| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,309,793:1 | +G | 5.6% | coding (76/1032 nt) | yfiZ_2 ← | putative siderophore transport system permease protein YfiZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,309,793 | 1 | . | G | 5.6% | 1261.7 / 71.1 | 268 | coding (76/1032 nt) | yfiZ_2 | putative siderophore transport system permease protein YfiZ |
| Reads supporting (aligned to +/- strand): ref base . (135/118); new base G (6/9); total (141/127) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.39e-01 | |||||||||||
Only 100 of 297 total aligned reads displayed.
TAACATAGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAC > USA300TCH1516_ALE/2309703‑2309883 | tAACATAGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAc < 2:1699588/91‑1 (MQ=255)tAACATAGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAc < 1:1600599/91‑1 (MQ=255) aaCATAGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑t > 2:1652557/1‑91 (MQ=255) cATAGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAT‑ACTCAC‑tat > 2:2863438/1‑91 (MQ=255) tAGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑tatat > 1:3714157/1‑91 (MQ=255) tAGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑tatat > 2:4161498/1‑91 (MQ=255) aGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑tatata > 2:3706160/1‑91 (MQ=255) aGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑tatata > 2:2388044/1‑91 (MQ=255) gTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATAc > 1:1169564/1‑91 (MQ=255) gTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATAc > 1:4959238/1‑91 (MQ=255) gTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATAc < 1:4471539/91‑1 (MQ=255) gAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGt < 1:4540576/91‑1 (MQ=255) gAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGt > 2:3100746/1‑91 (MQ=255) gAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGt < 2:251121/91‑1 (MQ=255) aTGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGa > 1:4532113/1‑91 (MQ=255) gATATCGCTAGAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATGAAAAGAAAGCACAACACTCACGTATATA‑GTGAg < 1:5632191/91‑1 (MQ=37) gATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATAAACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAgt < 2:1565338/91‑1 (MQ=21) tatCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAgtgt < 1:3663899/91‑1 (MQ=255) tatCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAgtgt > 2:5506875/1‑91 (MQ=255) tCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttg < 2:4457222/91‑1 (MQ=255) cGCTAACATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGcgttgt > 2:340945/1‑91 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑Ttgtg < 1:3504933/91‑1 (MQ=25) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg > 1:2113409/1‑91 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg > 2:495725/1‑91 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg < 1:4654348/91‑1 (MQ=255) cTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGct < 1:5298333/91‑2 (MQ=17) aaaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGt > 1:5398358/1‑91 (MQ=255) aattaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtct < 2:593095/91‑1 (MQ=255) aattaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtct < 1:4370027/91‑1 (MQ=255) attaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctt > 1:1887306/1‑91 (MQ=255) ttaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtcttt < 2:1228664/91‑1 (MQ=255) cttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGCGTGTTGTTAGtctttttt > 2:2138588/2‑90 (MQ=255) attTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttc > 1:1070597/1‑91 (MQ=255) ttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttct < 1:4233092/91‑1 (MQ=255) ttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttcttt > 1:610230/1‑91 (MQ=255) tCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttctttt > 2:1986738/1‑91 (MQ=255) cGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTa > 1:4855573/1‑91 (MQ=255) cGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTa > 2:3902351/1‑91 (MQ=255) gaagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTAt < 2:117239/91‑1 (MQ=255) gaagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTAt > 2:3290239/1‑91 (MQ=255) gaagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTAt > 2:4763275/1‑91 (MQ=255) gaagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTAt < 2:4616180/91‑1 (MQ=255) aagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATg < 1:4010924/91‑1 (MQ=255) aagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATg < 2:4200768/91‑1 (MQ=255) gaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGAt > 2:4543643/1‑91 (MQ=255) aaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATc > 1:133396/1‑91 (MQ=255) aaTCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATg < 1:3118356/91‑1 (MQ=255) aTCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATgg > 1:2621373/1‑91 (MQ=255) tCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGc > 1:815040/1‑91 (MQ=255) tCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGc > 1:866101/1‑91 (MQ=255) tCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGAGTTGTGCGTCTTTTTCTTTTATGATCTATGGc > 2:676541/1‑91 (MQ=255) gCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATTCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAg < 2:3788184/91‑1 (MQ=255) ccATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGa < 1:3963991/91‑1 (MQ=255) atatTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGAtt > 2:806399/1‑91 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGTCAGATTGGCTACt > 2:4286004/1‑91 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt > 2:516270/1‑91 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt < 1:3267959/91‑1 (MQ=255) atatatACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACtt > 2:1780394/1‑91 (MQ=255) tataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAtt < 2:5100189/91‑1 (MQ=255) ataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAttt > 2:2716627/1‑91 (MQ=255) taCAAATAAAACGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGCCTACTTAtttt > 2:5620159/1‑90 (MQ=255) aCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCt < 2:5217145/91‑1 (MQ=255) cAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtt > 1:1684556/1‑91 (MQ=255) cAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGAGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtt > 2:2898881/1‑91 (MQ=255) aaaTAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCttt < 1:4310741/91‑1 (MQ=255) aaTAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtttt < 1:1535411/91‑1 (MQ=255) aaTAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtttt < 1:2023985/91‑1 (MQ=255) tAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTtat < 2:3410653/91‑1 (MQ=255) aaagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGc > 1:3307390/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc > 1:108254/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc > 1:3541656/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc > 1:2251989/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc < 2:1481140/91‑1 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc > 2:2053406/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc < 2:217649/91‑1 (MQ=255) gaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAt > 2:2627382/1‑91 (MQ=255) gaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAt > 1:3192866/1‑91 (MQ=255) gaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTGATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAt > 1:5486290/1‑91 (MQ=255) aaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAtt < 1:3408039/91‑1 (MQ=255) aaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAtt > 2:4072550/1‑91 (MQ=255) aagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAttt > 2:4018884/1‑91 (MQ=255) agCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTa > 2:1924926/1‑91 (MQ=255) agCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTa > 2:3498575/1‑91 (MQ=255) gCACAACACTCACGTATATA‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTAc > 1:3065284/1‑91 (MQ=25) cacaA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACt < 1:2529466/91‑1 (MQ=255) acaA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACtt > 1:2384523/1‑91 (MQ=255) caA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTc > 2:3146057/1‑91 (MQ=255) caA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTc > 1:5137472/1‑91 (MQ=255) acaCTCACGTATATA‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCa > 1:3002169/3‑91 (MQ=37) caCTCACGTATATA‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATTATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAc > 2:4843801/2‑91 (MQ=37) aCTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAc < 1:4970698/91‑1 (MQ=255) cTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAcc < 1:2930234/91‑1 (MQ=255) cTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAcc > 2:2980235/1‑91 (MQ=255) cTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAcc < 2:1358841/91‑1 (MQ=255) cAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCtt < 1:4754586/91‑1 (MQ=255) cAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCtt < 1:1286204/91‑1 (MQ=255) aC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTa > 2:2324298/1‑91 (MQ=255) c‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 1:5081254/1‑91 (MQ=255) c‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 2:5300295/1‑91 (MQ=255) c‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 1:965765/1‑91 (MQ=255) | TAACATAGTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAC > USA300TCH1516_ALE/2309703‑2309883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |