New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1457718NA (NA)22 (0.090) 13/138 NT NA intergenic (+103/+28) USA300HOU_RS07235/ybjG hypothetical protein/Putative undecaprenyl‑diphosphatase YbjG
?USA300TCH1516_ALE = 1457722 NA (NA)intergenic (+107/+24) USA300HOU_RS07235/ybjG hypothetical protein/Putative undecaprenyl‑diphosphatase YbjG

Only 100 of 191 total aligned reads displayed.

CTTTAGGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1457618‑1457718
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccacccgtGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATT  <  USA300TCH1516_ALE/1457722‑1457633
                                                                                                                                                                                                
CTTTAGGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACA                                                                                                       <  1:2859320/91‑1
 TTTAGGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAA                                                                                                      <  2:3017042/91‑1
  TTAGGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAA                                                                                                     <  1:438109/91‑1
   TAGGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAAC                                                                                                    <  2:470004/91‑1
    AGGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACC                                                                                                   >  1:383099/1‑91
     GGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCGAGTAAGGAAGGCTTATAGCCGCAGAACAAACCA                                                                                                  <  1:5606693/91‑1
     GGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCA                                                                                                  >  1:1239538/1‑91
     GGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCA                                                                                                  <  2:2478937/91‑1
      GGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCAC                                                                                                 >  1:4244563/1‑91
      GGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCAC                                                                                                 >  1:2701401/1‑91
      GGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCAC                                                                                                 >  1:4798923/1‑91
      GGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCAC                                                                                                 <  1:5083977/91‑1
      GGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCAC                                                                                                 >  1:2935750/1‑91
      GGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGACAGTAAGGAAGGCTTATTGCCGCAGAACAAACCAC                                                                                                 <  1:4270509/91‑1
       GTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACC                                                                                                <  2:130713/91‑1
       GTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACC                                                                                                <  1:4756174/91‑1
       GTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACC                                                                                                <  2:3546769/91‑1
       GTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACC                                                                                                <  2:4569307/91‑1
        TTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCC                                                                                               >  1:3099295/1‑91
         TGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCG                                                                                              <  1:5139666/91‑1
         TGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCG                                                                                              <  2:1010424/91‑1
         TGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCG                                                                                              <  2:218397/91‑1
         TGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCG                                                                                              <  2:968673/91‑1
         TGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCG                                                                                              <  1:119722/91‑1
          GCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGT                                                                                             >  1:845436/1‑91
          GCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGT                                                                                             >  2:1908989/1‑91
          GCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGT                                                                                             >  2:3124780/1‑91
          GCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGT                                                                                             >  1:2054024/1‑91
          GCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGT                                                                                             <  1:2803530/91‑1
          GCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTAAAGCCGCAGAACAAACCACCCGT                                                                                             >  1:3668463/1‑91
             GGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTG                                                                                          <  1:1097793/91‑1
              GAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGA                                                                                         <  1:3867815/91‑1
               AATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAA                                                                                       <  1:3183032/91‑1
               AATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAA                                                                                       <  2:5349024/91‑1
               AATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAA                                                                                       <  2:1528938/91‑1
               AATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAA                                                                                       <  1:537773/91‑1
               AATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAA                                                                                       <  1:913744/91‑1
                ATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAATCCACCCGTGTGAAC                                                                                      <  1:4535581/91‑1
                ATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAAC                                                                                      <  1:4534602/91‑1
                ATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAAC                                                                                      <  1:754939/91‑1
                ATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAAC                                                                                      <  2:1157462/91‑1
                ATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGACAGTAAGGATGGCTTATAGCCGCAGAACAAACCACCCGTGTGAAC                                                                                      <  2:5446023/91‑1
                ATAGTAGTGCAGTTGGCTCACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAAC                                                                                      <  1:5554797/91‑1
                 TAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAACG                                                                                     <  2:1987471/91‑1
                 TAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAACG                                                                                     <  1:1719925/91‑1
                 TAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTGTGAACG                                                                                     <  1:2500536/91‑1
                                           GTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTTCACACGGGTGGTTTGTTCTGCGGCTATAAGCC                                                           >  1:81327/1‑91
                                                    TAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTTCACACGGGTGGTTTGTACTGCGGCTATAAGCCTTCCTTACT                                                  >  1:1388434/1‑91
                                                                  AAGGAAGGCTTATAGCCGCAGAACAAACCACCCGTTCACACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAA                                    >  2:2278426/1‑91
                                                                                  CGCAGAACAAACCACCCGTTCACACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCA                    >  2:4934531/1‑91
                                                                                    CAGAACAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGC                  >  1:1955017/1‑91
                                                                                          AAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTG            >  1:192015/1‑91
                                                                                          AAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTG            >  2:3106847/1‑91
                                                                                           AACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGC           >  2:1480382/1‑91
                                                                                           AACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGC           >  2:1581521/1‑91
                                                                                           AACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGC           >  2:2679571/1‑91
                                                                                           AACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGC           >  2:3380212/1‑91
                                                                                           AACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGC           >  2:3423010/1‑91
                                                                                           AACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGC           >  1:4365777/1‑91
                                                                                           AACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGC           >  1:381102/1‑91
                                                                                           AACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGC           >  1:3699621/1‑91
                                                                                            ACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCc          >  2:919952/1‑90
                                                                                            ACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCA          <  2:3881810/91‑1
                                                                                            ACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCA          <  2:4226592/91‑1
                                                                                            ACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCA          <  2:698881/91‑1
                                                                                            ACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCA          <  2:1359322/91‑1
                                                                                            ACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCA          <  1:5076799/91‑1
                                                                                            ACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCA          <  1:935856/91‑1
                                                                                             CCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCAC         <  2:1788886/91‑1
                                                                                             CCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCAC         <  1:1583780/91‑1
                                                                                             CCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCAC         >  2:3229361/1‑91
                                                                                             CCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCAC         <  2:859048/91‑1
                                                                                              CACCCGTGTGAACGGGTGGTTTGTTCTGCTGCTATAAGCCTTCCTTACTGGCCAGCTCTAAAAGGGCACTGCCAATTCAGCCAACTGCACT        >  2:3907025/1‑91
                                                                                              CACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACT        <  1:3407247/91‑1
                                                                                              CACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACT        <  1:1284900/91‑1
                                                                                              CACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACT        <  1:4990030/91‑1
                                                                                              CACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACT        <  2:4630088/91‑1
                                                                                               ACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTA       <  2:3538103/91‑1
                                                                                               ACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTA       <  1:224904/91‑1
                                                                                                CCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTAC      <  1:5203416/91‑1
                                                                                                CCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTAC      <  1:2003634/91‑1
                                                                                                CCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTAC      <  1:2627392/91‑1
                                                                                                CCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTAC      <  1:3163373/91‑1
                                                                                                 CCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACT     <  1:1026006/91‑1
                                                                                                 CCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACT     >  2:4113551/1‑91
                                                                                                 CCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACT     >  1:912919/1‑91
                                                                                                  CGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTA    >  2:3370839/1‑91
                                                                                                  CGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTA    >  1:1786479/1‑91
                                                                                                   GTGTGAACGGGTGGTTTGTTCTGCGGCTATGAGCCTTCCTTCCTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTAT   >  2:3807152/1‑91
                                                                                                   GTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTAT   >  2:37369/1‑91
                                                                                                   GTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTAT   >  1:1260562/1‑91
                                                                                                   GTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTAT   >  1:3772766/1‑91
                                                                                                   GTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTAT   >  2:1534160/1‑91
                                                                                                    TGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGTCAAGTCAGCCAACTGCACTACTATT  >  2:5241641/1‑91
                                                                                                    TGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATT  >  1:493610/1‑91
                                                                                                    TGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATT  <  1:3024713/91‑1
                                                                                                    TGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATT  <  2:564837/91‑1
                                                                                                    TGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATT  <  1:5534089/91‑1
                                                                                                    TGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATT  <  1:669962/91‑1
                                                                                                    TGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATT  >  1:329499/1‑91
                                                                                                                                                                                                
CTTTAGGGTTGCTGGAATAGTAGTGCAGTTGGCTGACTTGTCAGTGCCCTTTTAGGGCTGGCCAGTAAGGAAGGCTTATAGCCGCAGAACAAACCACCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1457618‑1457718
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccacccgtGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATT  <  USA300TCH1516_ALE/1457722‑1457633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.