breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	72	G→T	100%	intergenic (–/+75)	– / ← parB	–/chromosome‑partitioning protein
RA	6,346	T→G	10.2%	T13P (ACG→CCG)	trmE ←	GTPase
RA	27,581	C→T	8.0%	intergenic (‑428/+18)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	27,584	A→G	8.0%	intergenic (‑431/+15)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	28,397	C→T	7.8%	R384H (CGC→CAC)	PP_0024 ←	membrane‑associated metal‑dependent hydrolase
RA	35,009	A→G	19.3%	intergenic (+27/+31)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	35,012	C→T	19.6%	intergenic (+30/+28)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	58,747	T→A	23.4%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	23.3%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	68,340	G→T	10.2%	intergenic (+28/+147)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,342	A→T	10.4%	intergenic (+30/+145)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,344	A→C	10.7%	intergenic (+32/+143)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	84,047	G→C	6.6%	E263Q (GAA→CAA)	hemF →	coproporphyrinogen‑III oxidase
RA	85,731	C→A	8.7%	M329I (ATG→ATT)	PP_0075 ←	choline sulfate transporter
RA	86,245	A→C	5.9%	M158R (ATG→AGG)	PP_0075 ←	choline sulfate transporter
RA	109,959	A→C	9.7%	intergenic (+22/‑22)	PP_0103 → / → ctaD	cytochrome c oxidase subunit 2/cytochrome c oxidase subunit 1
RA	109,962	G→T	8.3%	intergenic (+25/‑19)	PP_0103 → / → ctaD	cytochrome c oxidase subunit 2/cytochrome c oxidase subunit 1
RA	126,115	A→G	16.7%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	17.8%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	163,717	G→C	6.8%	A39A (GCC→GCG)	scpC ←	propionyl‑CoA:succinate CoA transferase
RA	166,856	A→T	10.7%	A17A (GCT→GCA)	pntAA ←	pyridine nucleotide transhydrogenase subunit alpha
RA	195,628	C→T	13.3%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	13.4%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	44.3%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	14.8%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	195,732	A→C	7.9%	N413T (AAC→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	24.7%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	28.2%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	25.8%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	26.7%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	9.5%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	5.6%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	10.0%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	9.2%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	12.9%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	18.4%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	13.1%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	200,773	T→C	9.1%	A2093A (GCT→GCC)	PP_0168 →	putative surface adhesion protein
RA	213,354	T→A	12.5%	L6287Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	249,248	T→C	8.1%	Q200Q (CAA→CAG)	qmcA ←	membrane protease family protein
RA	274,785	T→G	11.7%	D388A (GAC→GCC)	PP_0222 ←	DszA family monooxygenase
RA	274,788	A→T	11.6%	L387Q (CTG→CAG)	PP_0222 ←	DszA family monooxygenase
RA	274,791	C→A	11.9%	G386V (GGC→GTC)	PP_0222 ←	DszA family monooxygenase
RA	276,714	Δ1 bp	7.0%	coding (454/1221 nt)	PP_0223 ←	DszC family monooxygenase
RA	308,450	C→A	7.1%	intergenic (+1464/‑406)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	318,938	C→T	7.4%	S269N (AGC→AAC)	PP_0264 ←	sensor histidine kinase
RA	322,135	G→A	20.5%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,142	T→C	21.0%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	345,708	G→C	7.2%	A714G (GCC→GGC)	PP_0287 ←	hypothetical protein
RA	345,710	C→A	7.2%	L713L (CTG→CTT)	PP_0287 ←	hypothetical protein
RA	345,715	T→G	8.5%	K712Q (AAG→CAG)	PP_0287 ←	hypothetical protein
RA	345,717	G→C	7.5%	A711G (GCC→GGC)	PP_0287 ←	hypothetical protein
RA	346,135	T→C	5.9%	N572D (AAC→GAC)	PP_0287 ←	hypothetical protein
RA	358,088	A→G	13.3%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	C→T	12.9%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,093	T→C	14.3%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	G→A	14.3%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,097	A→G	14.3%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,099	C→T	13.8%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	359,603	A→G	7.1%	Q356R (CAG→CGG)	gbdR →	AraC family transcriptional regulator
RA	399,531	A→G	8.9%	V19A (GTG→GCG) ‡	PP_0332 ←	acyltransferase
RA	399,532	C→T	7.5%	V19M (GTG→ATG) ‡	PP_0332 ←	acyltransferase
RA	409,755	G→A	7.4%	A304A (GCC→GCT)	aceE ←	pyruvate dehydrogenase E1 component
RA	418,298	C→G	7.0%	L26L (CTC→CTG)	PP_0345 →	heptose kinase WapP
RA	418,299	C→G	7.0%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	459,553	T→G	7.3%	E102A (GAA→GCA)	pqqB ←	coenzyme PQQ synthesis protein B
RA	461,026	C→A	10.7%	R481L (CGG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,033	C→G	9.3%	V479L (GTG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,040	T→G	9.3%	P476P (CCA→CCC)	pqqF ←	coenzyme PQQ synthesis protein F
RA	467,101	A→G	10.0%	intergenic (‑31/+22)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	467,104	C→T	10.4%	intergenic (‑34/+19)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	471,069	T→C	11.9%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,070	G→A	12.0%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	483,565	C→A	8.7%	G293C (GGC→TGC)	yeaG ←	protein kinase
RA	484,691	C→T	9.8%	intergenic (‑250/+33)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	484,695	G→C	9.4%	intergenic (‑254/+29)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	484,699	A→G	9.1%	intergenic (‑258/+25)	yeaG ← / ← glpE	protein kinase/thiosulfate sulfurtransferase GlpE
RA	493,102	G→A	8.7%	Q183Q (CAG→CAA)	PP_0405 →	hypothetical protein
RA	535,821	G→T	15.0%	E85* (GAA→TAA) ‡	rplA →	50S ribosomal protein L1
RA	535,822	A→C	15.2%	E85A (GAA→GCA) ‡	rplA →	50S ribosomal protein L1
RA	539,618	G→A	8.5%	V665I (GTT→ATT)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	541,440	A→G	9.5%	Q1272R (CAG→CGG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	541,443	C→T	9.5%	P1273L (CCG→CTG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	543,730	A→G	12.2%	N656S (AAC→AGC)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	543,733	C→T	11.9%	A657V (GCT→GTT)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	556,981	C→T	10.2%	R9R (CGC→CGT)	rpsN →	30S ribosomal protein S14
RA	556,989	A→C	8.9%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,992	G→T	9.1%	R13L (CGT→CTT)	rpsN →	30S ribosomal protein S14
RA	557,000	A→G	8.5%	T16A (ACG→GCG)	rpsN →	30S ribosomal protein S14
RA	557,191	G→T	6.1%	L79L (CTG→CTT)	rpsN →	30S ribosomal protein S14
RA	564,380:1	+A	9.5%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,385	Δ1 bp	9.1%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	571,217	G→C	12.0%	K62N (AAG→AAC)	ssb →	single‑stranded DNA‑binding protein
RA	571,218	G→C	12.0%	V63L (GTT→CTT)	ssb →	single‑stranded DNA‑binding protein
RA	578,044	C→A	8.7%	Q4K (CAA→AAA)	fdoH →	formate dehydrogenase‑O subunit beta
RA	593,436	G→T	7.1%	E391* (GAG→TAG) ‡	PP_0503 →	MFS transporter
RA	593,437	A→C	6.5%	E391A (GAG→GCG) ‡	PP_0503 →	MFS transporter
RA	605,124	G→A	7.9%	R145H (CGC→CAC)	thiL →	thiamin monophosphate kinase
RA	612,749	G→A	6.3%	A479V (GCT→GTT)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,755	G→C	6.8%	P477R (CCG→CGG)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,761	T→C	9.0%	N475S (AAC→AGC)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	617,199	G→A	9.0%	R175H (CGT→CAT)	PP_0531 →	hypothetical protein
RA	644,135	C→A	9.2%	E295D (GAG→GAT)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	648,290	A→C	15.5%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,292	A→T	13.7%	intergenic (+58/+33)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,294	G→T	14.3%	intergenic (+60/+31)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	659,628	C→A	10.8%	S224Y (TCC→TAC)	speA →	biosynthetic arginine decarboxylase
RA	684,844	Δ1 bp	6.3%	coding (1406/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	684,849:1	+A	6.7%	coding (1401/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	697,217	T→C	18.6%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	16.7%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,231	C→G	16.7%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,725	A→G	46.2%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,766:1	+G	8.9%	intergenic (+11/‑121)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,769	Δ1 bp	8.5%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	709,197	C→G	12.3%	intergenic (+57/‑62)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	709,200	C→A	10.6%	intergenic (+60/‑59)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	709,202	T→A	10.6%	intergenic (+62/‑57)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	709,204	T→G	9.9%	intergenic (+64/‑55)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	709,207	C→G	10.8%	intergenic (+67/‑52)	murJ → / → ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
RA	764,126	T→C	9.7%	Q133R (CAG→CGG)	PP_0656 ←	putative Amino acid ABC transporter permease
RA	783,242	T→C	7.1%	D896G (GAC→GGC)	PP_0672 ←	sensory box protein
RA	783,245	C→G	7.3%	G895A (GGC→GCC)	PP_0672 ←	sensory box protein
RA	783,248	G→A	7.2%	A894V (GCC→GTC)	PP_0672 ←	sensory box protein
RA	788,584	C→A	20.1%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	A→T	20.0%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,587	A→T	20.0%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,589	T→G	20.1%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,599	T→C	16.3%	intergenic (+46/‑167)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	797,512	G→A	10.9%	intergenic (+33/‑44)	PP_0682 → / → PP_0683	inner membrane protein/hypothetical protein
RA	799,844	T→A	13.5%	D211V (GAC→GTC)	ispB ←	octaprenyl diphosphate synthase
RA	799,850	A→T	11.9%	L209Q (CTG→CAG)	ispB ←	octaprenyl diphosphate synthase
RA	811,322	T→A	8.7%	H167Q (CAT→CAA)	PP_5455 →	hypothetical protein
RA	811,323	T→A	8.3%	L168M (TTG→ATG)	PP_5455 →	hypothetical protein
RA	865,406	G→T	13.5%	A141A (GCC→GCA)	upp ←	uracil phosphoribosyltransferase
RA	865,409	A→C	11.7%	V140V (GTT→GTG)	upp ←	uracil phosphoribosyltransferase
RA	904,937	Δ1 bp	8.0%	coding (1193/2160 nt)	PP_0788 →	hypothetical protein
RA	904,944:1	+G	8.0%	coding (1200/2160 nt)	PP_0788 →	hypothetical protein
RA	914,627	Δ1 bp	9.1%	coding (1335/1743 nt)	fruA →	PTS fructose transporter subunit IIBC
RA	914,638	C→G	8.6%	A449G (GCC→GGC)	fruA →	PTS fructose transporter subunit IIBC
RA	914,647:1	+C	9.1%	coding (1355/1743 nt)	fruA →	PTS fructose transporter subunit IIBC
RA	916,472	C→T	5.1%	L366L (CTG→CTA)	PP_0798 ←	GGDEF domain‑containing protein
RA	919,675	G→C	12.6%	intergenic (‑143/+48)	PP_5458 ← / ← PP_0800	hypothetical protein/hypothetical protein
RA	937,766	A→T	8.3%	L2620Q (CTG→CAG)	PP_0806 ←	surface adhesion protein
RA	937,771	A→T	8.3%	A2618A (GCT→GCA)	PP_0806 ←	surface adhesion protein
RA	939,922	Δ1 bp	7.9%	coding (5703/18933 nt)	PP_0806 ←	surface adhesion protein
RA	939,928:1	+C	7.7%	coding (5697/18933 nt)	PP_0806 ←	surface adhesion protein
RA	953,224	T→C	8.9%	A10A (GCT→GCC)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,232	A→G	10.0%	H13R (CAC→CGC) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,233	C→T	10.5%	H13H (CAC→CAT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	955,155	T→A	16.7%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	975,290	A→T	6.1%	intergenic (+136/+33)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	975,291	A→T	6.1%	intergenic (+137/+32)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	977,876	T→A	8.4%	intergenic (+39/‑141)	cysE → / → iscR	serine acetyltransferase/DNA‑binding transcriptional regulator IscR
RA	977,879	T→A	8.0%	intergenic (+42/‑138)	cysE → / → iscR	serine acetyltransferase/DNA‑binding transcriptional regulator IscR
RA	980,752	T→G	6.9%	L64R (CTG→CGG)	hscB →	DnaJ‑like molecular chaperone
RA	980,758	G→C	6.9%	S66T (AGT→ACT)	hscB →	DnaJ‑like molecular chaperone
RA	980,764	C→A	7.3%	P68Q (CCG→CAG)	hscB →	DnaJ‑like molecular chaperone
RA	981,260	C→G	7.7%	P45R (CCC→CGC)	hscA →	DnaK‑like molecular chaperone
RA	981,263	A→T	7.7%	D46V (GAC→GTC)	hscA →	DnaK‑like molecular chaperone
RA	981,266	C→G	7.8%	A47G (GCG→GGG)	hscA →	DnaK‑like molecular chaperone
RA	990,700	T→A	7.1%	L193Q (CTG→CAG)	PP_0856 →	lipoprotein
RA	991,557	G→A	8.7%	G59D (GGT→GAT)	der →	GTPase Der
RA	991,560	T→C	8.6%	I60T (ATC→ACC)	der →	GTPase Der
RA	1,013,192	T→C	11.1%	intergenic (+17/+114)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,195	T→C	11.2%	intergenic (+20/+111)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,197	T→A	11.1%	intergenic (+22/+109)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,200	A→G	13.3%	intergenic (+25/+106)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,231	A→T	16.1%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,031,922	T→A	11.5%	L5M (TTG→ATG) ‡	PP_0889 →	hypothetical protein
RA	1,031,923	T→A	11.1%	L5* (TTG→TAG) ‡	PP_0889 →	hypothetical protein
RA	1,070,265	G→C	14.0%	intergenic (+62/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,268	G→C	13.6%	intergenic (+65/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,082,393	Δ1 bp	7.8%	coding (2043/3822 nt)	PP_0938 →	hypothetical protein
RA	1,096,745	G→C	7.6%	G74G (GGC→GGG)	lptB ←	ABC transporter ATP‑binding protein
RA	1,109,576:1	+C	7.0%	coding (237/651 nt)	PP_0969 →	GntR family transcriptional regulator
RA	1,130,198	A→T	19.1%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,132,165	C→T	8.0%	A52T (GCA→ACA)	PP_0992 ←	hypothetical protein
RA	1,145,446	G→A	11.1%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,447	T→C	11.4%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,454	A→G	13.7%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,169,311	T→C	6.4%	I369V (ATC→GTC)	leuA ←	2‑isopropylmalate synthase
RA	1,169,312	G→A	6.6%	D368D (GAC→GAT)	leuA ←	2‑isopropylmalate synthase
RA	1,178,335	G→A	10.2%	P404P (CCG→CCA)	guaA →	glutamine‑hydrolyzing GMP synthase
RA	1,184,591	G→C	18.0%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,594	G→C	20.1%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,611	C→T	13.2%	intergenic (‑221/‑191)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,618	A→T	13.1%	intergenic (‑228/‑184)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,207,680	G→A	6.9%	L443L (CTG→TTG)	PP_1058 ←	hypothetical protein
RA	1,207,681	T→C	6.9%	Q442Q (CAA→CAG)	PP_1058 ←	hypothetical protein
RA	1,275,090	G→C	7.8%	intergenic (‑281/+31)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,275,093	G→C	8.2%	intergenic (‑284/+28)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,281,197	A→T	20.5%	intergenic (+17/+26)	PP_5742 → / ← PP_1118	membrane protein/recombinase‑like protein
RA	1,281,200	A→T	20.5%	intergenic (+20/+23)	PP_5742 → / ← PP_1118	membrane protein/recombinase‑like protein
RA	1,295,019	Δ1 bp	10.3%	intergenic (+29/+41)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,024	T→A	13.4%	intergenic (+34/+36)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,027	T→A	10.2%	intergenic (+37/+33)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,031:1	+T	15.0%	intergenic (+41/+29)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,310,124	A→T	10.9%	L472Q (CTG→CAG)	PP_1144 ←	membrane protein
RA	1,310,130	A→T	10.5%	L470Q (CTG→CAG)	PP_1144 ←	membrane protein
