New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1657692205 (0.710)10 (0.040) 9/130 NT 5.0% intergenic (‑15/+37) comGA/USA300HOU_RS08250 ComG operon protein 1/putative metallo‑hydrolase
?USA300TCH1516_ALE = 1657702 210 (0.900)intergenic (‑25/+27) comGA/USA300HOU_RS08250 ComG operon protein 1/putative metallo‑hydrolase

ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1657588‑1657692
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacacctcctacGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTT  <  USA300TCH1516_ALE/1657702‑1657613
                                                                                                                                                                                                    
ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAA                                                                                                           <  1:2410175/91‑1
ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAA                                                                                                           >  2:3034551/1‑91
ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAA                                                                                                           >  2:1616422/1‑91
ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAA                                                                                                           >  1:3931061/1‑91
ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAA                                                                                                           >  1:3992916/1‑91
ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAA                                                                                                           <  1:2411767/91‑1
ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAA                                                                                                           >  1:5463093/1‑91
 CTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCCAAA                                                                                                          >  2:3919534/1‑91
 CTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAA                                                                                                          >  1:4420430/1‑91
 CTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAA                                                                                                          >  2:3009052/1‑91
 CTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAA                                                                                                          >  2:187744/1‑91
  TTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAA                                                                                                         >  2:2230782/1‑91
   TACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAA                                                                                                        >  2:4647452/1‑91
    ACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAA                                                                                                       <  2:3834589/91‑1
     CTTCATTTTTAACTGGAATAAAATGTTCATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAAC                                                                                                      <  1:4931447/91‑1
     CTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAAC                                                                                                      <  1:4931267/91‑1
     CTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAAC                                                                                                      <  1:4796571/91‑1
     CTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAAC                                                                                                      <  2:1144336/91‑1
     CTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAAC                                                                                                      <  1:5556106/91‑1
     CTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAAC                                                                                                      >  2:1382111/1‑91
     CTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAAC                                                                                                      <  2:1297658/91‑1
     CTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAAC                                                                                                      <  1:2658418/91‑1
     CTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTAAAAAAAAC                                                                                                      <  2:2305929/91‑1
      TTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACA                                                                                                     >  1:5049307/1‑91
       TCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACAC                                                                                                    >  1:3328891/1‑91
       TCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATATCTATCGCTTTATTAATTATTTCTTGAAATAAAAAAAAAAAAAAAACAC                                                                                                    <  2:1922828/91‑1
       TCATTTTTAACTGGAATAAAATGTACATCACACGCTTTCATTTCTATCGCTGTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACAC                                                                                                    <  2:3963510/91‑1
       TCATTTTTAACCGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAAAAAAAAAAAAAAAACAC                                                                                                    <  2:5635987/91‑1
       TCATTTAGAACTGGACTAAAATGTACATCACTCGCTTTCATTTCTATCGCTTAATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACAC                                                                                                    <  2:4344718/91‑1
        CATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACC                                                                                                   <  1:383744/91‑1
        CATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACC                                                                                                   <  1:2574652/91‑1
        CATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACC                                                                                                   <  1:384657/91‑1
          TTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTC                                                                                                 <  2:4463965/91‑1
          TTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTC                                                                                                 >  2:908829/1‑91
          TTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTC                                                                                                 <  1:765871/91‑1
          TTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTC                                                                                                 <  1:3159047/91‑1
           TTTTAACTGGAATAACATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGACATAGAATCTTCAAAAAAACACCTCC                                                                                                >  2:2156417/1‑91
           TTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCC                                                                                                <  1:312060/91‑1
           TTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCC                                                                                                >  2:485570/1‑91
             TTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTt                                                                                              >  1:4091312/1‑90
             TTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTA                                                                                              <  1:1564665/91‑1
             TTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTA                                                                                              <  1:5442874/91‑1
                     AATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACGTGATTA                                                                                      <  1:3325531/91‑1
                       TAAAATGTATATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACGTGATTATA                                                                                   <  2:5344352/91‑1
                       TAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACGTGATTATA                                                                                   <  1:886605/91‑1
                       TAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACGTGATTATA                                                                                   <  1:1978391/91‑1
                                 ATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACGTGATTATATGTAGGAGGT                                                                         <  1:2488366/91‑1
                                  TCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACGTGATTATATGTAGGAGGTG                                                                        <  2:515042/91‑1
