mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,843,140 | G→A | Q566* (CAG→TAG) | gacS ← | sensor protein GacS |
| RA | 1,852,005 | G→A | R350H (CGT→CAT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 5,610,048 | C→A | S173I (AGC→ATC) | PP_4929 ← | LysR family transcriptional regulator |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 4808205 | 4808252 | 48 | 40 [1] | [17] 19 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 176362 | NA (NA) | 37 (0.640) | 22/266 | 2.2 | NA | intergenic (+6/‑457) | PP_5SA/PP_16SB | 5S ribosomal RNA/16S ribosomal RNA |
| ? | NC_002947 | = 176400 | NA (NA) | intergenic (+44/‑419) | PP_5SA/PP_16SB | 5S ribosomal RNA/16S ribosomal RNA | |||||
| * | ? | NC_002947 | = 181541 | NA (NA) | 38 (0.680) | 17/258 | 2.9 | NA | intergenic (+7/‑126) | PP_23SB/PP_r01 | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_002947 | = 529685 | NA (NA) | intergenic (+18/‑102) | PP_23SC/PP_5SC | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_002947 | = 652785 | 45 (0.780) | 30 (0.610) | 21/226 | 1.7 | 61.1% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | = 1419584 | 55 (0.950) | 15 (0.340) | 13/202 | 2.7 | 24.1% | intergenic (‑67/+70) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419614 | 53 (1.210) | intergenic (‑97/+40) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | 2553673 = | NA (NA) | 29 (0.530) | 16/250 | 2.9 | 75.5% | intergenic (+12/‑120) | PP_23SF/PP_5SF | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_002947 | = 5307721 | 10 (0.170) | intergenic (‑117/+15) | PP_5SG/PP_23SG | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_002947 | 4647603 = | 53 (0.920) | 11 (0.270) | 11/188 | 2.9 | 27.1% | intergenic (+10/+121) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | 4647711 = | 22 (0.540) | intergenic (+118/+13) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
| * | ? | NC_002947 | = 5477178 | 38 (0.660) | 12 (0.300) | 11/184 | 2.9 | 26.6% | intergenic (+43/+69) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | = 5477195 | 40 (1.000) | intergenic (+60/+52) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | = 5643311 | 69 (1.190) | 18 (0.350) | 16/240 | 2.8 | 20.9% | intergenic (+45/‑78) | dbpA/yhiN | 23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase |
| ? | NC_002947 | = 5643327 | 74 (1.420) | intergenic (+61/‑62) | dbpA/yhiN | 23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase | |||||