RA	1,310,136	A→T	11.1%	L468Q (CTG→CAG)	PP_1144 ←	membrane protein
RA	1,312,981	A→T	7.3%	L561Q (CTG→CAG)	rapA ←	RNA polymerase‑associated protein RapA
RA	1,317,344	G→C	9.1%	Q252H (CAG→CAC)	PP_1150 →	membrane protein
RA	1,323,109	G→T	10.0%	R251R (CGC→CGA)	PP_1155 ←	YaiC/YhcK/ArdA family protein
RA	1,327,127	C→T	54.6%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,366,560	C→A	7.0%	R49L (CGC→CTC)	PP_1191 ←	S4 domain‑containing protein
RA	1,376,327	A→T	12.5%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,328	G→C	12.8%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,329	A→T	12.8%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,388,117	C→T	7.8%	G127S (GGC→AGC)	PP_1209 ←	cold‑shock protein
RA	1,411,791	C→A	6.9%	L50L (CTG→CTT)	PP_1232 ←	hypothetical protein
RA	1,416,868	G→A	10.4%	R37Q (CGG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,874	T→A	9.3%	L39Q (CTG→CAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,880	T→C	9.6%	L41P (CTG→CCG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,417,334	Δ1 bp	9.8%	coding (576/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,417,338:1	+A	10.0%	coding (580/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,417,615	G→A	8.5%	R23H (CGC→CAC)	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,422,785	C→G	11.3%	T453T (ACC→ACG)	PP_1246 →	hypothetical protein
RA	1,422,786	C→G	11.3%	R454G (CGT→GGT)	PP_1246 →	hypothetical protein
RA	1,457,153	G→A	11.2%	Y111Y (TAC→TAT)	PP_1275 ←	hypothetical protein
RA	1,457,156	T→C	14.4%	R110R (CGA→CGG)	PP_1275 ←	hypothetical protein
RA	1,457,924	T→G	11.4%	V92V (GTT→GTG)	PP_1276 →	hypothetical protein
RA	1,457,925	C→A	13.6%	H93N (CAC→AAC)	PP_1276 →	hypothetical protein
RA	1,476,852	G→T	5.7%	R303L (CGG→CTG)	PP_1290 →	polysaccharide deacetylase family protein
RA	1,491,138	Δ1 bp	6.8%	coding (794/1902 nt)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,491,144	G→C	7.0%	S267T (AGT→ACT)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,503,474	G→T	14.3%	E90* (GAG→TAG) ‡	rplM →	50S ribosomal protein L13
RA	1,503,475	A→C	14.3%	E90A (GAG→GCG) ‡	rplM →	50S ribosomal protein L13
RA	1,508,087	G→A	15.0%	intergenic (+17/+45)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,088	G→T	12.6%	intergenic (+18/+44)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,089	A→C	12.5%	intergenic (+19/+43)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,090	T→C	12.7%	intergenic (+20/+42)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,544,531	C→A	32.0%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,534	G→C	33.2%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,536	C→G	34.3%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,541	C→G	34.3%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,543	G→C	34.1%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,546	T→G	36.3%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,551,324	G→T	7.9%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,327	A→C	7.9%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,555,429:1	+C	13.3%	intergenic (+25/+49)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,432	Δ1 bp	13.3%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,556,583	C→G	9.5%	P149A (CCG→GCG) ‡	purU‑II →	formyltetrahydrofolate hydrolase
RA	1,556,584	C→G	9.7%	P149R (CCG→CGG) ‡	purU‑II →	formyltetrahydrofolate hydrolase
RA	1,574,303	C→A	9.8%	R73S (CGC→AGC)	pcaC →	4‑carboxymuconolactone decarboxylase
RA	1,592,024	C→A	23.5%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,592,029	T→G	23.5%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,594,291	T→C	10.5%	T392A (ACC→GCC)	kgtP ←	alpha‑ketoglutarate permease
RA	1,594,292	G→A	8.7%	G391G (GGC→GGT)	kgtP ←	alpha‑ketoglutarate permease
RA	1,625,528	G→T	7.5%	V451V (GTC→GTA)	nadB ←	L‑aspartate oxidase
RA	1,632,135	C→T	13.2%	P283S (CCT→TCT) ‡	lepA →	elongation factor 4
RA	1,632,137	T→A	12.5%	P283P (CCT→CCA) ‡	lepA →	elongation factor 4
RA	1,632,139	A→G	12.9%	E284G (GAG→GGG)	lepA →	elongation factor 4
RA	1,637,357	T→C	10.8%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,367	A→T	10.8%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,368	A→T	10.7%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,378	G→A	11.2%	intergenic (+45/+21)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,386	C→T	9.8%	intergenic (+53/+13)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,394	G→A	9.7%	intergenic (+61/+5)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,647,558	C→T	8.1%	L402L (CTG→CTA)	oprB‑II ←	carbohydrate‑selective porin
RA	1,688,589	G→A	8.7%	P330P (CCC→CCT)	ydcT ←	polyamine ABC transporter ATP‑binding protein
RA	1,691,825	C→A	11.8%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,828	T→G	11.9%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,832	C→A	7.5%	R87S (CGC→AGC) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,693,834	C→G	7.2%	R87R (CGC→CGG) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,698,852	Δ1 bp	9.0%	coding (558/1014 nt)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,698,856:1	+C	9.2%	coding (562/1014 nt)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,703,294:1	+T	23.7%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,732,498	C→A	8.8%	A472S (GCC→TCC)	PP_1526 ←	beta‑(1‑3)‑glucosyl transferase
RA	1,750,775	C→G	9.5%	A31G (GCC→GGC)	PP_1551 →	replication protein O
RA	1,763,725	T→G	8.2%	C9G (TGC→GGC)	PP_1572 →	hypothetical protein
RA	1,776,092	C→T	9.2%	G42G (GGC→GGT)	PP_1583 →	structural protein P5
RA	1,787,722	G→A	8.2%	A156T (GCC→ACC)	pyrH →	uridylate kinase
RA	1,797,384	Δ1 bp	11.1%	coding (43/777 nt)	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,797,387:1	+T	10.9%	coding (46/777 nt)	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,825,133	G→C	9.3%	R55G (CGC→GGC)	mutS ←	DNA mismatch repair protein MutS
RA	1,825,134	G→C	8.8%	A54A (GCC→GCG)	mutS ←	DNA mismatch repair protein MutS
RA	1,827,681	C→A	10.5%	L165M (CTG→ATG)	recA →	recombinase RecA
RA	1,827,748	T→C	10.5%	L187P (CTG→CCG)	recA →	recombinase RecA
RA	1,843,487	G→T	100%	S450* (TCA→TAA)	gacS ←	sensor protein GacS
RA	1,846,339	Δ1 bp	6.9%	coding (588/1377 nt)	pfeS‑II →	histidine kinase
RA	1,846,345:1	+A	7.0%	coding (594/1377 nt)	pfeS‑II →	histidine kinase
RA	1,850,958	T→A	100%	M1K (ATG→AAG) †	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,859,569	A→C	10.0%	intergenic (‑119/+37)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,571	T→A	7.5%	intergenic (‑121/+35)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,573	G→T	7.5%	intergenic (‑123/+33)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,880,895	G→T	6.7%	G176V (GGC→GTC)	PP_1688 →	LysR family transcriptional regulator
RA	1,888,482	T→A	9.2%	E611D (GAA→GAT)	PP_1695 ←	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
RA	1,888,487	T→A	7.4%	I610F (ATC→TTC)	PP_1695 ←	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
RA	1,890,197	A→G	8.8%	W40R (TGG→CGG)	PP_1695 ←	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
RA	1,899,849	A→T	10.9%	K120* (AAG→TAG) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,899,850	A→T	10.9%	K120M (AAG→ATG) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,907,549	T→C	7.6%	T78A (ACC→GCC)	PP_1707 ←	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	1,915,631	G→A	13.0%	intergenic (+17/‑272)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,640:1	+A	13.3%	intergenic (+26/‑263)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,644	T→A	15.1%	intergenic (+30/‑259)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,647	Δ1 bp	13.6%	intergenic (+33/‑256)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,964,757	A→T	6.7%	Q309L (CAG→CTG)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,965,044	C→T	5.5%	L405L (CTG→TTG)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,977,279	C→G	9.1%	R300R (CGC→CGG)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	2,019,126	C→A	18.0%	L120M (CTG→ATG) ‡	PP_1797 →	HlyD family secretion protein
RA	2,019,127	T→G	18.4%	L120R (CTG→CGG) ‡	PP_1797 →	HlyD family secretion protein
RA	2,041,980	C→A	10.3%	G207C (GGC→TGC)	PP_1816 ←	alcohol dehydrogenase
RA	2,045,212	A→C	6.3%	D128A (GAC→GCC)	PP_1819 →	methyl‑accepting chemotaxis transducer
RA	2,045,217	G→T	6.5%	A130S (GCC→TCC)	PP_1819 →	methyl‑accepting chemotaxis transducer
RA	2,068,194	A→T	11.1%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,068,195	A→T	11.3%	intergenic (‑97/+24)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,080,393	G→C	10.4%	A340A (GCG→GCC)	earP →	EF‑P arginine 32 rhamnosyl‑transferase
RA	2,092,423	G→A	13.5%	intergenic (+26/+65)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,425	T→C	13.2%	intergenic (+28/+63)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,428	G→A	12.7%	intergenic (+31/+60)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,430	T→C	12.7%	intergenic (+33/+58)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,094,951	C→T	10.2%	V14V (GTG→GTA)	htpX ←	protease HtpX
RA	2,101,429	G→C	6.7%	T135T (ACG→ACC)	msrC →	free methionine‑(R)‑sulfoxide reductase
RA	2,103,042	C→G	11.2%	noncoding (35/76 nt)	PP_t23 →	tRNA‑Gly
RA	2,134,314	A→C	9.3%	intergenic (‑37/+32)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,321	G→T	11.1%	intergenic (‑44/+25)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,139,665	T→G	11.1%	Q167H (CAA→CAC)	PP_5481 ←	hypothetical protein
RA	2,139,671	A→T	14.0%	R165R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,674	A→T	13.9%	R164R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,680	C→A	14.7%	Q162H (CAG→CAT)	PP_5481 ←	hypothetical protein
RA	2,163,478	T→A	11.4%	I99N (ATT→AAT)	PP_5482 →	hypothetical protein
RA	2,240,419	A→T	9.5%	D202V (GAC→GTC)	gltX →	glutamate‑‑tRNA ligase
RA	2,242,141	G→C	14.6%	noncoding (35/76 nt)	PP_t29 →	tRNA‑Ala
RA	2,263,099	G→T	6.8%	L257L (CTG→CTT)	truA →	tRNA pseudouridine (38‑40)synthase
RA	2,264,059	C→G	8.3%	intergenic (+188/‑35)	trpF → / → accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
RA	2,265,299	Δ1 bp	8.7%	coding (316/1311 nt)	folC →	bifunctional folypolyglutamate synthase/dihydrofolate synthase
RA	2,265,303:1	+C	8.7%	coding (320/1311 nt)	folC →	bifunctional folypolyglutamate synthase/dihydrofolate synthase
RA	2,273,105	C→G	12.3%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,109	A→T	13.7%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,113	C→G	12.0%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,277,603	C→T	9.3%	V340V (GTG→GTA)	PP_2007 ←	P‑47‑like protein
RA	2,281,073	T→A	6.1%	intergenic (+88/‑149)	fadH → / → PP_2009	2,4‑dienoyl‑CoA reductase/1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,281,675	G→C	8.4%	G152R (GGC→CGC) ‡	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,281,676	G→C	7.7%	G152A (GGC→GCC) ‡	PP_2009 →	1‑aminocyclopropane‑1‑carboxylate deaminase
RA	2,282,780	T→G	15.4%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,813	T→G	26.4%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,817	G→C	25.0%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,818	G→C	25.0%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,822	C→A	25.0%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,296,475	G→T	5.0%	L19M (CTG→ATG)	PP_2023 ←	glutathione S‑transferase family protein
RA	2,306,272	T→C	6.9%	S110G (AGC→GGC)	PP_2028 ←	TPR repeat‑containing protein
RA	2,315,536	G→A	5.8%	L153L (CTC→CTT)	PP_2037 ←	aldolase
RA	2,318,392	G→A	10.5%	A197A (GCG→GCA)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,364,888	C→G	6.7%	M199I (ATG→ATC)	lysA‑I ←	diaminopimelate decarboxylase
RA	2,392,071	G→C	10.7%	R186P (CGG→CCG)	PP_2097 →	sensory box protein
RA	2,395,626	G→C	19.4%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,628	A→T	19.2%	intergenic (‑193/+50)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,630	G→C	20.4%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,412,947	G→C	13.1%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,444,458	A→C	18.4%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,444,462	G→T	15.8%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,463	A→C	15.8%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,467	G→T	15.8%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,447,461	G→C	12.5%	L269L (CTG→CTC)	nagZ →	beta‑N‑acetylglucosaminidase
RA	2,470,830	G→A	9.1%	V118M (GTG→ATG)	PP_2165 →	two‑component system response regulator
RA	2,471,094	T→C	10.8%	F206L (TTC→CTC)	PP_2165 →	two‑component system response regulator
RA	2,500,613	G→A	11.4%	intergenic (+17/+8)	PP_2193 → / ← PP_2194	ferric siderophore receptor/LysR family transcriptional regulator
RA	2,500,618	T→C	10.3%	intergenic (+22/+3)	PP_2193 → / ← PP_2194	ferric siderophore receptor/LysR family transcriptional regulator
RA	2,515,922	C→T	7.5%	A217T (GCC→ACC)	phnW ←	2‑aminoethylphosphonate‑‑pyruvate transaminase
RA	2,520,750	T→A	9.9%	L653Q (CTG→CAG)	PP_2212 →	leucine‑rich repeat‑containing protein
RA	2,535,042	C→T	7.8%	A262T (GCC→ACC)	mrpD ←	K(+)/H(+) antiporter subunit D
RA	2,540,852	T→A	9.7%	intergenic (+22/+27)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,853	G→C	9.8%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,854	T→A	9.1%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,565,917	G→T	10.2%	R360S (CGT→AGT)	pctB ←	methyl‑accepting chemotaxis protein PctB
RA	2,569,698	G→A	8.1%	intergenic (‑108/+44)	PP_2252 ← / ← PP_2253	hypothetical protein/GntR family transcriptional regulator
RA	2,575,089	G→A	9.3%	G75S (GGC→AGC)	PP_2258 →	sensory box protein
RA	2,585,151	G→T	11.1%	G129G (GGC→GGA)	folD‑II ←	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,669,714	T→G	12.7%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,669,717	C→A	12.5%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,673,147	Δ1 bp	9.5%	coding (418/519 nt)	PP_2340 →	hypothetical protein
RA	2,673,153:1	+C	9.3%	coding (424/519 nt)	PP_2340 →	hypothetical protein
RA	2,680,476	A→T	14.3%	A274A (GCT→GCA) ‡	PP_2350 ←	LysR family transcriptional regulator
RA	2,680,478	C→G	14.5%	A274P (GCT→CCT) ‡	PP_2350 ←	LysR family transcriptional regulator
RA	2,680,481	C→G	14.7%	V273L (GTA→CTA)	PP_2350 ←	LysR family transcriptional regulator
RA	2,680,483	A→T	15.0%	L272Q (CTG→CAG)	PP_2350 ←	LysR family transcriptional regulator
RA	2,685,639	T→A	14.4%	Q709L (CAG→CTG)	PP_2354 ←	two‑component system sensor histidine kinase/response regulator
RA	2,693,853	T→C	8.5%	V34A (GTC→GCC)	PP_2362 →	usher protein
RA	2,695,019	C→G	9.3%	H423D (CAC→GAC)	PP_2362 →	usher protein
RA	2,695,023	A→T	10.9%	Q424L (CAG→CTG)	PP_2362 →	usher protein
RA	2,695,027	C→G	10.7%	V425V (GTC→GTG)	PP_2362 →	usher protein
RA	2,711,029	T→G	9.1%	intergenic (+289/+25)	PP_2373 → / ← PP_2374	hypothetical protein/hypothetical protein
RA	2,720,805:1	+T	8.2%	intergenic (+16/+34)	PP_2380 → / ← PP_2381	hypothetical protein/hypothetical protein
RA	2,720,807	T→A	8.7%	intergenic (+18/+32)	PP_2380 → / ← PP_2381	hypothetical protein/hypothetical protein
RA	2,720,808	T→A	8.7%	intergenic (+19/+31)	PP_2380 → / ← PP_2381	hypothetical protein/hypothetical protein
RA	2,720,810	Δ1 bp	8.7%	intergenic (+21/+29)	PP_2380 → / ← PP_2381	hypothetical protein/hypothetical protein
RA	2,729,285	T→G	7.0%	intergenic (+49/‑312)	PP_2390 → / → PP_2392	LysR family transcriptional regulator/MFS transporter
RA	2,730,937	C→G	10.1%	R77R (CGC→CGG)	polB →	DNA polymerase II
RA	2,730,938	C→G	8.6%	P78A (CCG→GCG)	polB →	DNA polymerase II
RA	2,776,725	C→G	13.2%	S343S (TCC→TCG)	sotB →	sugar efflux transporter