                                   CACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACGTGATTATATGTAGGAGGTGT                                                                       >  1:3919534/1‑91
                                                               AATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATA                                           >  1:1428879/1‑91
                                                                        TTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTCTTGAAGCTTCTATTTCAAGAAATAATTAATAAA                                  >  2:1750436/1‑91
                                                                              TAGAATCTTCAAAAAAACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATA                            <  1:219632/91‑1
                                                                                         AAAAAACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGC                 <  2:1468505/91‑1
                                                                                          AAAAACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCG                >  2:2994266/1‑91
                                                                                          AAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCG                >  1:3869330/1‑91
                                                                                            AAACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAG              >  1:887213/1‑91
                                                                                            AAACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAG              >  2:2468661/1‑91
                                                                                            AAACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAG              >  1:3297456/1‑91
                                                                                            AAACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAG              >  1:2843595/1‑91
                                                                                              ACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTG            >  2:4583960/1‑91
                                                                                              ACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTG            <  2:4150903/91‑1
                                                                                              ACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTG            >  2:4583860/1‑91
                                                                                              ACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTG            <  1:2168434/91‑1
                                                                                              ACACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTG            >  2:918772/1‑91
                                                                                              ACACCTCCTACGTGATTATATGTAGGAGGAGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAACCGAGTG            >  2:4011925/1‑91
                                                                                               CACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGA           >  1:4085742/1‑91
                                                                                               CACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGA           >  1:3195987/1‑91
                                                                                                ACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGAT          >  1:4539125/1‑91
                                                                                                ACCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGAT          >  1:4539341/1‑91
                                                                                                 CCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATG         <  2:2517330/91‑1
                                                                                                 CCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATG         >  1:4125902/1‑91
                                                                                                 CCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATG         >  1:354604/1‑91
                                                                                                 CCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATG         >  1:1993943/1‑91
                                                                                                 CCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATG         >  1:3034551/1‑91
                                                                                                 CCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATG         <  1:3027125/91‑1
                                                                                                 CCTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCGATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATG         >  1:4399256/1‑91
                                                                                                  CTCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGT        <  1:3541921/91‑1
                                                                                                   TCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTA       >  1:1701681/1‑91
                                                                                                   TCCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTA       >  1:1305105/1‑91
                                                                                                    CCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTAC      <  2:661514/91‑1
                                                                                                    CCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTAC      >  2:705922/1‑91
                                                                                                    CCTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTAC      <  2:224994/91‑1
                                                                                                     CTACGTGATTATATGTAGGAGGTGTTTTTTTTATGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACA     >  2:4014182/1‑91
                                                                                                     CTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACA     >  1:2652345/1‑91
                                                                                                     CTACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACA     <  1:963751/91‑1
                                                                                                      TACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACAT    <  2:967534/91‑1
                                                                                                      TACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACAT    <  2:810105/91‑1
                                                                                                      TACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACAT    <  2:294564/91‑1
                                                                                                      TACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACAT    <  2:2718983/91‑1
                                                                                                      TACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACAT    <  1:4535789/91‑1
                                                                                                      TACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACAT    <  1:2723303/91‑1
                                                                                                      TACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACAT    <  1:1745796/91‑1
                                                                                                       ACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATT   <  2:4100011/91‑1
                                                                                                       ACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATT   >  2:25627/1‑91
                                                                                                       ACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATT   >  2:1342608/1‑91
                                                                                                       ACGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATT   <  1:1330582/91‑1
                                                                                                        CGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTT  >  1:3469899/1‑91
                                                                                                        CGTGATTATATGTAGGAGGTGTGTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTT  <  2:2872721/91‑1
                                                                                                                                                                                                    
ACTTACTTCATTTTTAACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1657588‑1657692
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacacctcctacGTGATTATATGTAGGAGGTGTTTTTTTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTT  <  USA300TCH1516_ALE/1657702‑1657613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.