 (1.270)coding (521/924 nt) PP_2074 LysR family transcriptional regulator
* ? NC_002947 = 243413237 (1.600)7 (0.340) 7/224 NT 17.3% intergenic (+32/+76) uup/PP_2132 ABC transporter ATP‑binding protein/universal stress protein
?NC_002947 = 2434180 34 (1.640)intergenic (+80/+28) uup/PP_2132 ABC transporter ATP‑binding protein/universal stress protein
* ? NC_002947 2436654 =31 (1.340)3 (0.140) 3/230 NT 9.6% intergenic (+189/‑470) PP_2134/fadB transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
?NC_002947 2436709 = 28 (1.320)intergenic (+244/‑415) PP_2134/fadB transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
* ? NC_002947 2446426 =19 (0.820)3 (0.140) 3/240 NT 13.9% coding (657/708 nt) PP_2144 TetR family transcriptional regulator
?NC_002947 2446446 = 19 (0.860)coding (677/708 nt) PP_2144 TetR family transcriptional regulator
* ? NC_002947 = 249852226 (1.120)5 (0.230) 4/238 NT 17.6% coding (380/2454 nt) PP_2193 ferric siderophore receptor
?NC_002947 = 2498539 22 (1.000)coding (397/2454 nt) PP_2193 ferric siderophore receptor
* ? NC_002947 2503015 =25 (1.080)3 (0.140) 3/238 NT 10.8% coding (267/936 nt) speB agmatinase
?NC_002947 2503057 = 26 (1.180)coding (309/936 nt) speB agmatinase
* ? NC_002947 2504290 =25 (1.080)3 (0.140) 3/234 NT 11.2% coding (34/1146 nt) yliI aldose sugar dehydrogenase
?NC_002947 2504328 = 24 (1.110)coding (72/1146 nt) yliI aldose sugar dehydrogenase
* ? NC_002947 = 259564920 (0.870)3 (0.140) 3/238 NT 13.3% coding (325/1923 nt) PP_2273 DNA polymerase I
?NC_002947 = 2595692 20 (0.910)coding (368/1923 nt) PP_2273 DNA polymerase I
* ? NC_002947 2668066 =20 (0.870)5 (0.280) 5/190 NT 27.6% intergenic (+41/‑126) prpF/prpD aconitate isomerase/2‑methylcitrate dehydratase
?NC_002947 2668155 = 11 (0.630)intergenic (+130/‑37) prpF/prpD aconitate isomerase/2‑methylcitrate dehydratase
* ? NC_002947 = 279289710 (0.430)4 (0.180) 4/238 NT 29.1% coding (184/240 nt) PP_5524 hypothetical protein
?NC_002947 = 2792919 10 (0.450)coding (206/240 nt) PP_5524 hypothetical protein
* ? NC_002947 = 285783220 (0.870)4 (0.190) 4/230 NT 18.4% intergenic (‑1058/+170) PP_2509/PP_mr37 hypothetical protein/C4 ncRNA
?NC_002947 = 2857840 17 (0.800)intergenic (‑1066/+162) PP_2509/PP_mr37 hypothetical protein/C4 ncRNA
* ? NC_002947 = 287292919 (0.820)3 (0.140) 3/236 NT 13.1% coding (189/1164 nt) PP_2525 hypothetical protein
?NC_002947 = 2872955 22 (1.010)coding (163/1164 nt) PP_2525 hypothetical protein
* ? NC_002947 2884298 =30 (1.300)4 (0.180) 4/244 NT 13.3% coding (815/927 nt) PP_2539 LysR family transcriptional regulator
?NC_002947 2884357 = 23 (1.020)coding (874/927 nt) PP_2539 LysR family transcriptional regulator
* ? NC_002947 = 290720928 (1.210)3 (0.140) 3/238 NT 9.6% coding (217/1359 nt) PP_2558 outer membrane efflux protein
?NC_002947 = 2907231 30 (1.360)coding (195/1359 nt) PP_2558 outer membrane efflux protein
* ? NC_002947 2950146 =29 (1.250)4 (0.180) 3/236 NT 14.7% coding (1119/1374 nt) oguA 8‑oxoguanine deaminase
?NC_002947 2950187 = 19 (0.870)coding (1078/1374 nt) oguA 8‑oxoguanine deaminase
* ? NC_002947 3052758 =23 (1.000)4 (0.180) 4/234 NT 14.4% coding (1415/1899 nt) PP_2664 two‑component system sensor histidine kinase/response regulator
