mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 1,648,886 | Δ12 bp | intergenic (‑123/+162) | oprB‑II ← / ← PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| MC JC | 1,738,046 | Δ39,415 bp | [yffB]–PP_5476 | 59 genes [yffB], PP_1532, PP_1533, PP_1534, PP_1535, PP_1536, PP_1537, PP_5472, PP_1538, PP_1539, PP_1540, PP_1541, PP_1542, PP_1543, PP_1544, PP_1545, PP_1546, PP_5473, PP_5474, PP_1548, PP_5744, PP_1549, PP_1550, PP_1551, PP_1552, PP_1553, PP_1554, PP_1555, PP_1556, PP_1557, PP_1558, PP_1559, PP_1560, PP_1561, PP_1562, PP_1563, PP_1564, PP_1565, PP_1566, PP_1567, PP_1568, PP_1569, PP_1570, PP_1571, PP_1572, PP_1573, PP_1574, PP_1575, PP_1576, PP_1577, PP_1578, PP_5475, PP_1579, PP_1580, PP_1581, PP_1582, PP_1583, PP_1584, PP_5476 |
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| RA | 1,851,762 | C→T | S269L (TCG→TTG) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,964,640 | G→A | Q255* (CAG→TAG) | fleQ ← | transcriptional regulator FleQ |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 176399 | NA (NA) | 49 (0.700) +CGAAA |
25/252 | 2.4 | 34.0% | intergenic (+43/‑420) | PP_5SA/PP_16SB | 5S ribosomal RNA/16S ribosomal RNA |
| ? | NC_002947 | = 182013 | 99 (1.350) | intergenic (+2/+63) | PP_5SB/PP_0160 | 5S ribosomal RNA/ferrioxamine receptor | |||||
| * | ? | NC_002947 | 337784 = | 95 (1.300) | 18 (0.310) | 17/206 | 2.9 | 23.9% | intergenic (‑31/+98) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| ? | NC_002947 | 337868 = | 40 (0.700) | intergenic (‑115/+14) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease | |||||
| * | ? | NC_002947 | 4808219 = | 1 (0.010) | 43 (0.810) | 30/192 | 0.9 | 66.3% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988991 | 43 (0.810) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 5506637 | 87 (1.190) | 27 (0.480) | 19/204 | 2.5 | 26.8% | intergenic (+48/‑151) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease |
| ? | NC_002947 | = 5506650 | 80 (1.410) | intergenic (+61/‑138) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease | |||||
| * | ? | NC_002947 | 6009165 = | 44 (0.600) | 19 (0.350) | 17/196 | 2.7 | 45.3% | intergenic (+6/+76) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| ? | NC_002947 | 6009242 = | 13 (0.240) | coding (1667/1668 nt) | PP_5263 | GGDEF domain‑containing protein | |||||