breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 1,843,140 G→A Q566* (CAG→TAG)  gacS ← sensor protein GacS
RA 1,852,005 G→A R350H (CGT→CAT)  relA → ATP:GTP 3'‑pyrophosphotransferase
RA 4,741,283 C→G intergenic (+474/+278) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,285 2 bp→CT intergenic (+476/+275) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 5,610,048 C→A S173I (AGC→ATC)  PP_4929 ← LysR family transcriptional regulator
RA 6,180,730 C→G W258S (TGG→TCG)  atpB ← ATP synthase subunit a

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 337784 =58 (0.830)27 (0.490) 24/212 1.8 47.5% intergenic (‑31/+98) PP_0279/PP_0280 hypothetical protein/amino acid ABC transporter permease
?NC_002947 337868 = 14 (0.250)intergenic (‑115/+14) PP_0279/PP_0280 hypothetical protein/amino acid ABC transporter permease
* ? NC_002947 4808219 =0 (0.000)26 (0.500) 18/198 2.5 58.4% intergenic (‑283/‑272) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 = 5988991 37 (0.720)intergenic (+229/‑317) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? NC_002947 = 48082240 (0.000)42 (0.660) 23/244 2.5 51.2% intergenic (‑288/‑267) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 5988821 = 80 (1.250)intergenic (+59/‑487) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA