New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 760026 =292 (1.020)18 (0.080) 12/132 NT 8.2% coding (1674/1674 nt) USA300HOU_RS03705 Putative multidrug export ATP‑binding/permease protein
?USA300TCH1516_ALE 760070 = 162 (0.690)intergenic (+44/+83) USA300HOU_RS03705/mgrA Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA

Only 100 of 126 total aligned reads displayed.

AGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/760129‑760026
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagcagttttttAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTT  >  USA300TCH1516_ALE/760070‑760159
                                                                                                                                                                                                  
AGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTAT                                                                                                         >  2:4971514/1‑91
AGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTAT                                                                                                         <  1:2496960/91‑1
 GTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATC                                                                                                        <  1:125047/91‑1
 GTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGAAAAAAAAAAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATC                                                                                                        <  2:1214749/91‑1
  TAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCA                                                                                                       <  2:735192/91‑1
  TAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCA                                                                                                       <  2:2861533/91‑1
  TAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCA                                                                                                       <  2:187267/91‑1
  TAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCA                                                                                                       <  1:1825228/91‑1
  TAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCA                                                                                                       <  1:4756797/91‑1
  TAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCA                                                                                                       <  1:3268342/91‑1
   AATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA                                                                                                      >  2:1105243/1‑91
   AATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA                                                                                                      >  2:5433835/1‑91
   AATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA                                                                                                      >  2:425812/1‑91
   AATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA                                                                                                      <  2:1893632/91‑1
   AATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA                                                                                                      <  2:1847041/91‑1
    ATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAa                                                                                                     >  2:453403/1‑90
    ATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAG                                                                                                     >  1:4387479/1‑91
    ATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAG                                                                                                     >  2:4854545/1‑91
    ATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAG                                                                                                     <  1:4208029/91‑1
    ATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAG                                                                                                     >  2:2190062/1‑91
    ATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAG                                                                                                     <  1:3085358/91‑1
     TGTTTAGGATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGC                                                                                                    <  1:4465585/91‑1
     TGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGC                                                                                                    <  2:2246291/91‑1
     TGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGC                                                                                                    >  1:3771981/1‑91
      GTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCA                                                                                                   <  1:181554/91‑1
       TTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAG                                                                                                  <  2:5406414/91‑1
       TTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAG                                                                                                  <  2:1684931/91‑1
       TTTAGAACTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAG                                                                                                  <  1:4506038/91‑1
        TTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGT                                                                                                 <  1:1424463/91‑1
        TTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGT                                                                                                 >  2:1207177/1‑91
         TAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTT                                                                                                <  2:3040666/91‑1
         TAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTT                                                                                                >  2:2057546/1‑91
         TAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTT                                                                                                <  1:249851/91‑1
         TAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTT                                                                                                >  1:54703/1‑91
          AGAATTTATTAAGAAGAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTT                                                                                               <  2:4801353/91‑1
           GAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTT                                                                                              <  1:639883/91‑1
           GAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTT                                                                                              >  1:3023840/1‑91
           GAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTT                                                                                              >  2:5499755/1‑91
            AATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTT                                                                                             <  2:2338506/91‑1
            AATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTT                                                                                             <  1:326438/91‑1
            AATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTT                                                                                             <  2:735062/91‑1
             ATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTT                                                                                            <  2:3986024/91‑1
                                    TTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTA                                                                     >  2:2882552/1‑91
                                    TTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTA                                                                     <  1:2978347/91‑1
                                    TTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAG                                                                                                     >  2:4089201/1‑59
                                      AGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGATTACGCGTGCTAAT                                                                   >  1:4687858/1‑91
                                                             AAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATT                                            >  1:2286227/1‑91
                                                              AAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTC                                           >  1:4578609/1‑91
                                                                 ACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAA                                        >  2:1571655/1‑91
                                                                   TGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAAC                                      >  1:2263178/1‑91
                                                                      TTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATT                                   >  1:4304179/1‑91
                                                                       TGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATCAATTCTAAACATTA                                  >  2:4332158/1‑91
                                                                       TGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTA                                  >  2:5338790/1‑91
                                                                           AGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTT                              >  1:1123088/1‑91
                                                                           AGGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTT                              >  2:3972873/1‑91
                                                                            GGTTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTA                             >  2:2089866/1‑91
                                                                              TTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAAT                           >  2:411034/1‑91
                                                                              TTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAAT                           >  1:1755187/1‑91
                                                                                          TCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAA               >  2:4061919/1‑91
                                                                                           CAAGCAGTTTTTTAACTCACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAA              >  1:5471510/1‑91
                                                                                           CAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAA              >  1:3962079/1‑91
                                                                                            AAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAG             >  1:304800/1‑91
                                                                                            AAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAG             <  2:4817508/91‑1
                                                                                             AGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGT            <  1:4172528/91‑1
                                                                                             AGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGT            >  2:5033287/1‑91
                                                                                              GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTT           >  1:1659500/1‑91
                                                                                              GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTT           <  1:3986024/91‑1
                                                                                              GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTT           >  1:4013880/1‑91
                                                                                              GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTT           >  2:2473506/1‑91
                                                                                              GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTT           <  2:2493549/91‑1
                                                                                              GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTT           <  2:2494155/91‑1
                                                                                              GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTT           >  2:3812011/1‑91
                                                                                               CAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTA          <  1:1683465/91‑1
                                                                                               CAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTCTCATGACGAAAGTTA          >  2:4346865/1‑91
                                                                                                AGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAA         <  2:1107867/91‑1
                                                                                                AGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAA         <  1:5148528/91‑1
                                                                                                 GTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAAT        >  2:1741130/1‑91
                                                                                                 GTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAAT        >  2:5038524/1‑91
                                                                                                 GTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAAT        >  1:1529864/1‑91
                                                                                                 GTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAAT        <  1:2307203/91‑1
                                                                                                 GTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAAT        >  1:455013/1‑91
                                                                                                 GTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAAT        <  1:2248132/91‑1
                                                                                                  TTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATT       >  2:2191193/1‑91
                                                                                                  TTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATT       >  2:717734/1‑91
                                                                                                    TTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAT     <  2:3482389/91‑1
                                                                                                    TTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAT     <  1:2284391/91‑1
                                                                                                    TTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAT     <  1:3273592/91‑1
                                                                                                    TTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAT     <  1:5642119/91‑1
                                                                                                    TTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAT     >  2:1023092/1‑91
                                                                                                    TTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAT     <  2:4348807/91‑1
                                                                                                     TTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATT    <  1:768356/91‑1
                                                                                                     TTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATT    >  2:1542492/1‑91
                                                                                                     TTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATT    >  2:4105973/1‑91
                                                                                                      TTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTT   <  1:1058423/91‑1
                                                                                                      TTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTT   <  1:4132863/91‑1
                                                                                                       TAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTT  <  1:601276/91‑1
                                                                                                       TAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTT  <  1:2090734/91‑1
                                                                                                       TAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTT  >  1:258615/1‑91
                                                                                                       TAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTT  <  1:1919935/91‑1
                                                                                                       TAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATCACAAAAGTTAATTATTTT  >  2:4399987/1‑91
                                                                                                                                                                                                  
AGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/760129‑760026
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagcagttttttAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTT  >  USA300TCH1516_ALE/760070‑760159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.