RA	2,799,214	A→G	12.5%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,220	C→T	15.6%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,223	A→G	12.9%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,229	C→T	13.0%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,841,979	T→A	10.8%	intergenic (‑115/+137)	yqhD ← / ← PP_2493	NAD(P)‑dependent alcohol dehydrogenase/RadC family protein
RA	2,897,767	T→A	5.9%	intergenic (+98/‑52)	PP_2551 → / → PP_2552	LysR family transcriptional regulator/DOPA decarboxylase
RA	2,897,768	T→A	7.0%	intergenic (+99/‑51)	PP_2551 → / → PP_2552	LysR family transcriptional regulator/DOPA decarboxylase
RA	2,911,837	G→A	7.1%	A272T (GCC→ACC)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,926,933	C→T	7.5%	R53C (CGC→TGC)	PP_2565 →	UvrD/REP family helicase
RA	2,926,936	A→G	7.3%	T54A (ACT→GCT)	PP_2565 →	UvrD/REP family helicase
RA	2,944,459	A→C	8.2%	D282A (GAC→GCC)	PP_2577 →	paraquat‑inducible protein B
RA	2,944,464	G→T	5.9%	A284S (GCG→TCG)	PP_2577 →	paraquat‑inducible protein B
RA	2,944,468	T→G	5.7%	L285R (CTG→CGG)	PP_2577 →	paraquat‑inducible protein B
RA	2,948,640	T→G	8.8%	D162A (GAC→GCC) ‡	PP_2582 ←	heme oxygenase
RA	2,948,641	C→A	8.8%	D162Y (GAC→TAC) ‡	PP_2582 ←	heme oxygenase
RA	2,951,377	G→C	11.3%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,384	A→C	10.7%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,385	G→T	10.7%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,392	G→C	14.3%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,958,833	T→C	10.2%	intergenic (+56/+86)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,842	G→C	8.1%	intergenic (+65/+77)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,843	T→C	9.0%	intergenic (+66/+76)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,846	G→C	8.1%	intergenic (+69/+73)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,850	G→C	8.6%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,958,859	G→A	8.9%	intergenic (+82/+60)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,962,409	G→T	7.8%	Q210K (CAG→AAG)	PP_2592 ←	ferric siderophore ABC transporter ATP‑binding protein
RA	2,965,867	C→T	7.7%	G268D (GGC→GAC)	PP_2595 ←	ABC transporter permease/ATP‑binding protein
RA	2,972,365	C→T	8.0%	D518N (GAT→AAT)	PP_2600 ←	hypothetical protein
RA	2,974,658	G→A	8.2%	R183H (CGC→CAC)	PP_2601 →	IclR family transcriptional regulator
RA	2,974,667	A→G	7.7%	E186G (GAG→GGG)	PP_2601 →	IclR family transcriptional regulator
RA	2,974,671	T→C	7.9%	R187R (CGT→CGC)	PP_2601 →	IclR family transcriptional regulator
RA	2,991,565:1	+A	11.8%	intergenic (‑43/+32)	vgrG‑I ← / ← hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
RA	2,991,568	G→C	11.8%	intergenic (‑46/+29)	vgrG‑I ← / ← hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
RA	2,991,572	Δ1 bp	10.3%	intergenic (‑50/+25)	vgrG‑I ← / ← hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
RA	2,991,576	T→C	10.7%	intergenic (‑54/+21)	vgrG‑I ← / ← hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
RA	3,001,858	C→G	6.9%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,001,864	G→A	9.4%	R182Q (CGG→CAG)	PP_2625 →	hypothetical protein
RA	3,001,867	G→C	7.5%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,006,511	T→G	10.0%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,516	G→T	9.7%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,517	A→C	10.0%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,010,358	G→A	8.3%	intergenic (‑1221/‑447)	PP_2628 ← / → PP_2631	ABC transporter ATP‑binding protein/cellulose biosynthesis protein BcsF/YhjT
RA	3,030,147	A→C	13.5%	intergenic (+104/‑590)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,150	G→T	13.5%	intergenic (+107/‑587)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,818	A→T	8.2%	K28* (AAG→TAG) ‡	mgtA →	ATP‑dependent magnesium transporter
RA	3,030,819	A→T	8.5%	K28M (AAG→ATG) ‡	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,125	A→T	9.0%	K130M (AAG→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,132	C→G	10.0%	I132M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,135	C→G	11.5%	I133M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,138	C→G	10.0%	I134M (ATC→ATG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,031,145	A→T	6.9%	M137L (ATG→TTG)	mgtA →	ATP‑dependent magnesium transporter
RA	3,048,647	G→T	13.9%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,048,648	A→C	11.6%	intergenic (+60/‑236)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,101,121	G→A	8.1%	V127I (GTC→ATC) ‡	PP_2710 →	hypothetical protein
RA	3,101,122	T→C	8.0%	V127A (GTC→GCC) ‡	PP_2710 →	hypothetical protein
RA	3,123,227	G→C	13.7%	G207R (GGG→CGG) ‡	PP_2740 →	MerR family transcriptional regulator
RA	3,123,228	G→C	13.7%	G207A (GGG→GCG) ‡	PP_2740 →	MerR family transcriptional regulator
RA	3,146,621	G→C	12.7%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,622	G→C	13.1%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,156,328	A→C	9.6%	S392A (TCT→GCT)	PP_2772 ←	monooxygenase
RA	3,162,567	T→C	11.1%	intergenic (+471/‑109)	PP_2776 → / → PP_2777	homocysteine S‑methyltransferase family protein/acyl carrier protein
RA	3,162,570	G→A	12.5%	intergenic (+474/‑106)	PP_2776 → / → PP_2777	homocysteine S‑methyltransferase family protein/acyl carrier protein
RA	3,166,022	G→T	6.3%	M137I (ATG→ATT)	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,183,371	G→T	7.1%	E330* (GAG→TAG) ‡	PP_2793 →	acyl‑CoA dehydrogenase family protein
RA	3,183,372	A→C	7.3%	E330A (GAG→GCG) ‡	PP_2793 →	acyl‑CoA dehydrogenase family protein
RA	3,189,321	G→C	11.5%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,189,322	G→C	11.1%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,194,256	C→G	6.8%	L219L (CTG→CTC)	PP_2802 ←	amino acid permease family protein
RA	3,194,261	T→A	7.1%	T218S (ACG→TCG)	PP_2802 ←	amino acid permease family protein
RA	3,216,734	C→G	10.9%	A869G (GCC→GGC)	mexD →	multidrug RND transporter MexD
RA	3,257,523	G→C	11.4%	A158G (GCC→GGC)	PP_2854 ←	hypothetical protein
RA	3,258,880	G→A	7.1%	S452L (TCG→TTG)	PP_2856 ←	hypothetical protein
RA	3,269,946	G→T	8.0%	L64M (CTG→ATG)	PP_2868 ←	Cro/CI family transcriptional regulator
RA	3,287,319	T→C	15.2%	intergenic (+17/+24)	PP_2889 → / ← xthA	transmembrane regulator PrtR/exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,287,320	G→A	14.7%	intergenic (+18/+23)	PP_2889 → / ← xthA	transmembrane regulator PrtR/exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,292,503	G→A	7.7%	A582T (GCC→ACC)	PP_2893 →	hypothetical protein
RA	3,296,544	T→C	7.9%	Q125R (CAG→CGG) ‡	PP_2898 ←	hypothetical protein
RA	3,296,545	G→A	7.7%	Q125* (CAG→TAG) ‡	PP_2898 ←	hypothetical protein
RA	3,313,868	C→A	21.5%	intergenic (+30/‑129)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,313,871	T→G	22.8%	intergenic (+33/‑126)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,330,770	T→C	9.5%	K49E (AAG→GAG)	PP_2928 ←	saccharopine dehydrogenase
RA	3,376,478	Δ1 bp	8.9%	intergenic (+10/‑138)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,376,482	G→C	10.8%	intergenic (+14/‑134)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,376,485:1	+T	9.3%	intergenic (+17/‑131)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,379,626	T→C	7.3%	H189R (CAT→CGT)	tnpS ←	cointegrate resolution protein S
RA	3,380,583	T→A	12.7%	L71Q (CTG→CAG)	tnpT‑I →	cointegrate resolution protein T
RA	3,397,589	C→T	7.3%	G9G (GGC→GGT)	PP_3002 →	shikimate dehydrogenase‑like protein
RA	3,397,592	A→G	8.9%	R10R (CGA→CGG)	PP_3002 →	shikimate dehydrogenase‑like protein
RA	3,430,392	G→C	8.9%	S189S (TCG→TCC)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,436,515	G→T	6.3%	R136L (CGC→CTC)	gpI →	tail formation protein
RA	3,442,347	C→A	7.0%	L355M (CTG→ATG)	PP_3062 →	tail length determination protein
RA	3,460,269	Δ1 bp	9.3%	coding (136/1446 nt)	PP_3075 ←	transcriptional regulator
RA	3,460,273:1	+A	9.1%	coding (132/1446 nt)	PP_3075 ←	transcriptional regulator
RA	3,484,613	C→T	7.3%	G452S (GGT→AGT)	PP_3091 ←	membrane protein
RA	3,505,303	Δ1 bp	9.4%	coding (382/1074 nt)	PP_3103 ←	hypothetical protein
RA	3,505,308:1	+G	10.2%	coding (377/1074 nt)	PP_3103 ←	hypothetical protein
RA	3,516,644	C→T	13.7%	intergenic (+641/‑494)	PP_5576 → / → PP_5578	hypothetical protein/hypothetical protein
RA	3,516,647	G→T	12.2%	intergenic (+644/‑491)	PP_5576 → / → PP_5578	hypothetical protein/hypothetical protein
RA	3,516,648	A→C	12.2%	intergenic (+645/‑490)	PP_5576 → / → PP_5578	hypothetical protein/hypothetical protein
RA	3,516,651	A→G	11.7%	intergenic (+648/‑487)	PP_5576 → / → PP_5578	hypothetical protein/hypothetical protein
RA	3,528,609	T→A	12.5%	L128Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,528,612	T→A	12.5%	L129Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,536,377	G→T	8.3%	intergenic (+48/‑29)	PP_3124 → / → PP_3125	short chain fatty acid transporter/Cro/CI family transcriptional regulator
RA	3,551,117	C→T	8.7%	Q76* (CAG→TAG) ‡	PP_3135 →	glycosyl transferase
RA	3,551,118	A→G	8.0%	Q76R (CAG→CGG) ‡	PP_3135 →	glycosyl transferase
RA	3,561,078	G→A	9.3%	A264T (GCC→ACC)	tdcG‑III →	L‑serine dehydratase
RA	3,563,208	A→G	9.9%	L220S (TTG→TCG)	PP_3146 ←	oxidoreductase
RA	3,573,693	G→T	8.9%	S565R (AGC→AGA)	PP_3155 ←	ferric siderophore receptor
RA	3,604,263	C→A	7.9%	G145V (GGC→GTC)	PP_3179 ←	LysR family transcriptional regulator
RA	3,615,341	C→A	8.1%	A174E (GCA→GAA)	PP_3186 →	transcriptional regulator
RA	3,633,829	C→G	13.4%	P62A (CCG→GCG)	PP_3202 →	transporter
RA	3,633,834	C→G	13.0%	R63R (CGC→CGG)	PP_3202 →	transporter
RA	3,638,290	A→T	8.1%	Q81H (CAA→CAT)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,644,600	C→T	9.1%	A117T (GCC→ACC)	PP_3211 ←	ABC transporter ATP‑binding protein
RA	3,644,991	C→T	15.1%	intergenic (‑43/+23)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,644,994	A→G	15.2%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,665,425	C→T	8.3%	A97V (GCA→GTA)	PP_3229 →	aliphatic sulfonate‑binding protein
RA	3,704,886	A→G	7.3%	L387L (TTG→CTG)	paaZ ←	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA	3,721,455	G→C	8.2%	G264G (GGC→GGG)	fnrC ←	Crp/Fnr family transcriptional regulator
RA	3,754,989	G→A	8.5%	L129L (TTG→TTA)	PP_3319 →	GGDEF domain‑containing sensory box protein
RA	3,755,655	C→T	6.4%	F351F (TTC→TTT)	PP_3319 →	GGDEF domain‑containing sensory box protein
RA	3,762,985	A→T	9.0%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,762,990	A→T	8.8%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,763,545	A→G	14.6%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,547	G→C	14.3%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,549	C→T	14.3%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,768,303	T→G	7.7%	L92R (CTG→CGG)	PP_5600 →	hypothetical protein
RA	3,791,448	C→G	9.8%	G283G (GGC→GGG)	PP_3353 →	sulfatase‑modifying protein
RA	3,791,453	C→G	9.8%	A285G (GCC→GGC)	PP_3353 →	sulfatase‑modifying protein
RA	3,812,702	A→G	11.1%	D328G (GAC→GGC)	PP_3368 →	MFS transporter
RA	3,812,705	T→A	10.9%	I329N (ATT→AAT)	PP_3368 →	MFS transporter
RA	3,812,708	C→T	11.0%	A330V (GCC→GTC)	PP_3368 →	MFS transporter
RA	3,816,546	A→T	6.2%	G106G (GGT→GGA)	cpxR ←	two‑component system regulator CpxR
RA	3,816,549	G→C	6.3%	P105P (CCC→CCG)	cpxR ←	two‑component system regulator CpxR
RA	3,816,552	A→T	6.2%	S104S (TCT→TCA)	cpxR ←	two‑component system regulator CpxR
RA	3,872,657	G→T	13.9%	intergenic (‑233/+75)	PP_3420 ← / ← PP_3421	sensor histidine kinase/sensor histidine kinase
RA	3,872,661	T→A	14.7%	intergenic (‑237/+71)	PP_3420 ← / ← PP_3421	sensor histidine kinase/sensor histidine kinase
RA	3,898,692	C→A	6.8%	R164L (CGC→CTC)	PP_3441 ←	hypothetical protein
RA	3,914,733	C→G	5.6%	R33P (CGG→CCG)	PP_3454 ←	transcriptional regulator
RA	3,921,241	G→C	6.6%	A190G (GCC→GGC)	acs ←	acyl‑CoA synthetase
RA	3,921,245	C→G	6.1%	E189Q (GAG→CAG)	acs ←	acyl‑CoA synthetase
RA	3,924,636	T→A	9.3%	E74D (GAA→GAT)	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,925,467	G→A	8.9%	G356G (GGC→GGT)	peaA ←	quinohemoprotein amine dehydrogenase subunit alpha
RA	3,941,121:1	+A	8.2%	coding (123/531 nt)	PP_3475 ←	type II secretion system pseudopilin PulG‑like signal peptide protein
RA	3,941,126	Δ1 bp	8.1%	coding (118/531 nt)	PP_3475 ←	type II secretion system pseudopilin PulG‑like signal peptide protein
RA	3,979,760	C→A	9.8%	Q305H (CAG→CAT)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,982,582	C→T	11.1%	C19C (TGC→TGT)	PP_3510 →	hypothetical protein
RA	4,000,085	C→T	6.8%	T242T (ACC→ACT)	PP_3528 →	ABC transporter substrate‑binding protein
RA	4,004,894	G→T	10.2%	W272C (TGG→TGT)	PP_3533 →	ornithine cyclodeaminase
RA	4,027,194	T→A	7.2%	D427V (GAC→GTC)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,049,951	A→G	23.7%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,954	C→G	27.3%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,957	C→T	27.3%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,080,963	A→T	16.9%	intergenic (‑143/+20)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,080,964	A→T	16.7%	intergenic (‑144/+19)	amaC ← / ← dpkA	D‑lysine aminotransferase/delta 1‑piperideine‑2‑carboxylate reductase
RA	4,091,493	A→C	7.8%	N20H (AAC→CAC)	garD →	galactarate dehydratase
RA	4,097,638	C→G	10.0%	G28R (GGG→CGG)	PP_3605 ←	LysR family transcriptional regulator
RA	4,151,977:1	+C	11.1%	intergenic (+123/+28)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,151,982	A→T	13.0%	intergenic (+128/+23)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,151,986	Δ1 bp	10.8%	intergenic (+132/+19)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,151,995	G→A	10.2%	intergenic (+141/+10)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,163,542	T→C	13.6%	intergenic (‑37/‑145)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,163,546	T→G	15.0%	intergenic (‑41/‑141)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,163,549	C→A	10.9%	intergenic (‑44/‑138)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,163,553	G→A	11.6%	intergenic (‑48/‑134)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,176,896	C→A	9.9%	Y511* (TAC→TAA)	PP_3676 →	hypothetical protein
RA	4,187,198	G→T	10.6%	L167L (CTG→CTT)	PP_3683 →	hypothetical protein
RA	4,245,021	G→T	18.6%	A15D (GCT→GAT)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,245,027	T→G	17.7%	D13A (GAC→GCC)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,245,030	C→A	19.9%	G12V (GGC→GTC)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,245,036	A→C	16.1%	I10S (ATC→AGC)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,256,787	A→T	6.9%	L55Q (CTG→CAG)	PP_3729 ←	amino acid‑binding protein‑like protein
RA	4,260,670	C→G	7.7%	R712R (CGG→CGC)	PP_3734 ←	ABC transporter permease
RA	4,260,675	C→G	7.9%	A711P (GCG→CCG)	PP_3734 ←	ABC transporter permease
RA	4,260,680	C→G	8.2%	G709A (GGC→GCC)	PP_3734 ←	ABC transporter permease
RA	4,301,102	A→G	8.4%	T75A (ACG→GCG)	PP_3774 →	hypothetical protein
RA	4,301,115	C→T	9.1%	A79V (GCC→GTC)	PP_3774 →	hypothetical protein
RA	4,316,686	C→T	7.5%	A242V (GCC→GTC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,707	T→A	8.4%	V249D (GTC→GAC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,712	A→G	7.9%	M251V (ATG→GTG)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,322,225	G→A	9.0%	intergenic (‑191/‑1232)	PP_3792 ← / → PP_5631	hypothetical protein/hypothetical protein
RA	4,335,984	G→T	10.2%	R122R (CGG→AGG)	PP_3810 ←	hypothetical protein
RA	4,338,447	T→C	8.9%	intergenic (+23/+119)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,448	G→A	8.9%	intergenic (+24/+118)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,348,749	A→G	58.4%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,353,340	C→G	15.8%	P141R (CCG→CGG)	yrpB →	2‑nitropropane dioxygenase