?NC_002947 3052825 = 26 (1.200)coding (1482/1899 nt) PP_2664 two‑component system sensor histidine kinase/response regulator
* ? NC_002947 = 306886427 (1.170)4 (0.180) 4/234 NT 12.1% intergenic (+72/‑91) qedH‑II/aldB‑II quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase
?NC_002947 = 3068889 33 (1.530)intergenic (+97/‑66) qedH‑II/aldB‑II quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase
* ? NC_002947 = 307049132 (1.380)4 (0.180) 4/246 NT 12.8% intergenic (+16/‑338) aldB‑II/pqqD‑II aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
?NC_002947 = 3070569 23 (1.010)intergenic (+94/‑260) aldB‑II/pqqD‑II aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
* ? NC_002947 = 315237236 (1.560)3 (0.140) 3/232 NT 8.1% coding (484/882 nt) PP_2768 branched‑chain amino acid ABC transporter permease
?NC_002947 = 3152388 35 (1.630)coding (500/882 nt) PP_2768 branched‑chain amino acid ABC transporter permease
* ? NC_002947 = 326613717 (0.740)4 (0.180) 4/244 NT 20.2% intergenic (+11/+48) PP_2863/PP_2864 membrane protein/hypothetical protein
?NC_002947 = 3266175 15 (0.660)intergenic (+49/+10) PP_2863/PP_2864 membrane protein/hypothetical protein
* ? NC_002947 3368837 =15 (0.650)5 (0.230) 5/240 NT 24.8% coding (2100/3015 nt) PP_2964 transposase
?NC_002947 3368872 = 16 (0.720)coding (2135/3015 nt) PP_2964 transposase
* ? NC_002947 3393681 =30 (1.300)5 (0.230) 7/232 NT 16.7% coding (769/900 nt) PP_2997 protein CnmA
?NC_002947 3393710 = 22 (1.030)coding (740/900 nt) PP_2997 protein CnmA
* ? NC_002947 = 346075327 (1.170)3 (0.140) 3/240 NT 10.2% coding (665/1017 nt) PP_3076 ABC transporter permease
?NC_002947 = 3460786 27 (1.220)coding (632/1017 nt) PP_3076 ABC transporter permease
* ? NC_002947 3464300 =23 (1.000)6 (0.320) 5/202 NT 24.2% coding (101/1929 nt) PP_3078 ABC transporter substrate‑binding protein
?NC_002947 3464387 = 19 (1.020)coding (14/1929 nt) PP_3078 ABC transporter substrate‑binding protein
* ? NC_002947 = 349462627 (1.170)3 (0.140) 3/238 NT 11.2% coding (102/483 nt) PP_3098 hypothetical protein
?NC_002947 = 3494655 22 (1.000)coding (73/483 nt) PP_3098 hypothetical protein
* ? NC_002947 = 354012530 (1.300)4 (0.180) 4/240 NT 11.8% coding (769/1539 nt) PP_3127 exopolysaccharide transport protein
?NC_002947 = 3540140 31 (1.400)coding (784/1539 nt) PP_3127 exopolysaccharide transport protein
* ? NC_002947 = 354192237 (1.600)5 (0.220) 5/242 NT 12.5% coding (844/966 nt) galE UDP‑glucose 4‑epimerase
?NC_002947 = 3541938 34 (1.520)coding (828/966 nt) galE UDP‑glucose 4‑epimerase
* ? NC_002947 3562695 =25 (1.080)4 (0.180) 4/236 NT 16.1% coding (1172/1296 nt) PP_3146 oxidoreductase
?NC_002947 3562720 = 18 (0.820)coding (1147/1296 nt) PP_3146 oxidoreductase
* ? NC_002947 3584572 =21 (0.910)3 (0.140) 3/240 NT 14.6% coding (687/1011 nt) benC benzoate 1,2‑dioxygenase electron transfer component
?NC_002947 3584616 = 15 (0.680)coding (731/1011 nt) benC benzoate 1,2‑dioxygenase electron transfer component
* ? NC_002947 3644951 =16 (0.690)5 (0.230) 5/240 NT 24.2% intergenic (‑3/+63) PP_3211/PP_3212 ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
?NC_002947 3644975 = 16 (0.720)intergenic (‑27/+39) PP_3211/PP_3212 ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
* ? NC_002947 3679588 =28 (1.210)3 (0.140) 3/240 NT 12.0% coding (305/714 nt) mgtC MgtC family magnesium transporter
