New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 646656 =325 (1.130)14 (0.060) 10/140 NT 5.1% intergenic (+10/‑577) lipL/galK Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase
?USA300TCH1516_ALE 646692 = 237 (0.940)intergenic (+46/‑541) lipL/galK Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase

ATGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/646755‑646656
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGA  >  USA300TCH1516_ALE/646692‑646781
                                                                                                                                                                                              
ATGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAG                                                                                                     >  2:3894315/1‑91
ATGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAG                                                                                                     <  1:4918838/91‑1
ATGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAG                                                                                                     >  1:3628958/1‑91
 TGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGG                                                                                                    <  2:3532851/91‑1
 TGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGG                                                                                                    >  2:2968733/1‑91
 TGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGG                                                                                                    >  2:214329/1‑91
 TGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGG                                                                                                    <  1:731931/91‑1
  GATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGG                                                                                                   <  2:899483/91‑1
  GATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGG                                                                                                   >  2:2646325/1‑91
  GATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGG                                                                                                   <  1:5371680/91‑1
  GATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGG                                                                                                   <  1:4828461/91‑1
  GATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGG                                                                                                   <  1:3067313/91‑1
   ATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGG                                                                                                  <  1:5410306/91‑1
   ATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGG                                                                                                  <  2:3454772/91‑1
    TGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGC                                                                                                 >  1:811318/1‑91
    TGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGC                                                                                                 <  2:2965681/91‑1
    TGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGC                                                                                                 <  1:4979071/91‑1
    TGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGC                                                                                                 >  1:4777879/1‑91
    TGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGC                                                                                                 >  2:3778228/1‑91
    TGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGC                                                                                                 <  1:3384731/91‑1
     GTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCT                                                                                                <  2:5215355/91‑1
     GTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCT                                                                                                <  1:3804670/91‑1
     GTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCT                                                                                                >  1:54295/1‑91
     GTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCT                                                                                                >  1:360339/1‑91
     GTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCT                                                                                                >  1:53879/1‑91
      TTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTG                                                                                               >  2:362712/1‑91
      TTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTG                                                                                               >  2:361853/1‑91
      TTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTG                                                                                               <  2:5187141/91‑1
       TCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGT                                                                                              <  1:1882102/91‑1
       TCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGT                                                                                              >  1:2119654/1‑91
       TCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGT                                                                                              <  1:4903161/91‑1
       TCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGT                                                                                              <  2:3028605/91‑1
       TCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGT                                                                                              >  2:2727743/1‑91
         AATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAACATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTA                                                                                            <  1:4325611/91‑1
         AATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTA                                                                                            <  1:628532/91‑1
         AATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTA                                                                                            <  1:4050676/91‑1
         AATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTA                                                                                            <  1:4224076/91‑1
         AATGTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTA                                                                                            <  2:3274393/91‑1
                         CAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCA                                                                            >  2:4563248/1‑91
                         CAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCA                                                                            >  2:1750380/1‑91
                                                            AAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTA                                         >  1:1740868/1‑91
                                                                  ACAGCCCCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGA                                   >  1:888554/1‑91
                                                                   CAGCCCCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAGATATGTTATTGACCTAATATTTAAATTGAA                                  >  1:4354024/1‑91
                                                                    AGCCCCAAACGATAACTTGAAAGGGGCTGTTATATTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAC                                 >  1:5613633/1‑91
                                                                     GCCCCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACA                                >  1:3347783/1‑91
                                                                     GCCCCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACA                                >  2:2771642/1‑91
                                                                      CCCCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACAT                               >  1:2446114/1‑91
                                                                        CCAAACGATAACTTGAAAGGGGCTGTTATTTTTTAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCA                             >  2:4231306/1‑91
                                                                        CCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCA                             >  1:533806/1‑91
                                                                        CCAAACGATAACTTGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCA                             >  1:4258662/1‑91
                                                                          AAACGATAACTAGAAAGGGGCTGATATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATT                           >  2:1059259/1‑91
                                                                           AACGATAACTCGAAAGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATCAATATGTTATTGAACTAATATTTAAATTGAACATCATTA                          >  2:1466109/1‑91
                                                                                          GGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGA           >  1:537178/1‑91
                                                                                           aGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGAT          <  2:1205805/90‑1
                                                                                           GGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGAT          <  1:775937/91‑1
                                                                                            GGCTGTTATTTTTGAAGGAATCCAAAAAAGGGATAAATATGTTATTGACCTAATATTTAAATTGATCATCATTAAATTAAAAGTAATGATA         <  2:5369250/91‑1
                                                                                            GGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATA         >  2:1764950/1‑91
                                                                                            GGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATA         >  1:3645507/1‑91
                                                                                            GGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATA         <  2:4979363/91‑1
                                                                                            GGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATA         >  1:178853/1‑91
                                                                                            GGCTGTTAGTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATA         <  2:2668564/91‑1
                                                                                             GCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATAT        >  1:2844245/1‑91
                                                                                             GCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATAT        <  1:2146487/91‑1
                                                                                             GCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATAT        >  2:68131/1‑91
                                                                                             GCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATAT        <  2:4760197/91‑1
                                                                                             GCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATAT        <  2:3555944/91‑1
                                                                                               TGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTCTTGACCTAATAGTTAAATTGAACATCATTAAATTAAAAGTAATGATATGA      >  1:4694793/1‑91
                                                                                               TGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGA      <  1:3870391/91‑1
                                                                                                tTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGAT     <  2:3000215/90‑1
                                                                                                GTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGAT     >  2:1079956/1‑91
                                                                                                GTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGAT     >  1:394355/1‑91
                                                                                                GTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGAT     >  1:3924964/1‑91
                                                                                                GTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGAT     <  1:2081894/91‑1
                                                                                                GTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGAT     >  1:5157705/1‑91
                                                                                                 TTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATG    <  2:1331678/91‑1
                                                                                                 TTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATG    <  1:3852437/91‑1
                                                                                                   ATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTATAAGTAATGATATGATGGA  >  2:1333246/1‑91
                                                                                                   ATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGA  <  2:1145997/91‑1
                                                                                                   ATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGA  >  2:3401332/1‑91
                                                                                                                                                                                              
ATGATGTTCAATTTAAATATTAGGTCAATAACATATTTATGCTTTTTATGGATACTTTCAAAAATAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/646755‑646656
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGGA  >  USA300TCH1516_ALE/646692‑646781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.