RA	4,353,932	C→T	8.8%	H338H (CAC→CAT)	yrpB →	2‑nitropropane dioxygenase
RA	4,353,933	A→G	8.8%	M339V (ATG→GTG)	yrpB →	2‑nitropropane dioxygenase
RA	4,370,069	T→A	7.8%	E54D (GAA→GAT)	ramA ←	(R)‑stereoselective amidase
RA	4,415,076	T→C	9.3%	intergenic (+141/+27)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,415,081	G→A	9.7%	intergenic (+146/+22)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,442,672	C→G	12.5%	intergenic (‑98/+40)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,442,673	C→G	12.5%	intergenic (‑99/+39)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,444,339	G→T	9.6%	R179R (CGC→CGA)	nicF ←	maleamate amidohydrolase
RA	4,444,344	C→G	8.2%	D178H (GAC→CAC)	nicF ←	maleamate amidohydrolase
RA	4,490,156	C→A	9.3%	L584F (TTG→TTT)	PP_3982 ←	hypothetical protein
RA	4,502,962:1	+T	13.9%	coding (547/1380 nt)	xanP →	xanthine permease
RA	4,502,968	Δ1 bp	13.5%	coding (553/1380 nt)	xanP →	xanthine permease
RA	4,505,094	C→A	8.1%	L52L (CTC→CTA)	tusE →	sulfur transfer protein
RA	4,530,069	T→A	14.7%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,070	T→A	15.2%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,553,312	A→T	7.8%	L553Q (CTG→CAG)	PP_4041 ←	glycoside hydrolase
RA	4,553,315	A→T	7.3%	L552Q (CTG→CAG)	PP_4041 ←	glycoside hydrolase
RA	4,556,306	C→T	8.5%	A79T (GCC→ACC)	zwfB ←	glucose 6‑phosphate 1‑dehydrogenase
RA	4,581,699	C→T	8.5%	L591L (CTG→CTA)	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,610,342	C→G	9.8%	I261M (ATC→ATG)	PP_4081 →	type IV/VI secretion system protein
RA	4,610,345	C→G	9.5%	A262A (GCC→GCG)	PP_4081 →	type IV/VI secretion system protein
RA	4,671,746	T→C	8.5%	L10P (CTC→CCC)	PP_4133 →	transcriptional regulator‑like protein
RA	4,689,015	G→A	7.5%	S290S (TCG→TCA)	PP_4149 →	ABC transporter permease
RA	4,731,020	T→C	10.5%	D157G (GAC→GGC)	lpdG ←	dihydrolipoyl dehydrogenase
RA	4,731,726	T→C	8.5%	N361D (AAT→GAT)	sucB ←	2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,731,727	G→A	8.3%	I360I (ATC→ATT)	sucB ←	2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,741,273:1	+C	79.5%	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	20.3%	intergenic (+465/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,275	A→G	79.9%	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	C→G	13.5%	intergenic (+467/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,277	C→T	86.9%	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,279	C→T	13.6%	intergenic (+470/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,280	C→T	86.4%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283	C→G	100%	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,285	2 bp→CT	100%	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298:1	+T	60.9%	intergenic (+489/+263)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,299	C→T	39.1%	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,301	A→C	39.1%	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,302	A→G	60.9%	intergenic (+493/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,304	C→G	38.9%	intergenic (+495/+257)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,305	Δ1 bp	60.9%	intergenic (+496/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,756,996	C→T	6.2%	A75V (GCC→GTC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,181	G→C	13.6%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,186	G→C	13.3%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,770,559	G→T	10.3%	T2918K (ACG→AAG)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,783,733	A→G	11.7%	L1209P (CTG→CCG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,736	C→T	10.0%	R1208Q (CGG→CAG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,744	A→G	10.2%	G1205G (GGT→GGC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,786,535	G→T	7.0%	S275Y (TCC→TAC) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,786,536	A→C	6.9%	S275A (TCC→GCC) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,787,439	A→G	9.3%	L2149P (CTG→CCG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,788,412	T→A	8.0%	M1825L (ATG→TTG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,792,573	C→T	8.7%	V438M (GTG→ATG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,806,160	A→T	11.9%	S593T (TCG→ACG)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,806,161	A→T	11.7%	R592R (CGT→CGA)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,811,491	C→T	8.0%	Q150* (CAG→TAG)	dsbG →	protein disulfide isomerase
RA	4,824,317	G→C	12.6%	S2306R (AGC→AGG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,830,389	A→G	12.8%	A282A (GCT→GCC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,830,392	C→T	13.0%	E281E (GAG→GAA)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,831,983	G→T	7.8%	K148N (AAG→AAT)	pvdS →	alternative sigma factor
RA	4,842,941	Δ1 bp	23.3%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,842,949:1	+G	25.0%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,843,918	C→A	8.3%	L241M (CTG→ATG) ‡	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,843,920	G→C	8.2%	L241L (CTG→CTC) ‡	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,843,922	T→G	8.1%	I242S (ATC→AGC)	PP_4259 →	iron‑sulfur cluster‑binding protein
RA	4,847,352	C→A	8.1%	A686D (GCT→GAT)	PP_4261 →	cation‑transporting P‑type ATPase
RA	4,848,642	G→T	7.1%	intergenic (+2/‑104)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,850,942	T→A	10.0%	F210I (TTC→ATC) ‡	fnrA →	DNA‑binding transcriptional dual regulator
RA	4,850,943	T→A	9.8%	F210Y (TTC→TAC) ‡	fnrA →	DNA‑binding transcriptional dual regulator
RA	4,866,068	G→T	10.6%	R171R (CGC→CGA)	PP_4277 ←	GntR family transcriptional regulator
RA	4,866,075	T→A	11.6%	D169V (GAC→GTC)	PP_4277 ←	GntR family transcriptional regulator
RA	4,866,082	A→C	14.6%	S167A (TCG→GCG)	PP_4277 ←	GntR family transcriptional regulator
RA	4,891,481	G→A	6.6%	V200M (GTG→ATG)	ttuD →	hydroxypyruvate reductase
RA	4,911,836	Δ1 bp	12.2%	coding (390/477 nt)	ccmH ←	cytochrome c heme lyase subunit
RA	4,911,840	C→G	12.8%	R129P (CGT→CCT)	ccmH ←	cytochrome c heme lyase subunit
RA	4,936,163	C→T	15.0%	D158N (GAC→AAC)	flhA ←	flagellar export pore protein
RA	4,951,017	T→G	29.1%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,951,018	C→A	25.3%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,958,639	T→G	10.2%	M36L (ATG→CTG)	fliG ←	flagellar motor switch protein
RA	4,958,644	C→T	8.2%	R34Q (CGG→CAG)	fliG ←	flagellar motor switch protein
RA	4,958,647	A→G	9.1%	L33P (CTG→CCG)	fliG ←	flagellar motor switch protein
RA	4,958,652	C→A	8.4%	Q31H (CAG→CAT)	fliG ←	flagellar motor switch protein
RA	4,970,038	T→G	11.4%	T84P (ACT→CCT)	fliC ←	flagellin
RA	4,976,252	A→C	13.1%	G188G (GGT→GGG)	flgJ ←	peptidoglycan hydrolase FlgJ
RA	4,976,257	C→G	14.8%	D187H (GAC→CAC)	flgJ ←	peptidoglycan hydrolase FlgJ
RA	4,982,722	G→A	35.1%	T3I (ACC→ATC)	flgD ←	flagellar basal‑body rod modification protein FlgD
RA	4,992,842	G→A	5.6%	A251T (GCC→ACC)	bkdAA →	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
RA	5,002,576	A→T	7.9%	I105F (ATT→TTT)	PP_4409 →	site‑specific recombinase
RA	5,029,037	C→T	11.1%	intergenic (+66/‑373)	PP_4432 → / → PP_4433	Xaa‑Pro aminopeptidase/amino acid MFS transporter
RA	5,029,042	A→G	12.1%	intergenic (+71/‑368)	PP_4432 → / → PP_4433	Xaa‑Pro aminopeptidase/amino acid MFS transporter
RA	5,041,297	T→A	9.0%	intergenic (+227/‑435)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,300	T→A	7.4%	intergenic (+230/‑432)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,059,548	Δ1 bp	7.8%	coding (1334/1581 nt)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,066,146	G→C	9.7%	Q165E (CAA→GAA)	PP_4463 ←	carbon‑nitrogen hydrolase family protein
RA	5,066,147	G→C	9.5%	F164L (TTC→TTG)	PP_4463 ←	carbon‑nitrogen hydrolase family protein
RA	5,079,235	C→A	11.4%	noncoding (42/77 nt)	PP_t56 ←	tRNA‑Arg
RA	5,080,326	A→T	9.8%	intergenic (‑143/+25)	csrA ← / ← lysC	carbon storage regulator/aspartokinase
RA	5,080,327	A→T	9.8%	intergenic (‑144/+24)	csrA ← / ← lysC	carbon storage regulator/aspartokinase
RA	5,092,790	C→A	11.3%	A294S (GCC→TCC)	PP_4482 ←	AraC family transcriptional regulator
RA	5,102,731	C→T	7.4%	intergenic (+11/‑29)	phhA → / → phhB	phenylalanine‑4‑hydroxylase/pterin‑4‑alpha‑carbinolamine dehydratase
RA	5,102,760	A→G	8.2%	M1M (ATG→GTG) †	phhB →	pterin‑4‑alpha‑carbinolamine dehydratase
RA	5,115,751	T→G	10.4%	H28P (CAC→CCC)	PP_4500 ←	TrpH family protein
RA	5,115,762	C→A	11.5%	R24R (CGG→CGT)	PP_4500 ←	TrpH family protein
RA	5,119,243	G→C	8.6%	L323L (CTG→CTC)	PP_4505 →	sensor histidine kinase
RA	5,119,244	G→C	8.5%	E324Q (GAG→CAG)	PP_4505 →	sensor histidine kinase
RA	5,147,557	T→A	7.3%	L205Q (CTG→CAG)	mscMB →	miniconductance mechanosensitive channel protein
RA	5,173,295	G→C	10.6%	intergenic (‑288/+44)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,296	G→C	10.5%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,173,299	G→A	10.2%	intergenic (‑292/+40)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,212,535	A→G	17.7%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,536	C→A	14.4%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,539	T→G	14.6%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,540	C→T	16.8%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,221,722	T→C	6.9%	V267A (GTC→GCC)	PP_4601 →	LysR family transcriptional regulator
RA	5,229,239	Δ1 bp	13.7%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,243	C→G	14.3%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,246	C→G	14.3%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,249:1	+C	14.3%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,230,081	G→C	11.6%	P61R (CCG→CGG) ‡	PP_4607 ←	transmembrane sensor
RA	5,230,082	G→C	11.6%	P61A (CCG→GCG) ‡	PP_4607 ←	transmembrane sensor
RA	5,232,102	C→G	11.3%	A214A (GCG→GCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,232,105	C→G	11.3%	P213P (CCG→CCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,239,932	G→A	10.4%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,239,937	T→C	8.6%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,253,931	G→A	8.5%	R251C (CGC→TGC)	PP_4630 ←	MerR family transcriptional regulator
RA	5,253,935	G→C	8.7%	F249L (TTC→TTG)	PP_4630 ←	MerR family transcriptional regulator
RA	5,253,939	T→C	8.7%	H248R (CAC→CGC)	PP_4630 ←	MerR family transcriptional regulator
RA	5,313,324	C→G	16.7%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,327	C→G	17.2%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,337,301	G→A	56.2%	G235R (GGG→AGG)	PP_4696 →	nitrogen regulation protein NR(I)
RA	5,344,515	C→G	14.5%	intergenic (+42/‑136)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,519	C→T	16.6%	intergenic (+46/‑132)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,528	A→G	12.8%	intergenic (+55/‑123)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,532	C→G	12.3%	intergenic (+59/‑119)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,537	Δ1 bp	11.5%	intergenic (+64/‑114)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,538	Δ1 bp	11.5%	intergenic (+65/‑113)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,361,119	A→T	8.0%	intergenic (‑78/+23)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,361,120	A→T	8.1%	intergenic (‑79/+22)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,362,263	C→G	11.5%	V49L (GTG→CTG)	tpiA ←	triose phosphate isomerase
RA	5,362,264	C→G	11.5%	Q48H (CAG→CAC)	tpiA ←	triose phosphate isomerase
RA	5,367,830	A→T	12.7%	K102* (AAG→TAG) ‡	PP_4720 →	RNA‑binding protein
RA	5,367,831	A→T	12.5%	K102M (AAG→ATG) ‡	PP_4720 →	RNA‑binding protein
RA	5,381,315	T→C	13.0%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,316	T→A	13.0%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,317	G→A	13.0%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,382,317	A→T	7.3%	E124D (GAA→GAT)	smpB →	SsrA‑binding protein
RA	5,382,318	A→T	7.3%	I125F (ATC→TTC)	smpB →	SsrA‑binding protein
RA	5,388,924	C→A	7.9%	L796M (CTG→ATG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,925	T→G	7.9%	L796R (CTG→CGG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,930	C→A	8.2%	L798M (CTG→ATG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,931	T→G	8.6%	L798R (CTG→CGG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,390,631	C→A	10.8%	intergenic (+672/‑50)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,633	C→G	13.0%	intergenic (+674/‑48)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,635	T→G	12.6%	intergenic (+676/‑46)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,427,625	G→C	9.8%	L176V (CTG→GTG)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,445,740	C→G	6.4%	S216R (AGC→AGG)	thiD →	phosphomethylpyrimidine kinase
RA	5,445,743	C→G	6.2%	A217A (GCC→GCG)	thiD →	phosphomethylpyrimidine kinase
RA	5,456,649:1	+G	8.2%	coding (333/2607 nt)	leuS →	leucine‑‑tRNA ligase
RA	5,456,653	A→T	8.3%	K113* (AAG→TAG) ‡	leuS →	leucine‑‑tRNA ligase
RA	5,456,654	A→T	8.3%	K113M (AAG→ATG) ‡	leuS →	leucine‑‑tRNA ligase
RA	5,456,659	Δ1 bp	8.9%	coding (343/2607 nt)	leuS →	leucine‑‑tRNA ligase
RA	5,458,940:1	+A	9.1%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,946	Δ1 bp	9.1%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,472,204	T→A	9.7%	K95M (AAG→ATG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,472,205	T→A	9.6%	K95* (AAG→TAG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,476,149	T→C	9.3%	Y111H (TAT→CAT)	PP_4813 →	PAP2 family protein/DedA family protein
RA	5,476,160	C→T	9.8%	A114A (GCC→GCT)	PP_4813 →	PAP2 family protein/DedA family protein
RA	5,520,930	G→T	8.5%	L302M (CTG→ATG)	lip ←	lipase
RA	5,559,538	C→T	10.9%	W337* (TGG→TAG) ‡	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,559,539	A→G	10.9%	W337R (TGG→CGG) ‡	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,560,671	T→C	9.9%	intergenic (‑124/+178)	hisZ ← / ← hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase
RA	5,566,464	T→A	10.6%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,467	T→A	10.6%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,567,008	C→G	13.5%	E177Q (GAA→CAA)	mutL ←	DNA mismatch repair protein MutL
RA	5,567,010	T→A	12.8%	Q176L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,567,012	C→G	12.6%	L175F (TTG→TTC)	mutL ←	DNA mismatch repair protein MutL
RA	5,572,293	C→T	10.7%	E175K (GAG→AAG)	orn ←	oligoribonuclease
RA	5,574,838:1	+T	11.8%	coding (507/1041 nt)	motB ←	flagellar motor rotation protein
RA	5,574,842	Δ1 bp	12.5%	coding (503/1041 nt)	motB ←	flagellar motor rotation protein
RA	5,575,949	A→G	7.9%	I84T (ATC→ACC)	motA ←	flagellar motor rotation protein
RA	5,610,332	G→A	9.2%	A78A (GCC→GCT)	PP_4929 ←	LysR family transcriptional regulator
JC	5,610,732	+CTGCTG	93.7%	coding (96/333 nt)	emrE →	small multidrug resistance protein
RA	5,614,754	A→C	7.9%	I273M (ATT→ATG)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,757	G→T	7.4%	A272A (GCC→GCA)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,618,492	G→A	8.9%	L71L (CTG→TTG)	wzy ←	O‑antigen polymerase
RA	5,638,161	G→C	8.2%	S215T (AGC→ACC)	PP_4949 →	TldD/PmbA family peptidase
RA	5,638,166	G→C	8.5%	V217L (GTG→CTG)	PP_4949 →	TldD/PmbA family peptidase
RA	5,641,139	G→C	6.1%	G251R (GGG→CGG)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,655,677:1	+A	25.7%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,682	T→G	28.6%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,687	C→A	29.4%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,692	Δ1 bp	25.0%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,800	C→T	7.3%	G649D (GGC→GAC)	tktA ←	transketolase A