?NC_002947 3679620 = 17 (0.770)coding (273/714 nt) mgtC MgtC family magnesium transporter
* ? NC_002947 = 375916318 (0.780)3 (0.140) 3/240 NT 14.9% coding (385/612 nt) PP_3323 CobW/P47K family protein
?NC_002947 = 3759191 17 (0.770)coding (413/612 nt) PP_3323 CobW/P47K family protein
* ? NC_002947 3775020 =25 (1.080)4 (0.180) 3/236 NT 14.9% intergenic (‑4/+47) PP_3335/PP_3336 hypothetical protein/hypothetical protein
?NC_002947 3775055 = 22 (1.010)intergenic (‑39/+12) PP_3335/PP_3336 hypothetical protein/hypothetical protein
* ? NC_002947 3778389 =28 (1.210)3 (0.130) 3/242 NT 9.7% coding (1400/2052 nt) PP_3340 TonB‑dependent receptor
?NC_002947 3778418 = 29 (1.300)coding (1429/2052 nt) PP_3340 TonB‑dependent receptor
* ? NC_002947 = 379784034 (1.470)4 (0.180) 4/238 NT 11.4% coding (197/1449 nt) vdh vanillin dehydrogenase
?NC_002947 = 3797929 30 (1.360)coding (108/1449 nt) vdh vanillin dehydrogenase
* ? NC_002947 = 391514336 (1.560)4 (0.180) 4/240 NT 10.1% coding (68/1176 nt) PP_3455 multidrug RND transporter membrane fusion protein
?NC_002947 = 3915164 37 (1.670)coding (89/1176 nt) PP_3455 multidrug RND transporter membrane fusion protein
* ? NC_002947 = 396303212 (0.520)4 (0.190) 3/228 NT 19.1% intergenic (+34/+83) PP_3492/PP_3493 acyl‑CoA dehydrogenase/LysR family transcriptional regulator
?NC_002947 = 3963072 23 (1.090)intergenic (+74/+43) PP_3492/PP_3493 acyl‑CoA dehydrogenase/LysR family transcriptional regulator
* ? NC_002947 3963855 =19 (0.820)3 (0.140) 3/240 NT 12.7% coding (193/933 nt) PP_3493 LysR family transcriptional regulator
?NC_002947 3963900 = 23 (1.040)coding (148/933 nt) PP_3493 LysR family transcriptional regulator
* ? NC_002947 4012762 =29 (1.250)6 (0.270) 6/238 NT 19.8% coding (554/900 nt) mvaB hydroxymethylglutaryl‑CoA lyase
?NC_002947 4012782 = 21 (0.950)coding (574/900 nt) mvaB hydroxymethylglutaryl‑CoA lyase
* ? NC_002947 4098110 =39 (1.690)3 (0.140) 3/232 NT 8.2% coding (624/975 nt) qor‑II quinone oxidoreductase
?NC_002947 4098152 = 31 (1.450)coding (582/975 nt) qor‑II quinone oxidoreductase
* ? NC_002947 4267344 =28 (1.210)5 (0.220) 5/242 NT 18.1% coding (558/1254 nt) galP‑IV porin‑like protein
?NC_002947 4267424 = 18 (0.800)coding (478/1254 nt) galP‑IV porin‑like protein
* ? NC_002947 4269857 =18 (0.780)2 (0.090) 4/242 NT 9.9% intergenic (‑513/‑48) PP_3740/mrdA‑I MFS transporter/transpeptidase
?NC_002947 4269876 = 19 (0.850)intergenic (‑532/‑29) PP_3740/mrdA‑I MFS transporter/transpeptidase
* ? NC_002947 4276970 =28 (1.210)6 (0.270) 6/244 NT 18.4% coding (322/1236 nt) glcF glycolate oxidase iron‑sulfur subunit
?NC_002947 4277012 = 26 (1.150)coding (364/1236 nt) glcF glycolate oxidase iron‑sulfur subunit
* ? NC_002947 4303031 =22 (0.950)3 (0.140) 3/238 NT 12.5% coding (178/207 nt) PP_5627 hypothetical protein
?NC_002947 4303057 = 21 (0.950)coding (204/207 nt) PP_5627 hypothetical protein
* ? NC_002947 = 430303622 (0.950)3 (0.140) 3/238 NT 12.5% coding (183/207 nt) PP_5627 hypothetical protein
?NC_002947 = 4303050 21 (0.950)coding (197/207 nt) PP_5627 hypothetical protein
* ? NC_002947 4349069 =29 (1.250)7 (0.310) 7/242 NT 24.1% intergenic (‑390/+84) PP_3820/galU group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
?NC_002947 4393427 = 16 (0.720)intergenic (‑369/+101) PP_3868/PP_3869 group II intron‑encoding maturase/sheath protein
* ? NC_002947 = 442278426 (1.120)4 (0.180) 4/240 NT 14.0% coding (208/300 nt) PP_5645 hypothetical protein
?NC_002947 = 4422807 24 (1.080)coding (185/300 nt) PP_5645 hypothetical protein
* ? NC_002947 = 444963132 (1.380)3 (0.130) 3/242 NT 10.7% intergenic (+102/‑340) nicR/nicA HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
?NC_002947 = 4449683 19 (0.850)intergenic (+154/‑288) nicR/nicA HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
* ? NC_002947 4450402 =23 (1.000)3 (0.140) 5/240 NT 11.1% coding (432/474 nt) nicA nicotinate dehydrogenase subunit A
?NC_002947 4450420 = 26 (1.170)coding (450/474 nt) nicA nicotinate dehydrogenase subunit A
* ? NC_002947 4561348 =30 (1.300)4 (0.180) 4/234 NT 13.8% coding (245/1404 nt) PP_4048 hypothetical protein
?NC_002947 4561414 = 22 (1.020)coding (179/1404 nt) PP_4048 hypothetical protein
* ? NC_002947 4586063 =7 (0.300)8 (0.500) 8/174 NT 61.8% intergenic (+102/+115) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
?NC_002947 4586167 = 5 (0.310)intergenic (+206/+11) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
* ? NC_002947 = 45861007 (0.300)5 (0.310) 5/174 NT 50.3% intergenic (+139/+78) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
?NC_002947 = 4586128 5 (0.310)intergenic (+167/+50) PP_4061/PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
* ? NC_002947 4593882 =38 (1.640)3 (0.160) 3/202 NT 10.4% intergenic (+142/+157) mccA/PP_4068 methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
?NC_002947 4593975 = 21 (1.120)intergenic (+235/+64) mccA/PP_4068 methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
* ? NC_002947 = 464302016 (0.690)4 (0.190) 3/232 NT 20.1% intergenic (+20/‑160) PP_4107/PP_4108 LysR family transcriptional regulator/4‑aminobutyrate aminotransferase
?NC_002947 = 4643043 17 (0.790)intergenic (+43/‑137) PP_4107/PP_4108 LysR family transcriptional regulator/4‑aminobutyrate aminotransferase
* ? NC_002947 4667658 =38 (1.640)4 (0.180) 4/242 NT 10.7% coding (1378/1854 nt) nuoL NADH‑quinone oxidoreductase subunit L
?NC_002947 4667708 = 30 (1.340)coding (1428/1854 nt) nuoL NADH‑quinone oxidoreductase subunit L
* ? NC_002947 = 470080326 (1.120)6 (0.290) 5/222 NT 17.1% intergenic (‑70/+80) kdpD/kdpC sensor protein/potassium‑transporting ATPase subunit C
?NC_002947 = 4700847 35 (1.710)intergenic (‑114/+36) kdpD/kdpC sensor protein/potassium‑transporting ATPase subunit C
* ? NC_002947 = 475518025 (1.080)4 (0.190) 4/232 NT 14.5% coding (376/1965 nt) pvdT pyoverdine ABC transporter ATP‑binding protein/permease
?NC_002947 = 4755205 24 (1.120)coding (401/1965 nt) pvdT pyoverdine ABC transporter ATP‑binding protein/permease
* ? NC_002947 4772452 =27 (1.170)3 (0.140) 3/236 NT 12.4% coding (6860/10413 nt) pvdD non‑ribosomal peptide synthetase
?NC_002947 4772493 = 17 (0.780)coding (6819/10413 nt) pvdD non‑ribosomal peptide synthetase
* ? NC_002947 = 477313232 (1.380)4 (0.190) 4/232 NT 13.2% coding (6180/10413 nt) pvdD non‑ribosomal peptide synthetase
?NC_002947 = 4773195 23 (1.070)coding (6117/10413 nt) pvdD non‑ribosomal peptide synthetase