RA	5,670,029	C→T	8.5%	A152V (GCC→GTC)	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,704,960	G→A	9.1%	P157S (CCA→TCA)	PP_5007 ←	polyhydroxyalkanoate granule‑associated protein GA2
RA	5,726,657	G→A	7.3%	P122L (CCG→CTG)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,743,407	A→C	8.5%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,750,454	C→T	10.0%	V389M (GTG→ATG)	thiI ←	tRNA sulfurtransferase
RA	5,750,455	A→G	10.0%	H388H (CAT→CAC)	thiI ←	tRNA sulfurtransferase
RA	5,793,308	G→A	9.5%	R27C (CGC→TGC)	gltD ←	glutamate synthase subunit beta
RA	5,796,178	C→T	7.7%	R593H (CGC→CAC)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,821,953	T→A	15.2%	L173Q (CTG→CAG)	metW →	methionine biosynthesis protein MetW
RA	5,834,371	A→G	10.8%	N198S (AAC→AGC)	PP_5113 →	Zn‑dependent peptidase
RA	5,846,019	G→A	13.5%	intergenic (+35/+56)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,846,028	T→C	20.5%	intergenic (+44/+47)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,846,033	C→T	15.4%	intergenic (+49/+42)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,846,239	T→C	15.5%	T217A (ACC→GCC)	mutM ←	formamidopyrimidine‑DNA glycosylase
RA	5,846,246	G→A	12.5%	G214G (GGC→GGT)	mutM ←	formamidopyrimidine‑DNA glycosylase
RA	5,858,026	T→A	10.1%	L173L (CTT→CTA)	PP_5134 →	hypothetical protein
RA	5,866,752	G→T	7.8%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,866,753	A→C	7.8%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,903,220	G→T	12.8%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,221	A→C	13.2%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,916,404	G→A	8.7%	A160V (GCA→GTA)	argE ←	acetylornithine deacetylase
RA	5,923,762	A→C	7.8%	L242R (CTG→CGG) ‡	gcvP‑II ←	glycine dehydrogenase
RA	5,923,763	G→T	8.6%	L242M (CTG→ATG) ‡	gcvP‑II ←	glycine dehydrogenase
RA	5,926,722	G→A	9.9%	A410V (GCG→GTG)	PP_5195 ←	iron ABC transporter permease
RA	5,948,738	T→A	18.9%	intergenic (‑63/+19)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,948,739	T→A	18.9%	intergenic (‑64/+18)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,960,051	A→T	7.8%	noncoding (74/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,960,052	A→T	7.7%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,988,865	G→A	14.7%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,875	T→C	18.5%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,880	C→T	20.0%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,881	G→T	18.2%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,882	C→T	20.0%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,885	A→G	20.3%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,891	G→C	19.1%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,893	C→G	18.5%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,896	C→T	18.3%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,900	C→G	19.3%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,904	C→T	19.1%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,906	C→T	18.8%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,945	C→A	29.9%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,950	C→T	29.9%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,951	A→G	30.6%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,961	T→C	37.3%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,967	Δ1 bp	35.6%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,995,682	C→T	7.7%	R469H (CGC→CAC)	PP_5252 ←	hypothetical protein
RA	6,000,005	G→A	9.0%	V162M (GTG→ATG)	PP_5256 →	cyclic nucleotide‑binding protein
RA	6,040,850	T→A	12.5%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,041,199	T→A	7.3%	N12I (AAT→ATT)	PP_5293 ←	hypothetical protein
RA	6,043,722	T→A	11.4%	intergenic (+18/+16)	gmk → / ← PP_5297	deoxyguanylate kinase/guanylate kinase/amino acid transporter
RA	6,052,930	A→C	8.7%	L198R (CTG→CGG) ‡	PP_5305 ←	epimerase/dehydratase‑like protein
RA	6,052,931	G→T	8.6%	L198M (CTG→ATG) ‡	PP_5305 ←	epimerase/dehydratase‑like protein
RA	6,070,587	A→G	100%	G38G (GGT→GGC)	PP_5324 ←	two‑component system response regulator
RA	6,072,960	G→A	11.7%	P451L (CCG→CTG)	PP_5327 ←	phosphate ABC transporter permease
RA	6,072,962	G→C	11.8%	S450R (AGC→AGG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,072,964	T→C	12.1%	S450G (AGC→GGC) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,081,044	T→A	16.7%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,081,045	T→A	16.6%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,082,692	A→C	11.1%	L133R (CTG→CGG)	purK ←	5‑(carboxyamino)imidazole ribonucleotide synthase
JC	6,098,315	Δ9 bp	100%	coding (822‑830/867 nt)	PP_5350 ←	RpiR family transcriptional regulator
RA	6,104,098	G→A	8.5%	intergenic (+20/‑94)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,109	T→A	10.7%	intergenic (+31/‑83)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,110	T→A	10.9%	intergenic (+32/‑82)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,121,743	A→G	8.5%	C155R (TGC→CGC)	PP_5371 ←	rubredoxin/rubredoxin reductase
RA	6,127,005	A→G	7.8%	intergenic (+40/+27)	PP_5374 → / ← PP_5375	choline/carnitine/betaine transporter family protein/LysR family transcriptional regulator
RA	6,127,705:1	+T	8.7%	coding (236/909 nt)	PP_5375 ←	LysR family transcriptional regulator
RA	6,127,712	Δ1 bp	8.7%	coding (229/909 nt)	PP_5375 ←	LysR family transcriptional regulator
RA	6,129,226	C→T	11.0%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,229	A→T	10.6%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,232	A→G	10.8%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,170,990	G→A	7.5%	T456T (ACC→ACT)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,171,410	C→A	8.7%	L316L (CTG→CTT)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,171,893	Δ1 bp	9.2%	coding (465/1836 nt)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,171,897:1	+C	9.7%	coding (461/1836 nt)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171328–176303	176303	1–4976	15 [14]	[14] 15	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176635–181701	181701	1–5067	16 [14]	[14] 15	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	4808203	4808218	16	16 [14]	[0] 35	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 94121	42 (0.970)	3 (0.070)	3/240	NT	6.5%	coding (418/897 nt)	trpI	HTH‑type transcriptional regulator TrpI
	?	NC_002947	= 94200	46 (1.120)					coding (497/897 nt)	trpI	HTH‑type transcriptional regulator TrpI
*	?	NC_002947	100443 =	51 (1.180)	4 (0.110)	4/220	NT	8.1%	intergenic (‑35/+87)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	100525 =	47 (1.250)					intergenic (‑117/+5)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	170160 =	46 (1.060)	4 (0.100)	4/246	NT	9.8%	coding (562/1221 nt)	PP_0159	family III CoA‑transferase
	?	NC_002947	170220 =	29 (0.690)					coding (622/1221 nt)	PP_0159	family III CoA‑transferase
*	?	NC_002947	171284 =	NA (NA)	4 (0.100)	4/242	NT	NA	intergenic (+465/‑105)	PP_0159/PP_16SA	family III CoA‑transferase/16S ribosomal RNA
	?	NC_002947	171337 =	NA (NA)					intergenic (+518/‑52)	PP_0159/PP_16SA	family III CoA‑transferase/16S ribosomal RNA
*	?	NC_002947	= 171434	NA (NA)	4 (0.100)	4/244	NT	NA	noncoding (46/1522 nt)	PP_16SA	16S ribosomal RNA
	?	NC_002947	= 171452	NA (NA)					noncoding (64/1522 nt)	PP_16SA	16S ribosomal RNA
*	?	NC_002947	= 174906	NA (NA)	4 (0.100)	4/244	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	200753 =	32 (0.740)	6 (0.150)	4/242	NT	13.3%	coding (6259/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	202753 =	48 (1.160)					coding (8259/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	259838 =	52 (1.200)	3 (0.070)	3/238	NT	6.6%	coding (1372/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	259875 =	36 (0.890)					intergenic (+2/‑14)	PP_0207/PP_0208	nitrate ABC transporter substrate‑binding protein/nitrate ABC transporter permease
*	?	NC_002947	275497 =	51 (1.180)	3 (0.070)	3/244	NT	5.6%	coding (451/1386 nt)	PP_0222	DszA family monooxygenase
	?	NC_002947	275525 =	52 (1.250)					coding (423/1386 nt)	PP_0222	DszA family monooxygenase
*	?	NC_002947	312718 =	45 (1.040)	5 (0.130)	4/226	NT	11.4%	coding (496/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	312774 =	38 (0.990)					coding (440/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	= 312731	45 (1.040)	4 (0.100)	4/226	NT	9.3%	coding (483/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312759	38 (0.990)					coding (455/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	= 336937	48 (1.110)	4 (0.090)	4/248	NT	8.0%	coding (817/1206 nt)	PP_0279	hypothetical protein
	?	NC_002947	= 336967	45 (1.060)					coding (787/1206 nt)	PP_0279	hypothetical protein
*	?	NC_002947	= 395980	32 (0.740)	8 (0.200)	8/236	NT	19.8%	intergenic (+159/+45)	fdhA/PP_0329	formaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	= 395987	35 (0.870)					intergenic (+166/+38)	fdhA/PP_0329	formaldehyde dehydrogenase/hypothetical protein
*	?	NC_002947	401300 =	16 (0.370)	10 (0.240)	4/246	NT	24.8%	coding (883/1059 nt)	PP_0334	transposase
	?	NC_002947	3969010 =	45 (1.070)					coding (1094/1179 nt)	PP_3498	transposase
*	?	NC_002947	= 401316	NA (NA)	3 (0.080)	3/228	NT	8.7%	coding (899/1059 nt)	PP_0334	transposase
	?	NC_002947	= 401372	35 (0.810)					coding (955/1059 nt)	PP_0334	transposase
*	?	NC_002947	478264 =	37 (0.850)	4 (0.120)	3/194	NT	15.9%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	14 (0.420)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	479162 =	43 (0.990)	4 (0.100)	4/244	NT	8.4%	coding (310/1107 nt)	cca	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	479206 =	46 (1.110)					coding (266/1107 nt)	cca	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	= 497685	55 (1.270)	4 (0.100)	4/244	NT	7.9%	coding (1554/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	= 497738	41 (0.990)					coding (1607/2388 nt)	PP_0409	two‑component system sensor histidine kinase
*	?	NC_002947	507013 =	53 (1.220)	4 (0.100)	4/226	NT	7.8%	intergenic (+22/+111)	trpE/estP	anthranilate synthase component 1/esterase EstP
	?	NC_002947	507103 =	48 (1.250)					intergenic (+112/+21)	trpE/estP	anthranilate synthase component 1/esterase EstP
*	?	NC_002947	= 611513	NA (NA)	4 (0.100)	4/240	NT	NA	coding (407/966 nt)	PP_0526	transposase
	?	NC_002947	= 611528	NA (NA)					coding (422/966 nt)	PP_0526	transposase
*	?	NC_002947	= 640405	41 (0.950)	4 (0.100)	4/234	NT	9.1%	coding (343/1929 nt)	PP_0551	MORN domain‑containing protein
	?	NC_002947	= 640429	42 (1.050)					coding (319/1929 nt)	PP_0551	MORN domain‑containing protein
*	?	NC_002947	= 652785	48 (1.110)	8 (0.220)	8/214	NT	28.4%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808204	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
*	?	NC_002947	= 660887	27 (0.620)	4 (0.100)	4/236	NT	11.4%	intergenic (+16/‑151)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
	?	NC_002947	= 660913	37 (0.920)					intergenic (+42/‑125)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
*	?	NC_002947	= 668084	33 (0.760)	6 (0.170)	6/206	NT	16.1%	intergenic (+45/+107)	yfhM/PP_0571	lipoprotein/membrane protein
	?	NC_002947	= 668153	36 (1.030)					intergenic (+114/+38)	yfhM/PP_0571	lipoprotein/membrane protein
*	?	NC_002947	709189 =	38 (0.880)	5 (0.120)	5/238	NT	12.1%	intergenic (+49/‑70)	murJ/ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
	?	NC_002947	709216 =	37 (0.910)					intergenic (+76/‑43)	murJ/ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
*	?	NC_002947	721258 =	15 (0.350)	12 (0.280)	11/248	NT	45.0%	intergenic (‑60/+47)	PP_0614/PP_0615	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase/ABC transporter ATP‑binding protein
	?	NC_002947	1298188 =	NA (NA)					intergenic (+41/+388)	PP_1133/PP_1134	transposase/hypothetical protein
*	?	NC_002947	= 721260	16 (0.370)	15 (0.350)	9/248	NT	49.0%	intergenic (‑62/+45)	PP_0614/PP_0615	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase/ABC transporter ATP‑binding protein
	?	NC_002947	3826654 =	NA (NA)					intergenic (‑566/+37)	ptxS/PP_3381	2‑ketogluconate utilization repressor/transposase
*	?	NC_002947	= 728713	28 (0.650)	6 (0.150)	5/240	NT	18.9%	coding (199/963 nt)	rluD	23S rRNA pseudouridine(1911/1915/1917) synthase
	?	NC_002947	= 728729	25 (0.610)					coding (215/963 nt)	rluD	23S rRNA pseudouridine(1911/1915/1917) synthase
*	?	NC_002947	= 730706	46 (1.060)	3 (0.070)	3/242	NT	6.2%	coding (243/2565 nt)	clpB	chaperone protein ClpB
	?	NC_002947	= 730725	47 (1.140)					coding (262/2565 nt)	clpB	chaperone protein ClpB
*	?	NC_002947	= 734332	69 (1.590)	4 (0.100)	4/232	NT	5.7%	coding (988/1296 nt)	ndh	NADH dehydrogenase
	?	NC_002947	= 734372	69 (1.750)					coding (948/1296 nt)	ndh	NADH dehydrogenase
*	?	NC_002947	741435 =	57 (1.320)	4 (0.100)	4/242	NT	6.9%	intergenic (+32/‑468)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	741486 =	NA (NA)					intergenic (+83/‑417)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
*	?	NC_002947	742918 =	NA (NA)	11 (0.270)	7/242	NT	NA	coding (1016/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742948 =	NA (NA)					coding (1046/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 743469	64 (1.480)	3 (0.080) +AGGCAGGTCTGATTTCGC	4/218	NT	5.2%	intergenic (+145/+129)	PP_0635/PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
	?	NC_002947	= 1431465	NA (NA)					intergenic (+74/+78)	PP_1252/PP_1253	group II intron‑encoding maturase/ArsR family transcriptional regulator
*	?	NC_002947	= 745621	NA (NA)	8 (0.190)	8/248	NT	NA	coding (881/1533 nt)	PP_0637	transposase
	?	NC_002947	= 745654	NA (NA)					coding (848/1533 nt)	PP_0637	transposase
*	?	NC_002947	= 786605	46 (1.060)	5 (0.130)	5/232	NT	9.9%	intergenic (+24/‑281)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	= 786691	49 (1.240)					intergenic (+110/‑195)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
*	?	NC_002947	= 823176	54 (1.250)	3 (0.080) +GGCACCGGCTCTGCCGGTG	3/216	NT	5.9%	coding (1431/1431 nt)	PP_0708	betaine‑aldehyde dehydrogenase
	?	NC_002947	1456002 =	59 (1.360)					intergenic (+74/+175)	PP_1273/PP_1274	multidrug MFS transporter outer membrane protein/short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	867919 =	42 (0.970)	8 (0.190)	7/248	NT	15.5%	intergenic (+14/+163)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	868017 =	46 (1.090)					intergenic (+112/+65)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	941673 =	39 (0.900)	7 (0.170)	5/238	NT	15.8%	coding (3952/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	941708 =	38 (0.940)					coding (3917/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 970218	48 (1.110)	3 (0.070)	3/246	NT	5.7%	coding (64/1116 nt)	tgt	queuine tRNA‑ribosyltransferase
	?	NC_002947	= 970261	53 (1.260)					coding (107/1116 nt)	tgt	queuine tRNA‑ribosyltransferase
*	?	NC_002947	995363 =	41 (0.950)	3 (0.070)	3/242	NT	7.2%	coding (2236/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
	?	NC_002947	995414 =	38 (0.920)					coding (2185/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
*	?	NC_002947	1025270 =	37 (0.850)	6 (0.180)	6/200	NT	21.4%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1025363 =	15 (0.440)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1037761 =	41 (0.950)	7 (0.170)	7/246	NT	13.5%	intergenic (+3/+113)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	1037865 =	50 (1.190)					intergenic (+107/+9)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
*	?	NC_002947	= 1054619	58 (1.340)	4 (0.090)	3/248	NT	6.9%	coding (1216/1332 nt)	PP_0913	hypothetical protein
	?	NC_002947	= 1054646	52 (1.230)					coding (1189/1332 nt)	PP_0913	hypothetical protein