* ? NC_002947 4808219 =0 (0.000)13 (0.780) 10/180 NT 74.3% intergenic (‑283/‑272) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 = 5988991 9 (0.540)intergenic (+229/‑317) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? NC_002947 = 487073532 (1.380)5 (0.270) 4/200 NT 16.5% intergenic (+40/‑80) xdhB/xdhC xanthine dehydrogenase subunit XdhB/xanthine dehydrogenase accessory factor
?NC_002947 = 4870755 25 (1.350)intergenic (+60/‑60) xdhB/xdhC xanthine dehydrogenase subunit XdhB/xanthine dehydrogenase accessory factor
* ? NC_002947 4893598 =28 (1.210)3 (0.170) 3/196 NT 12.3% intergenic (+28/‑180) pyk/PP_4302 pyruvate kinase/urea transporter
?NC_002947 4893677 = 21 (1.160)intergenic (+107/‑101) pyk/PP_4302 pyruvate kinase/urea transporter
* ? NC_002947 = 489362431 (1.340)5 (0.280) 4/196 NT 18.1% intergenic (+54/‑154) pyk/PP_4302 pyruvate kinase/urea transporter
?NC_002947 = 4893649 21 (1.160)intergenic (+79/‑129) pyk/PP_4302 pyruvate kinase/urea transporter
* ? NC_002947 = 495761724 (1.040)6 (0.290) 6/220 NT 19.0% intergenic (‑55/+108) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein
?NC_002947 = 4957677 30 (1.470)intergenic (‑115/+48) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein
* ? NC_002947 4978953 =38 (1.640)3 (0.130) 3/246 NT 8.6% coding (514/786 nt) flgG flagellar basal‑body rod protein FlgG
?NC_002947 4978998 = 26 (1.140)coding (469/786 nt) flgG flagellar basal‑body rod protein FlgG
* ? NC_002947 = 499300229 (1.250)3 (0.140) 3/236 NT 9.8% coding (911/1233 nt) bkdAA branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
?NC_002947 = 4993024 28 (1.280)coding (933/1233 nt) bkdAA branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
* ? NC_002947 5076538 =16 (0.690)3 (0.130) 3/244 NT 16.4% coding (51/600 nt) phnN ribose 1,5‑bisphosphate phosphokinase
?NC_002947 5076570 = 15 (0.660)coding (19/600 nt) phnN ribose 1,5‑bisphosphate phosphokinase
* ? NC_002947 5080268 =15 (0.650)3 (0.140) 3/234 NT 21.4% intergenic (‑85/+83) csrA/lysC carbon storage regulator/aspartokinase
?NC_002947 5080305 = 8 (0.370)intergenic (‑122/+46) csrA/lysC carbon storage regulator/aspartokinase
* ? NC_002947 5093159 =31 (1.340)4 (0.180) 4/236 NT 11.9% coding (511/981 nt) PP_4482 AraC family transcriptional regulator
?NC_002947 5093232 = 30 (1.370)coding (438/981 nt) PP_4482 AraC family transcriptional regulator
* ? NC_002947 5093434 =29 (1.250)4 (0.180) 4/238 NT 14.9% coding (236/981 nt) PP_4482 AraC family transcriptional regulator
?NC_002947 5093542 = 18 (0.820)coding (128/981 nt) PP_4482 AraC family transcriptional regulator
* ? NC_002947 = 516264319 (0.820)5 (0.270) 5/198 NT 24.4% intergenic (+118/+83) PP_4544/PP_4545 hypothetical protein/beta‑ketodecanoyl‑ACP synthase
?NC_002947 = 5162675 16 (0.870)intergenic (+150/+51) PP_4544/PP_4545 hypothetical protein/beta‑ketodecanoyl‑ACP synthase
* ? NC_002947 = 516489815 (0.650)4 (0.180) 4/234 NT 16.7% coding (3030/3906 nt) hrpA ATP‑dependent helicase HrpA
?NC_002947 = 5164971 26 (1.200)coding (2957/3906 nt) hrpA ATP‑dependent helicase HrpA
* ? NC_002947 5196431 =34 (1.470)4 (0.190) 4/230 NT 12.1% coding (132/690 nt) ybgJ allophanate hydrolase subunit 1
?NC_002947 5196476 = 27 (1.270)coding (87/690 nt) ybgJ allophanate hydrolase subunit 1