*	?	NC_002947	1054646 =	53 (1.220)	3 (0.070)	3/246	NT	5.7%	coding (1189/1332 nt)	PP_0913	hypothetical protein
	?	NC_002947	1054696 =	48 (1.140)					coding (1139/1332 nt)	PP_0913	hypothetical protein
*	?	NC_002947	= 1126618	50 (1.150)	6 (0.170)	5/212	NT	11.5%	intergenic (‑67/+83)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	= 1126634	51 (1.410)					intergenic (‑83/+67)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
*	?	NC_002947	1167320 =	65 (1.500)	4 (0.100)	4/246	NT	6.9%	coding (258/729 nt)	pgl	6‑phosphogluconolactonase
	?	NC_002947	1167370 =	45 (1.070)					coding (308/729 nt)	pgl	6‑phosphogluconolactonase
*	?	NC_002947	1176938 =	53 (1.220)	3 (0.070)	3/238	NT	5.8%	coding (1363/1470 nt)	guaB	IMP dehydrogenase and single strand DNA binding factor
	?	NC_002947	1176967 =	48 (1.180)					coding (1392/1470 nt)	guaB	IMP dehydrogenase and single strand DNA binding factor
*	?	NC_002947	1197531 =	36 (0.830)	4 (0.090)	4/250	NT	9.9%	coding (1586/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
	?	NC_002947	1197561 =	37 (0.870)					coding (1616/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
*	?	NC_002947	1216187 =	47 (1.080)	4 (0.100)	4/238	NT	8.2%	coding (778/4305 nt)	PP_1061	ATP‑dependent DNA helicase
	?	NC_002947	1216232 =	45 (1.110)					coding (733/4305 nt)	PP_1061	ATP‑dependent DNA helicase
*	?	NC_002947	= 1229855	25 (0.580)	4 (0.100)	4/244	NT	14.3%	coding (3029/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
	?	NC_002947	= 1229862	24 (0.580)					coding (3036/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 1231348	52 (1.200)	3 (0.070)	3/252	NT	5.9%	coding (1371/1545 nt)	glpD	aerobic glycerol‑3‑phosphate dehydrogenase
	?	NC_002947	= 1231385	44 (1.020)					coding (1334/1545 nt)	glpD	aerobic glycerol‑3‑phosphate dehydrogenase
*	?	NC_002947	= 1246689	45 (1.040)	4 (0.110)	4/214	NT	8.5%	intergenic (+84/‑287)	PP_1087/argG	OmpA family outer membrane protein/argininosuccinate synthase
	?	NC_002947	= 1246715	48 (1.320)					intergenic (+110/‑261)	PP_1087/argG	OmpA family outer membrane protein/argininosuccinate synthase
*	?	NC_002947	1273319 =	31 (0.720)	3 (0.080) +GCAGGCGACGCGGT	3/226	NT	8.7%	intergenic (+104/+64)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	3028171 =	40 (0.920)					intergenic (+2/‑220)	PP_2642/pcaY	GntR family transcriptional regulator/aromatic acid chemoreceptor
*	?	NC_002947	1317119 =	59 (1.360)	7 (0.170)	5/240	NT	11.5%	coding (531/1989 nt)	PP_1150	membrane protein
	?	NC_002947	1317142 =	52 (1.270)					coding (554/1989 nt)	PP_1150	membrane protein
*	?	NC_002947	= 1320348	38 (0.880)	3 (0.070)	3/242	NT	7.3%	coding (2389/2586 nt)	PP_1154	sensory box protein
	?	NC_002947	= 1320381	40 (0.970)					coding (2356/2586 nt)	PP_1154	sensory box protein
*	?	NC_002947	= 1332458	38 (0.880)	4 (0.100)	4/236	NT	10.6%	intergenic (+33/‑1223)	PP_1157/PP_1159	acetolactate synthase/membrane protein
	?	NC_002947	= 1332481	32 (0.800)					intergenic (+56/‑1200)	PP_1157/PP_1159	acetolactate synthase/membrane protein
*	?	NC_002947	1357725 =	51 (1.180)	3 (0.070)	3/244	NT	5.8%	coding (900/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	1357766 =	49 (1.180)					coding (941/1608 nt)	PP_1182	sensor histidine kinase
*	?	NC_002947	1359309 =	51 (1.180)	4 (0.100)	4/240	NT	7.5%	coding (709/798 nt)	PP_1184	dienelactone hydrolase family protein
	?	NC_002947	1359350 =	50 (1.220)					coding (668/798 nt)	PP_1184	dienelactone hydrolase family protein
*	?	NC_002947	1419553 =	26 (0.600)	8 (0.250)	6/190	NT	39.6%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419647 =	5 (0.150)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1419697 =	21 (0.480)	3 (0.070)	3/240	NT	8.7%	coding (323/366 nt)	PP_1244	hypothetical protein
	?	NC_002947	1419800 =	43 (1.050)					coding (220/366 nt)	PP_1244	hypothetical protein
*	?	NC_002947	1443111 =	47 (1.080)	6 (0.170)	6/204	NT	16.7%	intergenic (‑42/+134)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
	?	NC_002947	1443179 =	22 (0.630)					intergenic (‑110/+66)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
*	?	NC_002947	= 1483154	35 (0.810)	4 (0.100)	4/246	NT	11.0%	coding (321/1029 nt)	yhdW	amino acid ABC transporter‑binding protein YhdW
	?	NC_002947	= 1483186	31 (0.740)					coding (353/1029 nt)	yhdW	amino acid ABC transporter‑binding protein YhdW
*	?	NC_002947	= 1486848	35 (0.810)	6 (0.140)	4/244	NT	14.5%	coding (622/765 nt)	yhdZ	amino acid ABC transporter ATP‑binding protein
	?	NC_002947	= 1486867	37 (0.890)					coding (641/765 nt)	yhdZ	amino acid ABC transporter ATP‑binding protein
*	?	NC_002947	1487013 =	9 (0.210)	5 (0.150)	5/194	NT	40.2%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487103 =	8 (0.240)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1487042	10 (0.230)	7 (0.210)	7/194	NT	47.3%	intergenic (+51/+79)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	= 1487072	8 (0.240)					intergenic (+81/+49)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1506420	49 (1.130)	3 (0.070)	3/244	NT	5.7%	coding (312/780 nt)	petC	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit
	?	NC_002947	= 1506462	52 (1.250)					coding (354/780 nt)	petC	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit
*	?	NC_002947	1531788 =	28 (0.650)	10 (0.290)	8/206	NT	35.3%	coding (130/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	1531884 =	14 (0.400)					coding (34/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	= 1537002	48 (1.110)	4 (0.100)	4/240	NT	7.8%	coding (596/633 nt)	PP_1347	glutathione S‑transferase family protein
	?	NC_002947	= 1537016	49 (1.200)					coding (610/633 nt)	PP_1347	glutathione S‑transferase family protein
*	?	NC_002947	= 1578527	22 (0.510)	3 (0.070)	3/244	NT	12.0%	coding (2912/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	= 1578551	23 (0.550)					coding (2888/3153 nt)	ttgB	efflux pump membrane protein TtgB
*	?	NC_002947	= 1684505	42 (0.970)	3 (0.070)	3/244	NT	7.5%	coding (1042/1107 nt)	PP_1478	xenobiotic reductase
	?	NC_002947	= 1684534	34 (0.820)					coding (1071/1107 nt)	PP_1478	xenobiotic reductase
*	?	NC_002947	= 1690686	39 (0.900)	3 (0.070)	3/238	NT	7.5%	coding (187/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein
	?	NC_002947	= 1690692	38 (0.940)					coding (181/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein
*	?	NC_002947	= 1731232	16 (0.370)	5 (0.150)	5/198	NT	26.0%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731268	16 (0.470)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	1765109 =	53 (1.220)	3 (0.070)	3/248	NT	5.2%	coding (232/471 nt)	PP_1574	hypothetical protein
	?	NC_002947	1765141 =	57 (1.350)					coding (264/471 nt)	PP_1574	hypothetical protein
*	?	NC_002947	1832840 =	48 (1.110)	3 (0.070)	3/244	NT	6.2%	coding (63/366 nt)	dgkA‑I	diacylglycerol kinase
	?	NC_002947	1832890 =	44 (1.060)					coding (113/366 nt)	dgkA‑I	diacylglycerol kinase
*	?	NC_002947	1838715 =	63 (1.450)	9 (0.220)	7/236	NT	15.1%	coding (496/606 nt)	PP_1644	NAD(P)H dehydrogenase
	?	NC_002947	1838752 =	43 (1.070)					coding (459/606 nt)	PP_1644	NAD(P)H dehydrogenase
*	?	NC_002947	1863032 =	51 (1.180)	4 (0.100)	4/246	NT	7.5%	coding (676/1068 nt)	PP_1666	hypothetical protein
	?	NC_002947	1863050 =	50 (1.190)					coding (694/1068 nt)	PP_1666	hypothetical protein
*	?	NC_002947	= 1885721	56 (1.290)	3 (0.070)	3/240	NT	5.5%	coding (346/1488 nt)	rmuC	DNA recombination limiting inversions protein
	?	NC_002947	= 1885747	51 (1.250)					coding (372/1488 nt)	rmuC	DNA recombination limiting inversions protein
*	?	NC_002947	1899260 =	68 (1.570)	7 (0.180)	7/224	NT	12.6%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899320 =	37 (0.970)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1906724 =	48 (1.110)	11 (0.320)	8/202	NT	26.5%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1906818 =	23 (0.670)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	= 1954184	43 (0.990)	3 (0.070)	3/246	NT	6.0%	coding (465/1494 nt)	PP_1752	hypothetical protein
	?	NC_002947	= 1954219	52 (1.240)					coding (500/1494 nt)	PP_1752	hypothetical protein
*	?	NC_002947	= 1961282	54 (1.250)	5 (0.120)	5/244	NT	8.9%	coding (94/600 nt)	PP_1759	hypothetical protein
	?	NC_002947	= 1961301	50 (1.200)					coding (113/600 nt)	PP_1759	hypothetical protein
*	?	NC_002947	1967188 =	23 (0.530)	4 (0.130)	4/188	NT	19.5%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967284 =	16 (0.500)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	= 2003635	19 (0.440)	3 (0.070)	3/242	NT	13.9%	coding (93/1011 nt)	PP_1787	hypothetical protein
	?	NC_002947	= 2003657	19 (0.460)					coding (115/1011 nt)	PP_1787	hypothetical protein
*	?	NC_002947	2032853 =	NA (NA)	3 (0.070)	3/242	NT	20.8%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2032878 =	12 (0.280)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
*	?	NC_002947	= 2048853	34 (0.780)	3 (0.080)	3/220	NT	9.9%	intergenic (+49/+90)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	= 2048910	25 (0.670)					intergenic (+106/+33)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2057866	42 (0.970)	5 (0.140)	4/206	NT	13.0%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2057906	33 (0.940)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	2100003 =	35 (0.810)	14 (0.400)	12/208	NT	40.8%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2100098 =	12 (0.340)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2131135 =	45 (1.040)	4 (0.100)	4/242	NT	8.3%	coding (1107/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2131175 =	45 (1.090)					coding (1067/2496 nt)	fimD	type I pili subunit FimD
*	?	NC_002947	2136209 =	30 (0.690)	6 (0.150)	6/242	NT	18.3%	coding (585/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase
	?	NC_002947	2136231 =	25 (0.610)					coding (563/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase
*	?	NC_002947	2158382 =	36 (0.830)	6 (0.140)	6/244	NT	14.2%	coding (689/741 nt)	fabG	3‑oxoacyl‑ACP reductase subunit
	?	NC_002947	2158422 =	38 (0.910)					coding (729/741 nt)	fabG	3‑oxoacyl‑ACP reductase subunit
*	?	NC_002947	2162588 =	49 (1.130)	5 (0.120)	5/242	NT	11.0%	intergenic (+227/‑595)	yceG/PP_5482	septation protein/hypothetical protein
	?	NC_002947	2162638 =	34 (0.820)					intergenic (+277/‑545)	yceG/PP_5482	septation protein/hypothetical protein
*	?	NC_002947	= 2248271	35 (0.810)	3 (0.070)	3/244	NT	7.2%	coding (1371/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
	?	NC_002947	= 2248318	44 (1.060)					coding (1324/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
*	?	NC_002947	2264043 =	61 (1.410)	7 (0.170)	7/242	NT	11.9%	intergenic (+172/‑51)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
	?	NC_002947	2264075 =	46 (1.110)					intergenic (+204/‑19)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
*	?	NC_002947	= 2273408	43 (0.990)	3 (0.070)	3/246	NT	6.5%	coding (1002/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	= 2273450	45 (1.070)					coding (960/1041 nt)	PP_2004	AraC family transcriptional regulator
*	?	NC_002947	2281445 =	45 (1.040)	3 (0.070)	3/240	NT	7.1%	coding (224/894 nt)	PP_2009	1‑aminocyclopropane‑1‑carboxylate deaminase
	?	NC_002947	2281500 =	36 (0.880)					coding (279/894 nt)	PP_2009	1‑aminocyclopropane‑1‑carboxylate deaminase
*	?	NC_002947	2282026 =	34 (0.780)	5 (0.120)	4/240	NT	12.5%	coding (805/894 nt)	PP_2009	1‑aminocyclopropane‑1‑carboxylate deaminase
	?	NC_002947	2282071 =	38 (0.930)					coding (850/894 nt)	PP_2009	1‑aminocyclopropane‑1‑carboxylate deaminase
*	?	NC_002947	2283665 =	49 (1.130)	6 (0.150)	5/242	NT	11.6%	coding (193/978 nt)	PP_2011	hypothetical protein
	?	NC_002947	2283716 =	45 (1.090)					coding (142/978 nt)	PP_2011	hypothetical protein
*	?	NC_002947	2310823 =	34 (0.780)	4 (0.100)	4/230	NT	10.8%	coding (531/1311 nt)	PP_2033	hypothetical protein
	?	NC_002947	2310888 =	35 (0.890)					coding (596/1311 nt)	PP_2033	hypothetical protein
*	?	NC_002947	2337360 =	46 (1.060)	5 (0.120)	5/236	NT	10.6%	coding (745/894 nt)	ybhD	DNA‑binding transcriptional regulator
	?	NC_002947	2337417 =	42 (1.040)					coding (688/894 nt)	ybhD	DNA‑binding transcriptional regulator
*	?	NC_002947	= 2443134	36 (0.830)	4 (0.100)	4/246	NT	10.3%	coding (2229/2610 nt)	topA	DNA topoisomerase I
	?	NC_002947	= 2443155	35 (0.830)					coding (2250/2610 nt)	topA	DNA topoisomerase I
*	?	NC_002947	2452851 =	56 (1.290)	3 (0.070)	3/240	NT	6.1%	coding (2311/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2452893 =	39 (0.950)					coding (2269/3450 nt)	mfd	transcription‑repair coupling factor
*	?	NC_002947	2475184 =	41 (0.950)	4 (0.100)	4/246	NT	9.1%	coding (61/927 nt)	tal	transaldolase
	?	NC_002947	2475204 =	40 (0.950)					coding (41/927 nt)	tal	transaldolase
*	?	NC_002947	= 2489095	47 (1.080)	6 (0.140)	6/246	NT	11.8%	coding (49/1578 nt)	PP_2184	formate dehydrogenase subunit beta
	?	NC_002947	= 2489113	44 (1.050)					coding (67/1578 nt)	PP_2184	formate dehydrogenase subunit beta
*	?	NC_002947	= 2530738	NA (NA)	5 (0.120)	4/238	NT	10.8%	intergenic (+114/‑67)	PP_2218/PP_2219	transposase/hypothetical protein
	?	NC_002947	4908043 =	44 (1.020)					coding (27/198 nt)	PP_4317	hypothetical protein
*	?	NC_002947	= 2588895	37 (0.850)	4 (0.100)	4/244	NT	10.5%	coding (2217/2559 nt)	PP_2266	DNA‑directed RNA polymerase
	?	NC_002947	= 2588913	33 (0.790)					coding (2235/2559 nt)	PP_2266	DNA‑directed RNA polymerase
*	?	NC_002947	= 2645464	27 (0.620)	3 (0.070)	3/236	NT	10.2%	coding (1893/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	= 2645496	28 (0.700)					coding (1861/2499 nt)	PP_2316	ABC transporter permease
*	?	NC_002947	2650744 =	39 (0.900)	3 (0.070)	3/242	NT	7.6%	intergenic (‑77/‑103)	PP_mr32/PP_2323	P14 ncRNA/hypothetical protein
	?	NC_002947	2650780 =	36 (0.870)					intergenic (‑113/‑67)	PP_mr32/PP_2323	P14 ncRNA/hypothetical protein
*	?	NC_002947	2683380 =	44 (1.020)	3 (0.080)	3/220	NT	7.5%	intergenic (+13/+100)	prpE/PP_2352	propionyl‑CoA synthetase/hypothetical protein
	?	NC_002947	2683465 =	36 (0.960)					intergenic (+98/+15)	prpE/PP_2352	propionyl‑CoA synthetase/hypothetical protein
*	?	NC_002947	= 2691928	30 (0.690)	4 (0.100)	4/230	NT	12.1%	coding (46/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2691938	31 (0.790)					coding (56/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
*	?	NC_002947	2719748 =	28 (0.650)	3 (0.070)	3/242	NT	9.7%	coding (51/609 nt)	PP_2379	cytochrome oxidase biogenesis protein
	?	NC_002947	2719779 =	29 (0.700)					coding (82/609 nt)	PP_2379	cytochrome oxidase biogenesis protein
*	?	NC_002947	= 2720805	39 (0.900)	3 (0.080)	5/234	NT	7.5%	intergenic (+16/+34)	PP_2380/PP_2381	hypothetical protein/hypothetical protein
	?	NC_002947	= 2720810	38 (0.950)					intergenic (+21/+29)	PP_2380/PP_2381	hypothetical protein/hypothetical protein
*	?	NC_002947	2731002 =	44 (1.020)	4 (0.100)	4/240	NT	9.8%	coding (296/2361 nt)	polB	DNA polymerase II
	?	NC_002947	2731040 =	32 (0.780)					coding (334/2361 nt)	polB	DNA polymerase II
*	?	NC_002947	2752749 =	52 (1.200)	3 (0.070)	3/246	NT	5.7%	coding (263/1215 nt)	czcB‑II	cobalt‑zinc‑cadmium resistance protein
	?	NC_002947	2752783 =	49 (1.170)					coding (297/1215 nt)	czcB‑II	cobalt‑zinc‑cadmium resistance protein
*	?	NC_002947	2762337 =	55 (1.270)	4 (0.100)	4/244	NT	6.8%	coding (601/789 nt)	PP_2416	iron ABC transporter ATP‑binding protein
	?	NC_002947	2762365 =	57 (1.370)					coding (573/789 nt)	PP_2416	iron ABC transporter ATP‑binding protein
*	?	NC_002947	= 2786795	27 (0.620)	3 (0.070)	3/236	NT	10.7%	intergenic (‑84/‑238)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
	?	NC_002947	= 2786823	25 (0.620)					intergenic (‑112/‑210)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
*	?	NC_002947	= 2789272	51 (1.180)	4 (0.090)	4/248	NT	7.1%	coding (1552/1563 nt)	ahpF	alkyl hydroperoxide reductase subunit F
	?	NC_002947	= 2789290	55 (1.300)					intergenic (+7/‑160)	ahpF/PP_2441	alkyl hydroperoxide reductase subunit F/hypothetical protein
*	?	NC_002947	= 2793794	12 (0.280)	6 (0.180)	5/198	NT	40.9%	intergenic (+60/+67)	PP_2445/PP_2446	membrane protein/hypothetical protein
	?	NC_002947	= 2793804	8 (0.240)					intergenic (+70/+57)	PP_2445/PP_2446	membrane protein/hypothetical protein
*	?	NC_002947	= 2852445	37 (0.850)	5 (0.120)	5/242	NT	11.9%	coding (930/1038 nt)	PP_2505	GAF domain/GGDEF domain‑containing protein
	?	NC_002947	= 2852454	39 (0.950)					coding (921/1038 nt)	PP_2505	GAF domain/GGDEF domain‑containing protein
*	?	NC_002947	2871116 =	34 (0.780)	4 (0.100)	4/242	NT	11.4%	intergenic (+380/‑150)	PP_2522/PP_2524	transposase/HD domain‑containing protein
	?	NC_002947	2871157 =	30 (0.730)					intergenic (+421/‑109)	PP_2522/PP_2524	transposase/HD domain‑containing protein
*	?	NC_002947	= 2895970	32 (0.740)	5 (0.120)	5/250	NT	13.4%	coding (97/714 nt)	PP_2550	transcriptional regulator
	?	NC_002947	= 2895991	33 (0.770)					coding (118/714 nt)	PP_2550	transcriptional regulator
*	?	NC_002947	2898241 =	38 (0.880)	4 (0.090)	4/250	NT	9.4%	coding (423/1413 nt)	PP_2552	DOPA decarboxylase
	?	NC_002947	2898266 =	40 (0.940)					coding (448/1413 nt)	PP_2552	DOPA decarboxylase
*	?	NC_002947	= 2981909	47 (1.080)	3 (0.070)	3/244	NT	5.9%	coding (499/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	= 2981934	51 (1.230)					coding (474/1734 nt)	PP_2607	hypothetical protein
*	?	NC_002947	= 2991583	40 (0.920)	10 (0.240)	9/240	NT	17.6%	intergenic (‑61/+14)	vgrG‑I/hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
	?	NC_002947	4611123 =	56 (1.370)					intergenic (+39/‑2068)	hcpC‑II/PP_4084	hemolysin‑coregulated protein/hypothetical protein
*	?	NC_002947	= 3082219	35 (0.810)	5 (0.120)	5/238	NT	12.2%	coding (339/1719 nt)	PP_2691	hypothetical protein
	?	NC_002947	= 3082250	39 (0.960)					coding (308/1719 nt)	PP_2691	hypothetical protein
*	?	NC_002947	3120793 =	41 (0.950)	5 (0.120)	5/244	NT	11.7%	coding (694/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3120810 =	36 (0.870)					coding (677/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	= 3121091	39 (0.900)	3 (0.070)	3/246	NT	7.2%	coding (396/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 3121106	39 (0.930)					coding (381/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	= 3127833	46 (1.060)	3 (0.070)	3/242	NT	7.1%	coding (627/897 nt)	PP_2745	universal stress protein family protein
	?	NC_002947	= 3127877	35 (0.850)					coding (583/897 nt)	PP_2745	universal stress protein family protein
*	?	NC_002947	= 3150122	36 (0.830)	4 (0.100)	4/234	NT	9.9%	coding (183/1131 nt)	PP_2766	long‑chain‑fatty acid‑‑CoA ligase‑like protein
	?	NC_002947	= 3150141	40 (1.000)					coding (202/1131 nt)	PP_2766	long‑chain‑fatty acid‑‑CoA ligase‑like protein
*	?	NC_002947	= 3152372	45 (1.040)	3 (0.070)	3/236	NT	6.3%	coding (484/882 nt)	PP_2768	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 3152388	48 (1.190)					coding (500/882 nt)	PP_2768	branched‑chain amino acid ABC transporter permease
*	?	NC_002947	3179966 =	36 (0.830)	5 (0.120)	5/244	NT	12.7%	coding (751/1953 nt)	PP_2790	sigma‑54 dependent sensory box protein
	?	NC_002947	3180013 =	34 (0.820)					coding (704/1953 nt)	PP_2790	sigma‑54 dependent sensory box protein
*	?	NC_002947	3251122 =	61 (1.410)	5 (0.120)	4/246	NT	8.4%	coding (464/546 nt)	ureJ	urease accessory protein UreJ
	?	NC_002947	3251156 =	50 (1.190)					coding (498/546 nt)	ureJ	urease accessory protein UreJ
*	?	NC_002947	3364786 =	29 (0.670)	4 (0.100)	4/240	NT	12.8%	coding (483/879 nt)	PP_2961	LysR family transcriptional regulator
	?	NC_002947	3364814 =	27 (0.660)					coding (455/879 nt)	PP_2961	LysR family transcriptional regulator
*	?	NC_002947	= 3390905	37 (0.850)	4 (0.100)	4/238	NT	10.6%	coding (72/1257 nt)	PP_2994	FMN‑binding oxidoreductase
	?	NC_002947	= 3390913	33 (0.810)					coding (80/1257 nt)	PP_2994	FMN‑binding oxidoreductase
*	?	NC_002947	3426005 =	38 (0.880)	3 (0.070)	3/244	NT	7.1%	coding (527/612 nt)	PP_3041	hypothetical protein
	?	NC_002947	3426046 =	42 (1.010)					coding (568/612 nt)	PP_3041	hypothetical protein
*	?	NC_002947	= 3427898	49 (1.130)	4 (0.100)	4/244	NT	8.2%	coding (1804/2037 nt)	PP_3042	terminase large subunit
	?	NC_002947	= 3427919	43 (1.030)					coding (1825/2037 nt)	PP_3042	terminase large subunit
*	?	NC_002947	3479798 =	53 (1.220)	6 (0.140)	4/244	NT	11.3%	coding (1464/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	3479817 =	43 (1.030)					coding (1445/2496 nt)	PP_3090	OmpA domain‑containing protein
*	?	NC_002947	3516639 =	38 (0.880)	3 (0.070)	6/244	NT	7.3%	intergenic (+636/‑499)	PP_5576/PP_5578	hypothetical protein/hypothetical protein
	?	NC_002947	3516657 =	40 (0.960)					intergenic (+654/‑481)	PP_5576/PP_5578	hypothetical protein/hypothetical protein
*	?	NC_002947	3532049 =	41 (0.950)	4 (0.100)	4/242	NT	9.4%	coding (224/762 nt)	yeaE	methylglyoxal reductase
	?	NC_002947	3532081 =	38 (0.920)					coding (192/762 nt)	yeaE	methylglyoxal reductase
*	?	NC_002947	= 3538258	16 (0.370)	4 (0.100)	4/238	NT	20.5%	coding (37/1116 nt)	PP_5587	hypothetical protein
	?	NC_002947	= 3538266	16 (0.390)					coding (45/1116 nt)	PP_5587	hypothetical protein
*	?	NC_002947	3619529 =	31 (0.720)	3 (0.070)	3/240	NT	8.9%	coding (867/948 nt)	PP_3190	ornithine cyclodeaminase/mu‑crystallin family protein
	?	NC_002947	3619568 =	32 (0.780)					coding (828/948 nt)	PP_3190	ornithine cyclodeaminase/mu‑crystallin family protein
*	?	NC_002947	= 3665255	53 (1.220)	3 (0.070)	3/250	NT	5.5%	coding (120/957 nt)	PP_3229	aliphatic sulfonate‑binding protein
	?	NC_002947	= 3665275	50 (1.170)					coding (140/957 nt)	PP_3229	aliphatic sulfonate‑binding protein
*	?	NC_002947	= 3708303	36 (0.830)	4 (0.100)	4/238	NT	9.3%	coding (614/1563 nt)	actP‑III	acetate permease
	?	NC_002947	= 3708336	44 (1.080)					coding (581/1563 nt)	actP‑III	acetate permease
*	?	NC_002947	3750171 =	52 (1.200)	3 (0.070)	3/240	NT	6.1%	coding (212/456 nt)	PP_3314	HSP20 family heat shock protein
	?	NC_002947	3750238 =	43 (1.050)					coding (145/456 nt)	PP_3314	HSP20 family heat shock protein
*	?	NC_002947	= 3758157	53 (1.220)	5 (0.120)	5/238	NT	9.5%	coding (427/1002 nt)	hemBB	porphobilinogen synthase
	?	NC_002947	= 3758179	46 (1.130)					coding (449/1002 nt)	hemBB	porphobilinogen synthase
*	?	NC_002947	3783067 =	50 (1.150)	3 (0.080)	3/234	NT	7.1%	coding (115/771 nt)	nikD	nickel ABC transporter ATP‑binding protein
	?	NC_002947	3783174 =	33 (0.830)					coding (222/771 nt)	nikD	nickel ABC transporter ATP‑binding protein
*	?	NC_002947	= 3793872	50 (1.150)	4 (0.100)	3/244	NT	7.9%	coding (694/1191 nt)	PP_3355	beta‑ketothiolase
	?	NC_002947	= 3793905	45 (1.080)					coding (661/1191 nt)	PP_3355	beta‑ketothiolase
*	?	NC_002947	= 3795181	30 (0.690)	3 (0.070)	3/246	NT	9.5%	coding (1316/1884 nt)	fcs	feruloyl‑CoA‑synthetase
	?	NC_002947	= 3795221	28 (0.670)					coding (1276/1884 nt)	fcs	feruloyl‑CoA‑synthetase
*	?	NC_002947	= 3835561	19 (0.440)	3 (0.070)	3/240	NT	12.3%	coding (6/879 nt)	PP_3387	hypothetical protein
	?	NC_002947	= 3835595	25 (0.610)					coding (40/879 nt)	PP_3387	hypothetical protein
*	?	NC_002947	3839257 =	27 (0.620)	2 (0.050)	4/240	NT	8.1%	coding (137/1158 nt)	PP_3389	membrane protein
	?	NC_002947	3839280 =	20 (0.490)					coding (160/1158 nt)	PP_3389	membrane protein
*	?	NC_002947	= 3915262	59 (1.360)	6 (0.140)	5/244	NT	9.3%	coding (187/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
	?	NC_002947	= 3915282	60 (1.440)					coding (207/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
*	?	NC_002947	3928383 =	51 (1.180)	7 (0.190)	7/220	NT	14.3%	intergenic (+15/‑125)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	3928464 =	40 (1.070)					intergenic (+96/‑44)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
*	?	NC_002947	= 3947984	18 (0.420)	3 (0.090)	3/198	NT	14.3%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3948013	22 (0.650)					coding (80/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	3960677 =	43 (0.990)	3 (0.070)	3/244	NT	6.6%	intergenic (‑249/‑80)	mnxG/PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
	?	NC_002947	3960711 =	43 (1.030)					intergenic (‑283/‑46)	mnxG/PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
*	?	NC_002947	3969629 =	NA (NA)	9 (0.220)	6/240	NT	NA	coding (220/321 nt)	PP_3499	transposase
	?	NC_002947	3969667 =	NA (NA)					coding (258/321 nt)	PP_3499	transposase
*	?	NC_002947	= 3989042	40 (0.920)	4 (0.100)	4/242	NT	9.6%	coding (1516/2085 nt)	oplA	5‑oxoprolinase A
	?	NC_002947	= 3989064	37 (0.900)					coding (1538/2085 nt)	oplA	5‑oxoprolinase A
*	?	NC_002947	4074001 =	NA (NA)	4 (0.100)	4/244	NT	18.8%	intergenic (‑495/+129)	mdtA/PP_3586	multidrug transporter membrane fusion protein/transposase
	?	NC_002947	4302589 =	18 (0.420)					intergenic (+1035/‑265)	PP_3774/PP_5627	hypothetical protein/hypothetical protein
*	?	NC_002947	4074198 =	NA (NA)	6 (0.140)	4/244	NT	NA	coding (1261/1329 nt)	PP_3586	transposase
	?	NC_002947	5223068 =	NA (NA)					coding (1277/1329 nt)	PP_4603	transposase
*	?	NC_002947	4116129 =	42 (0.970)	3 (0.070)	3/240	NT	7.6%	coding (501/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_002947	4116228 =	33 (0.810)					coding (402/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
*	?	NC_002947	= 4131154	71 (1.640)	7 (0.180)	6/234	NT	10.3%	intergenic (+22/+90)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
	?	NC_002947	= 4131216	56 (1.400)					intergenic (+84/+28)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
*	?	NC_002947	4159113 =	52 (1.200)	5 (0.130)	5/228	NT	11.0%	intergenic (+17/‑192)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4159201 =	34 (0.880)					intergenic (+105/‑104)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	4247312 =	43 (0.990)	4 (0.100)	4/246	NT	8.4%	coding (649/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	4247350 =	46 (1.100)					coding (611/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
*	?	NC_002947	= 4266591	54 (1.250)	6 (0.160)	6/220	NT	10.7%	intergenic (‑89/+57)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	= 4266628	53 (1.410)					intergenic (‑126/+20)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
*	?	NC_002947	4340085 =	11 (0.250)	8 (0.250)	6/186	NT	61.5%	intergenic (+26/‑305)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
	?	NC_002947	4340169 =	2 (0.060)					intergenic (+110/‑221)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
*	?	NC_002947	= 4340118	5 (0.120)	8 (0.250)	6/186	NT	73.9%	intergenic (+59/‑272)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
	?	NC_002947	= 4340134	2 (0.060)					intergenic (+75/‑256)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
*	?	NC_002947	= 4344193	41 (0.950)	4 (0.100)	4/242	NT	10.4%	coding (1029/1149 nt)	PP_3817	polyamine ABC transporter ATP‑binding protein
	?	NC_002947	= 4344219	30 (0.730)					coding (1055/1149 nt)	PP_3817	polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	= 4344345	26 (0.600)	6 (0.160)	5/216	NT	19.3%	intergenic (+32/‑124)	PP_3817/PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
	?	NC_002947	= 4344365	28 (0.760)					intergenic (+52/‑104)	PP_3817/PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
*	?	NC_002947	= 4345623	51 (1.180)	6 (0.140)	6/246	NT	11.2%	coding (1155/1308 nt)	PP_3818	phosphate‑binding protein
	?	NC_002947	= 4345670	46 (1.100)					coding (1202/1308 nt)	PP_3818	phosphate‑binding protein
*	?	NC_002947	= 4430876	31 (0.720)	4 (0.100)	4/240	NT	11.4%	coding (602/1068 nt)	PP_3925	hypothetical protein
	?	NC_002947	= 4430908	33 (0.810)					coding (634/1068 nt)	PP_3925	hypothetical protein
*	?	NC_002947	= 4558064	25 (0.580)	3 (0.070)	3/244	NT	11.1%	coding (136/267 nt)	PP_4045	hypothetical protein
	?	NC_002947	= 4558111	24 (0.580)					coding (89/267 nt)	PP_4045	hypothetical protein
*	?	NC_002947	4563456 =	24 (0.550)	3 (0.070)	3/238	NT	12.1%	coding (449/2316 nt)	vgrG‑III	type VI secretion system protein
	?	NC_002947	4563523 =	21 (0.520)					coding (382/2316 nt)	vgrG‑III	type VI secretion system protein
*	?	NC_002947	4586063 =	10 (0.230)	7 (0.230)	7/178	NT	50.0%	intergenic (+102/+115)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586167 =	7 (0.230)					intergenic (+206/+11)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4586100	9 (0.210)	7 (0.230)	7/178	NT	51.3%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	7 (0.230)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4590136	40 (0.920)	4 (0.100)	4/242	NT	9.1%	coding (772/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta
	?	NC_002947	= 4590151	42 (1.020)					coding (787/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta
*	?	NC_002947	4599018 =	47 (1.080)	7 (0.170)	6/244	NT	12.8%	coding (837/3627 nt)	PP_4071	membrane protein
	?	NC_002947	4599066 =	50 (1.200)					coding (789/3627 nt)	PP_4071	membrane protein
*	?	NC_002947	= 4599330	32 (0.740)	5 (0.120)	5/240	NT	13.5%	coding (525/3627 nt)	PP_4071	membrane protein
	?	NC_002947	= 4599354	34 (0.830)					coding (501/3627 nt)	PP_4071	membrane protein
*	?	NC_002947	= 4604060	23 (0.530)	8 (0.200)	8/240	NT	27.2%	intergenic (+1345/‑157)	PP_4074/PP_4076	hypothetical protein/hypothetical protein
	?	NC_002947	= 4604072	21 (0.510)					intergenic (+1357/‑145)	PP_4074/PP_4076	hypothetical protein/hypothetical protein
*	?	NC_002947	4647603 =	9 (0.210)	4 (0.130)	3/176	NT	27.4%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4647711 =	15 (0.500)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4647641	9 (0.210)	7 (0.230)	7/176	NT	39.8%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4647671	15 (0.500)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4697489	49 (1.130)	3 (0.070)	3/242	NT	5.4%	coding (594/696 nt)	kdpE	two‑component system DNA‑binding response regulator KdpE
	?	NC_002947	= 4697521	58 (1.410)					coding (562/696 nt)	kdpE	two‑component system DNA‑binding response regulator KdpE
*	?	NC_002947	= 4700803	51 (1.180)	3 (0.080)	3/226	NT	5.6%	intergenic (‑70/+80)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C
	?	NC_002947	= 4700847	55 (1.430)					intergenic (‑114/+36)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C
*	?	NC_002947	4788403 =	48 (1.110)	4 (0.100)	4/238	NT	7.9%	coding (5482/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	4788427 =	48 (1.180)					coding (5458/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	4793233 =	48 (1.110)	3 (0.070)	3/244	NT	6.5%	coding (652/6525 nt)	pvdI	non‑ribosomal peptide synthetase
	?	NC_002947	4793269 =	40 (0.960)					coding (616/6525 nt)	pvdI	non‑ribosomal peptide synthetase
*	?	NC_002947	4808219 =	0 (0.000)	20 (0.640)	18/184	NT	63.5%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988991	23 (0.740)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4830927 =	35 (0.810)	4 (0.090)	4/248	NT	9.5%	coding (308/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4830978 =	42 (0.990)					coding (257/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4848823	52 (1.200)	6 (0.140)	6/244	NT	10.7%	coding (78/1383 nt)	hemN	oxygen‑independent coproporphyrinogen III dehydrogenase
	?	NC_002947	= 4848848	50 (1.200)					coding (103/1383 nt)	hemN	oxygen‑independent coproporphyrinogen III dehydrogenase
*	?	NC_002947	4889614 =	50 (1.150)	3 (0.090)	3/200	NT	8.4%	intergenic (+15/‑138)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	4889705 =	26 (0.760)					intergenic (+106/‑47)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	4896423 =	33 (0.760)	7 (0.190)	6/212	NT	22.0%	intergenic (+11/‑197)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	4896512 =	22 (0.610)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4896443	33 (0.760)	6 (0.170)	4/212	NT	19.5%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896490	22 (0.610)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	4919071 =	47 (1.080)	6 (0.140)	4/244	NT	11.7%	coding (1425/1557 nt)	PP_4328	hypothetical protein
	?	NC_002947	4919103 =	45 (1.080)					coding (1457/1557 nt)	PP_4328	hypothetical protein
*	?	NC_002947	4929832 =	45 (1.040)	3 (0.080)	3/232	NT	6.5%	coding (385/2244 nt)	cheA	chemotaxis histidine kinase CheA
	?	NC_002947	4929912 =	45 (1.140)					coding (305/2244 nt)	cheA	chemotaxis histidine kinase CheA
*	?	NC_002947	4963796 =	43 (0.990)	3 (0.070)	3/240	NT	6.7%	intergenic (‑97/+131)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
	?	NC_002947	4963899 =	43 (1.050)					intergenic (‑200/+28)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
*	?	NC_002947	= 5030148	44 (1.020)	3 (0.070)	3/244	NT	6.9%	coding (739/1353 nt)	PP_4433	amino acid MFS transporter
	?	NC_002947	= 5030172	39 (0.940)					coding (763/1353 nt)	PP_4433	amino acid MFS transporter
*	?	NC_002947	5046227 =	32 (0.740)	3 (0.070)	3/242	NT	8.2%	coding (137/627 nt)	PP_4450	phosphoglycerate mutase family protein
	?	NC_002947	5046271 =	37 (0.900)					coding (181/627 nt)	PP_4450	phosphoglycerate mutase family protein
*	?	NC_002947	5059687 =	43 (0.990)	3 (0.070)	3/242	NT	7.1%	coding (1195/1581 nt)	PP_4458	opine ABC transporter substrate‑binding protein
	?	NC_002947	5059708 =	37 (0.900)					coding (1174/1581 nt)	PP_4458	opine ABC transporter substrate‑binding protein
*	?	NC_002947	5112607 =	44 (1.020)	3 (0.080)	3/210	NT	8.5%	intergenic (‑148/+118)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
	?	NC_002947	5112712 =	28 (0.780)					intergenic (‑253/+13)	rluB/PP_4497	23S rRNA pseudouridylate synthase B/hypothetical protein
*	?	NC_002947	= 5120200	48 (1.110)	4 (0.100)	4/244	NT	8.0%	coding (104/558 nt)	PP_4506	nitroreductase family protein
	?	NC_002947	= 5120242	46 (1.110)					coding (62/558 nt)	PP_4506	nitroreductase family protein
*	?	NC_002947	= 5153642	37 (0.850)	4 (0.100)	3/242	NT	10.1%	coding (619/876 nt)	PP_4537	membrane protein
	?	NC_002947	= 5153669	36 (0.870)					coding (592/876 nt)	PP_4537	membrane protein
*	?	NC_002947	5158456 =	43 (0.990)	3 (0.070)	3/246	NT	6.3%	coding (504/1833 nt)	PP_4542	ABC transporter ATP‑binding protein/permease
	?	NC_002947	5158532 =	47 (1.120)					coding (580/1833 nt)	PP_4542	ABC transporter ATP‑binding protein/permease
*	?	NC_002947	= 5162643	28 (0.650)	7 (0.200)	7/202	NT	19.1%	intergenic (+118/+83)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	= 5162675	37 (1.080)					intergenic (+150/+51)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5168706 =	65 (1.500)	4 (0.100)	4/244	NT	6.9%	coding (276/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	5168744 =	45 (1.080)					coding (314/1365 nt)	PP_4547	glutamine synthetase
*	?	NC_002947	= 5174387	39 (0.900)	3 (0.070)	3/240	NT	7.2%	coding (641/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	= 5174420	41 (1.000)					coding (608/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
*	?	NC_002947	5190385 =	27 (0.620)	5 (0.130)	5/234	NT	17.0%	intergenic (‑72/+102)	PP_4570/cysK	hypothetical protein/cysteine synthase A
	?	NC_002947	5190422 =	24 (0.600)					intergenic (‑109/+65)	PP_4570/cysK	hypothetical protein/cysteine synthase A
*	?	NC_002947	= 5190394	26 (0.600)	3 (0.080)	3/234	NT	11.1%	intergenic (‑81/+93)	PP_4570/cysK	hypothetical protein/cysteine synthase A
	?	NC_002947	= 5190411	24 (0.600)					intergenic (‑98/+76)	PP_4570/cysK	hypothetical protein/cysteine synthase A
*	?	NC_002947	= 5196165	47 (1.080)	3 (0.070)	3/238	NT	6.6%	coding (398/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	= 5196181	41 (1.010)					coding (382/690 nt)	ybgJ	allophanate hydrolase subunit 1
*	?	NC_002947	5196431 =	50 (1.150)	4 (0.100)	3/234	NT	8.2%	coding (132/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	5196476 =	43 (1.080)					coding (87/690 nt)	ybgJ	allophanate hydrolase subunit 1
*	?	NC_002947	5201627 =	4 (0.090)	9 (0.290)	5/180	NT	64.7%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5201722 =	7 (0.230)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	= 5201663	4 (0.090)	6 (0.200)	5/180	NT	55.0%	intergenic (‑101/‑79)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	= 5201684	7 (0.230)					intergenic (‑122/‑58)	PP_4582/PP_4583	membrane protein/putative Peptidase
*	?	NC_002947	= 5205221	46 (1.060)	5 (0.120)	5/246	NT	10.8%	intergenic (+64/+51)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein
	?	NC_002947	= 5205267	38 (0.910)					intergenic (+110/+5)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein
*	?	NC_002947	= 5241748	61 (1.410)	5 (0.120)	5/244	NT	8.4%	coding (172/633 nt)	hmgC	maleylacetoacetate isomerase
	?	NC_002947	= 5241781	51 (1.230)					coding (139/633 nt)	hmgC	maleylacetoacetate isomerase
*	?	NC_002947	= 5254003	48 (1.110)	3 (0.070)	3/242	NT	6.0%	coding (679/912 nt)	PP_4630	MerR family transcriptional regulator
	?	NC_002947	= 5254030	48 (1.160)					coding (652/912 nt)	PP_4630	MerR family transcriptional regulator
*	?	NC_002947	= 5288471	14 (0.320)	5 (0.150)	5/194	NT	30.6%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5288505	12 (0.360)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	5299581 =	47 (1.080)	4 (0.100)	4/238	NT	8.1%	coding (569/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
	?	NC_002947	5299642 =	47 (1.160)					coding (508/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
*	?	NC_002947	= 5321962	42 (0.970)	3 (0.070)	3/236	NT	6.5%	coding (1338/2322 nt)	mrcB	transglycosylase/transpeptidase
	?	NC_002947	= 5322044	47 (1.170)					coding (1256/2322 nt)	mrcB	transglycosylase/transpeptidase
*	?	NC_002947	= 5350530	29 (0.670)	7 (0.170)	6/242	NT	17.8%	intergenic (+19/+63)	PP_4704/PP_4705	hypothetical protein/glyoxalase
	?	NC_002947	= 5350559	37 (0.900)					intergenic (+48/+34)	PP_4704/PP_4705	hypothetical protein/glyoxalase
*	?	NC_002947	5382446 =	19 (0.440)	3 (0.100)	3/184	NT	20.9%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5382544 =	9 (0.290)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
*	?	NC_002947	5385527 =	43 (0.990)	5 (0.130)	4/234	NT	11.7%	coding (210/1146 nt)	lldD	L‑lactate dehydrogenase
	?	NC_002947	5385567 =	36 (0.900)					coding (250/1146 nt)	lldD	L‑lactate dehydrogenase
*	?	NC_002947	= 5418129	34 (0.780)	3 (0.070)	3/238	NT	8.2%	coding (990/1368 nt)	PP_4758	MFS transporter
	?	NC_002947	= 5418145	35 (0.860)					coding (974/1368 nt)	PP_4758	MFS transporter
*	?	NC_002947	= 5422838	46 (1.060)	4 (0.100)	4/240	NT	8.6%	intergenic (‑71/+79)	tesB/PP_4763	acyl‑CoA thioesterase II/acetyltransferase
	?	NC_002947	= 5422854	42 (1.030)					intergenic (‑87/+63)	tesB/PP_4763	acyl‑CoA thioesterase II/acetyltransferase
*	?	NC_002947	5437823 =	40 (0.920)	4 (0.100)	4/244	NT	9.7%	noncoding (123/254 nt)	PP_mr57	P24 ncRNA
	?	NC_002947	5437849 =	36 (0.870)					noncoding (97/254 nt)	PP_mr57	P24 ncRNA
*	?	NC_002947	= 5454666	NA (NA)	3 (0.070)	3/244	NT	8.9%	coding (1277/1329 nt)	PP_4791	transposase
	?	NC_002947	= 5552936	32 (0.740)					intergenic (+551/+110)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein
*	?	NC_002947	5456645 =	39 (0.900)	2 (0.050)	4/244	NT	5.0%	coding (329/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	5456664 =	38 (0.910)					coding (348/2607 nt)	leuS	leucine‑‑tRNA ligase
*	?	NC_002947	5492350 =	37 (0.850)	3 (0.070)	3/236	NT	8.8%	intergenic (‑103/+16)	PP_5716/cobJ	hypothetical protein/precorrin‑3B C17‑methyltransferase
	?	NC_002947	5492394 =	28 (0.700)					coding (1670/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
*	?	NC_002947	5496854 =	47 (1.080)	7 (0.170)	6/246	NT	11.7%	intergenic (‑122/‑122)	cobG/cobL	precorrin‑3B synthase/precorrin‑6Y C(5,15)‑methyltransferase
	?	NC_002947	5496938 =	60 (1.430)					intergenic (‑206/‑38)	cobG/cobL	precorrin‑3B synthase/precorrin‑6Y C(5,15)‑methyltransferase
*	?	NC_002947	= 5513315	46 (1.060)	5 (0.150)	5/202	NT	11.3%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5513371	42 (1.220)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	5537079 =	28 (0.650)	7 (0.210)	5/200	NT	22.6%	intergenic (+8/+95)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
	?	NC_002947	5537155 =	26 (0.760)					intergenic (+84/+19)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
*	?	NC_002947	= 5537105	28 (0.650)	11 (0.320)	9/200	NT	31.4%	intergenic (+34/+69)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
	?	NC_002947	= 5537127	26 (0.760)					intergenic (+56/+47)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
*	?	NC_002947	= 5601914	46 (1.060)	3 (0.070)	3/242	NT	6.0%	coding (1619/5418 nt)	PP_4924	subtilase family serine protease
	?	NC_002947	= 5601962	50 (1.210)					coding (1571/5418 nt)	PP_4924	subtilase family serine protease
*	?	NC_002947	= 5634754	45 (1.040)	4 (0.100)	4/242	NT	8.5%	intergenic (+279/+104)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
	?	NC_002947	= 5634797	43 (1.040)					intergenic (+322/+61)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
*	?	NC_002947	5644175 =	33 (0.760)	3 (0.070)	3/246	NT	9.4%	coding (787/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase
	?	NC_002947	5644213 =	26 (0.620)					coding (825/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase
*	?	NC_002947	5646682 =	57 (1.320)	3 (0.070)	3/246	NT	5.7%	coding (1984/2184 nt)	PP_4954	membrane protein
	?	NC_002947	5646714 =	45 (1.070)					coding (2016/2184 nt)	PP_4954	membrane protein
*	?	NC_002947	= 5668826	33 (0.760)	6 (0.140)	4/248	NT	16.4%	coding (771/1395 nt)	ahcY	adenosylhomocysteinase
	?	NC_002947	= 5668852	29 (0.690)					coding (797/1395 nt)	ahcY	adenosylhomocysteinase
*	?	NC_002947	= 5681340	47 (1.080)	4 (0.090)	5/248	NT	8.1%	intergenic (‑6/+202)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
	?	NC_002947	= 5681363	45 (1.060)					intergenic (‑29/+179)	PP_4986/PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
*	?	NC_002947	= 5692795	53 (1.220)	5 (0.120)	5/244	NT	8.8%	coding (39/570 nt)	PP_4995	exopolysaccharide biosynthesis protein
	?	NC_002947	= 5692824	53 (1.270)					coding (68/570 nt)	PP_4995	exopolysaccharide biosynthesis protein
*	?	NC_002947	= 5698799	41 (0.950)	8 (0.210)	6/220	NT	15.9%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5698848	49 (1.310)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	5706735 =	44 (1.020)	3 (0.070)	3/244	NT	6.4%	coding (697/4761 nt)	PP_5009	hypothetical protein
	?	NC_002947	5706777 =	45 (1.080)					coding (739/4761 nt)	PP_5009	hypothetical protein
*	?	NC_002947	5714220 =	66 (1.520)	5 (0.120)	5/244	NT	6.7%	coding (1613/1623 nt)	ubiB	2‑octaprenylphenol hydroxylase
	?	NC_002947	5714263 =	76 (1.830)					intergenic (+33/‑40)	ubiB/hisI	2‑octaprenylphenol hydroxylase/phosphoribosyl‑AMP cyclohydrolase
*	?	NC_002947	5731921 =	49 (1.130)	6 (0.150)	5/240	NT	11.7%	coding (691/1206 nt)	hutI	imidazolonepropionase
	?	NC_002947	5731965 =	44 (1.080)					coding (647/1206 nt)	hutI	imidazolonepropionase
*	?	NC_002947	5743392 =	49 (1.130)	8 (0.210)	6/228	NT	15.4%	intergenic (‑169/+78)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	5743446 =	44 (1.130)					intergenic (‑223/+24)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
*	?	NC_002947	5756714 =	58 (1.340)	4 (0.100)	4/236	NT	6.8%	intergenic (+335/‑353)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
	?	NC_002947	5756788 =	56 (1.390)					intergenic (+409/‑279)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
*	?	NC_002947	= 5759458	25 (0.580)	7 (0.160)	6/252	NT	25.5%	intergenic (+11/+145)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759552	16 (0.370)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	5759460 =	25 (0.580)	5 (0.150)	4/190	NT	23.4%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5759552 =	14 (0.430)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	5779815 =	31 (0.720)	3 (0.070)	3/244	NT	8.6%	coding (63/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	5779855 =	34 (0.820)					coding (103/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
*	?	NC_002947	5786528 =	33 (0.760)	4 (0.110)	3/206	NT	13.0%	intergenic (+15/‑116)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5786613 =	27 (0.770)					intergenic (+100/‑31)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5786551	32 (0.740)	4 (0.110)	4/206	NT	13.1%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5786588	27 (0.770)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	5791892 =	44 (1.020)	3 (0.080)	3/226	NT	6.7%	intergenic (‑119/+76)	hemE/gltD	uroporphyrinogen decarboxylase/glutamate synthase subunit beta
	?	NC_002947	5791957 =	45 (1.170)					intergenic (‑184/+11)	hemE/gltD	uroporphyrinogen decarboxylase/glutamate synthase subunit beta
*	?	NC_002947	= 5796767	43 (0.990)	6 (0.150)	6/242	NT	12.4%	coding (1189/4446 nt)	gltB	L‑glutamate synthase subunit alpha
	?	NC_002947	= 5796785	44 (1.070)					coding (1171/4446 nt)	gltB	L‑glutamate synthase subunit alpha
*	?	NC_002947	= 5802257	40 (0.920)	4 (0.100)	4/240	NT	8.7%	coding (633/1239 nt)	pilQ	type IV pili biogenesis protein
	?	NC_002947	= 5802273	46 (1.120)					coding (617/1239 nt)	pilQ	type IV pili biogenesis protein
*	?	NC_002947	= 5816927	33 (0.760)	8 (0.220)	5/218	NT	20.7%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816954	33 (0.890)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5856870 =	57 (1.320)	5 (0.120)	5/246	NT	8.3%	coding (741/1392 nt)	PP_5133	membrane protein
	?	NC_002947	5856915 =	56 (1.340)					coding (786/1392 nt)	PP_5133	membrane protein
*	?	NC_002947	5877040 =	57 (1.320)	5 (0.140)	5/206	NT	10.6%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877122 =	38 (1.080)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	= 5903810	54 (1.250)	6 (0.150)	6/240	NT	10.6%	intergenic (+10/+97)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903965	50 (1.220)					coding (836/894 nt)	spuH	spermidine/putrescine ABC transporter permease
*	?	NC_002947	= 5903825	62 (1.430)	7 (0.180)	7/234	NT	11.8%	intergenic (+25/+82)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903887	48 (1.200)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	5914213 =	29 (0.670)	7 (0.210)	6/198	NT	36.3%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5914309 =	2 (0.060)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 6006630	15 (0.350)	9 (0.290)	5/182	NT	39.4%	intergenic (+42/+57)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
	?	NC_002947	= 6006642	17 (0.550)					intergenic (+54/+45)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
*	?	NC_002947	= 6019326	42 (0.970)	3 (0.080)	3/208	NT	7.4%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6019356	41 (1.160)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	6045574 =	53 (1.220)	5 (0.120)	5/248	NT	9.2%	coding (593/768 nt)	PP_5298	glutamine amidotransferase
	?	NC_002947	6045623 =	47 (1.110)					coding (544/768 nt)	PP_5298	glutamine amidotransferase
*	?	NC_002947	6060487 =	41 (0.950)	6 (0.160)	4/226	NT	15.1%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060574 =	31 (0.810)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6136887	37 (0.850)	4 (0.100)	4/234	NT	10.2%	coding (1172/1410 nt)	copS	copper sensor protein
	?	NC_002947	= 6136925	36 (0.900)					coding (1210/1410 nt)	copS	copper sensor protein