* ? NC_002947 = 522868415 (0.650)4 (0.180) 4/244 NT 21.8% coding (423/2391 nt) PP_4606 ferric siderophore receptor
?NC_002947 = 5228712 14 (0.620)coding (395/2391 nt) PP_4606 ferric siderophore receptor
* ? NC_002947 5245198 =20 (0.870)4 (0.180) 4/234 NT 18.7% coding (557/834 nt) hmgR Hmg transcriptional repressor
?NC_002947 5245249 = 16 (0.740)coding (608/834 nt) hmgR Hmg transcriptional repressor
* ? NC_002947 = 525739927 (1.170)3 (0.140) 3/234 NT 11.7% coding (451/909 nt) PP_4634 alpha/beta family hydrolase
?NC_002947 = 5257429 20 (0.920)coding (421/909 nt) PP_4634 alpha/beta family hydrolase
* ? NC_002947 5288442 =21 (0.910)3 (0.170) 3/190 NT 16.7% intergenic (‑75/+109) PP_4660/mdaB LysR family transcriptional regulator/drug activity modulator B
?NC_002947 5288536 = 14 (0.800)intergenic (‑169/+15) PP_4660/mdaB LysR family transcriptional regulator/drug activity modulator B
* ? NC_002947 5306259 =18 (0.780)3 (0.130) 3/242 NT 14.1% coding (1041/3483 nt) recC multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
?NC_002947 5306292 = 19 (0.850)coding (1008/3483 nt) recC multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
* ? NC_002947 = 532809721 (0.910)4 (0.180) 3/236 NT 18.3% coding (290/1038 nt) PP_4688 heme/hemin ABC transporter permease
?NC_002947 = 5328132 16 (0.730)coding (255/1038 nt) PP_4688 heme/hemin ABC transporter permease
* ? NC_002947 5345732 =30 (1.300)4 (0.190) 4/232 NT 12.0% coding (1082/1935 nt) acsA‑II acetyl‑CoA synthetase
?NC_002947 5345771 = 31 (1.450)coding (1121/1935 nt) acsA‑II acetyl‑CoA synthetase
* ? NC_002947 = 537344030 (1.300)4 (0.190) 4/226 NT 13.3% intergenic (‑65/+104) PP_mr67/dapB P32 ncRNA/4‑hydroxy‑tetrahydrodipicolinate reductase
?NC_002947 = 5373519 25 (1.200)intergenic (‑144/+25) PP_mr67/dapB P32 ncRNA/4‑hydroxy‑tetrahydrodipicolinate reductase
* ? NC_002947 5386494 =24 (1.040)4 (0.180) 4/238 NT 15.7% intergenic (+31/‑45) lldD/dld2 L‑lactate dehydrogenase/D‑lactate dehydrogenase
?NC_002947 5386527 = 20 (0.910)intergenic (+64/‑12) lldD/dld2 L‑lactate dehydrogenase/D‑lactate dehydrogenase
* ? NC_002947 = 548044426 (1.120)3 (0.140) 3/236 NT 10.1% coding (920/993 nt) prmA ribosomal protein L11 methyltransferase
?NC_002947 = 5480514 29 (1.330)coding (990/993 nt) prmA ribosomal protein L11 methyltransferase
* ? NC_002947 5513290 =26 (1.120)3 (0.160) 3/198 NT 16.0% intergenic (+20/‑134) urtD/urtE ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
?NC_002947 5513398 = 11 (0.600)intergenic (+128/‑26) urtD/urtE ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
* ? NC_002947 = 55427909 (0.390)4 (0.180) 4/234 NT 32.8% intergenic (‑44/+70) dnaB/rplI replicative DNA helicase/50S ribosomal protein L9
?NC_002947 = 5542806 8 (0.370)intergenic (‑60/+54) dnaB/rplI replicative DNA helicase/50S ribosomal protein L9
* ? NC_002947 5594143 =20 (0.870)5 (0.280) 5/194 NT 32.8% intergenic (‑39/+106) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
?NC_002947 5594236 = 5 (0.280)intergenic (‑132/+13) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
* ? NC_002947 5647180 =31 (1.340)3 (0.140) 3/238 NT 8.8% coding (459/738 nt) PP_4955 hypothetical protein
?NC_002947 5647224 = 33 (1.500)coding (415/738 nt) PP_4955 hypothetical protein
* ? NC_002947 = 566947720 (0.870)3 (0.150) 3/222 NT 12.8% intergenic (+27/‑98) ahcY/metF adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
?NC_002947 = 5669498 23 (1.120)intergenic (+48/‑77) ahcY/metF adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
* ? NC_002947 = 571691814 (0.610)4 (0.180) 4/240 NT 19.3% coding (370/708 nt) PP_5019 16S rRNA (uracil(1498)‑N(3))‑methyltransferase
?NC_002947 = 5716973 20 (0.900)coding (425/708 nt) PP_5019 16S rRNA (uracil(1498)‑N(3))‑methyltransferase
* ? NC_002947 = 572501522 (0.950)4 (0.180) 4/242 NT 15.0% coding (2007/2574 nt) opgH glucans biosynthesis glucosyltransferase H
?NC_002947 = 5725039 24 (1.070)coding (1983/2574 nt) opgH glucans biosynthesis glucosyltransferase H
* ? NC_002947 5735740 =28 (1.210)6 (0.270) 6/240 NT 20.0% intergenic (‑21/+88) hutH/hutU histidine ammonia‑lyase/urocanate hydratase
?NC_002947 5735777 = 21 (0.950)intergenic (‑58/+51) hutH/hutU histidine ammonia‑lyase/urocanate hydratase
* ? NC_002947 = 575479429 (1.250)4 (0.180) 4/242 NT 11.9% coding (934/1086 nt) glnL two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
?NC_002947 = 5754830 31 (1.390)coding (970/1086 nt) glnL two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
* ? NC_002947 = 580371633 (1.430)4 (0.180) 4/234 NT 11.6% coding (138/1017 nt) PP_5081 type IV pili biogenesis protein
?NC_002947 = 5803732 30 (1.390)coding (122/1017 nt) PP_5081 type IV pili biogenesis protein
* ? NC_002947 = 587706324 (1.040)3 (0.160) 3/202 NT 11.0% intergenic (+29/+76) rpiA/PP_5151 ribose‑5‑phosphate isomerase A/hypothetical protein
?NC_002947 = 5877097 29 (1.550)intergenic (+63/+42) rpiA/PP_5151 ribose‑5‑phosphate isomerase A/hypothetical protein
* ? NC_002947 5897799 =29 (1.250)8 (0.440) 5/196 NT 32.2% intergenic (‑143/+91) PP_5172/PP_5173 hypothetical protein/RND family transporter
?NC_002947 5897875 = 11 (0.610)intergenic (‑219/+15) PP_5172/PP_5173 hypothetical protein/RND family transporter
* ? NC_002947 = 590384230 (1.300)8 (0.400) 7/218 NT 21.3% intergenic (+42/+65) PP_5176/spuH hypothetical protein/spermidine/putrescine ABC transporter permease
?NC_002947 = 5903870 33 (1.640)intergenic (+70/+37) PP_5176/spuH hypothetical protein/spermidine/putrescine ABC transporter permease
* ? NC_002947 = 591424017 (0.740)11 (0.610) 10/194 NT 43.0% intergenic (+76/+77) spuI/argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
?NC_002947 = 5914280 16 (0.890)intergenic (+116/+37) spuI/argA glutamylpolyamine synthetase/amino acid N‑acetyltransferase
* ? NC_002947 = 598795832 (1.380)3 (0.140) 3/236 NT 8.4% coding (984/1788 nt) kefB‑III glutathione‑regulated potassium/H+ antiporter
?NC_002947 = 5987978 35 (1.600)coding (1004/1788 nt) kefB‑III glutathione‑regulated potassium/H+ antiporter
* ? NC_002947 = 603284022 (0.950)4 (0.240) 4/184 NT 19.4% intergenic (+48/+88) dppA‑IV/PP_5284 dipeptide transport protein/hypothetical protein
?NC_002947 = 6032856 17 (1.000)intergenic (+64/+72) dppA‑IV/PP_5284 dipeptide transport protein/hypothetical protein
* ? NC_002947 = 607790031 (1.340)3 (0.160) 3/202 NT 8.8% intergenic (‑146/+92) PP_5329/PP_5330 phosphate ABC transporter substrate‑binding protein/MFS transporter
?NC_002947 = 6077952 37 (1.980)intergenic (‑198/+40) PP_5329/PP_5330 phosphate ABC transporter substrate‑binding protein/MFS transporter