New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2062959 =321 (1.120)13 (0.050) 7/132 NT 5.3% intergenic (+40/+150) pheA/sdcS P‑protein/Sodium‑dependent dicarboxylate transporter SdcS
?USA300TCH1516_ALE 2063001 = 198 (0.840)intergenic (+82/+108) pheA/sdcS P‑protein/Sodium‑dependent dicarboxylate transporter SdcS

Only 100 of 129 total aligned reads displayed.

TTGGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2063062‑2062959
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccttggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTT  >  USA300TCH1516_ALE/2063001‑2063090
                                                                                                                                                                                                  
TTGGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAA                                                                                                         <  1:1987088/91‑1
 TGGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAAT                                                                                                        >  2:2017091/1‑91
 TGGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAAT                                                                                                        >  2:1946757/1‑91
 TGGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAAT                                                                                                        >  2:1047702/1‑91
  GGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATC                                                                                                       >  2:827170/1‑91
  GGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATC                                                                                                       >  2:1184462/1‑91
  GGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATC                                                                                                       >  1:2220567/1‑91
  GGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATC                                                                                                       >  1:2038416/1‑91
   GACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCC                                                                                                      <  2:3984953/91‑1
     CGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTT                                                                                                    >  1:4908690/1‑91
       AGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAATAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGG                                                                                                  <  2:3311149/91‑1
       AGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGG                                                                                                  >  1:1847633/1‑91
       AGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGG                                                                                                  >  1:5647096/1‑91
        GTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGT                                                                                                 >  1:621644/1‑91
        GTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGT                                                                                                 >  2:4400270/1‑91
        GTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGT                                                                                                 >  2:1529219/1‑91
        GTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGT                                                                                                 >  1:842602/1‑91
        GTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGT                                                                                                 >  2:2486717/1‑91
         TGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTT                                                                                                >  1:2962506/1‑91
         TGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTT                                                                                                >  1:350270/1‑91
         TGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTT                                                                                                >  1:2855389/1‑91
         TGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTT                                                                                                <  2:3452045/91‑1
         TGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTT                                                                                                >  1:2018113/1‑91
         TGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTT                                                                                                >  2:1138968/1‑91
         TGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTT                                                                                                >  1:2441929/1‑91
          GGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTG                                                                                               >  2:3691301/1‑91
           GTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGA                                                                                              <  1:3026908/91‑1
           GTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGA                                                                                              >  2:3643045/1‑91
           GTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGA                                                                                              >  1:4520766/1‑91
           GTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGA                                                                                              <  1:1617396/91‑1
           GTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGA                                                                                              <  2:3591364/91‑1
           GTAACGAAACGTATAACGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGA                                                                                              <  2:4829933/91‑1
            TAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGAC                                                                                             >  2:2699605/1‑91
            TAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGAC                                                                                             >  2:4577792/1‑91
            TAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGAC                                                                                             >  2:2467723/1‑91
            TAACGAAAAGTATACCGCAGCATCGTGGAAAAACAATACAAACAAAAGAAAGTCAACCTAGGATGGATTCCTATTTTAATCCTTGGTTGAC                                                                                             <  2:1750389/91‑1
             AACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTCTTTTAAGCCTTGGTTGACT                                                                                            <  2:5248146/91‑1
             AACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGACT                                                                                            <  1:5098589/91‑1
             AACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGACT                                                                                            <  1:1397081/91‑1
             AACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGACT                                                                                            >  2:193932/1‑91
                                         AAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAA                                                                                                         >  2:4188773/1‑50
                                         AAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAA                                                                                                         <  1:4188773/50‑1
                                                          AGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTT                                               >  1:3222043/1‑91
                                                                TCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTAC                                         >  1:2828445/1‑91
                                                                    CCAAGGATGGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACT                                     >  2:2077452/1‑91
                                                                         GATGGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCC                                >  2:1770709/1‑91
                                                                           TGGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAA                              >  1:3824615/1‑91
                                                                           TGGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAA                              >  2:390133/1‑91
                                                                           TGGAGTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAA                              >  2:1324192/1‑91
                                                                            GGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAG                             >  2:4830656/1‑91
                                                                            GGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAG                             >  2:148933/1‑91
                                                                            GGATTCCTATTTTAATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAG                             >  2:3333415/1‑91
                                                                                          ATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTA               <  2:4798248/91‑1
                                                                                          ATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTA               <  2:4799696/91‑1
                                                                                          ATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTA               <  2:4799734/91‑1
                                                                                           TCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAA              <  2:1339199/91‑1
                                                                                           TCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAA              <  2:2064312/91‑1
                                                                                           TCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAA              <  1:799331/91‑1
                                                                                            CCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGGGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAAC             <  2:5452080/91‑1
                                                                                            CCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAAC             <  1:688979/91‑1
                                                                                             CTTGGTTGCCTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACC            <  2:140335/91‑1
                                                                                             CTTGGTTGACTTTCTTTTGTTTGTATTTTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACC            >  2:370209/1‑91
                                                                                             CTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACC            >  1:1068833/1‑91
                                                                                             CTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACC            <  2:1304102/91‑1
                                                                                             CTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACC            >  1:2859200/1‑91
                                                                                             CTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACC            <  2:1142882/91‑1
                                                                                             CTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACC            <  2:594039/91‑1
                                                                                              TTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCT           <  1:2387776/91‑1
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          <  2:5181570/91‑1
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          <  2:4376844/91‑1
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          <  2:1373505/91‑1
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          <  2:3272961/91‑1
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          <  2:3272887/91‑1
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          >  1:2485553/1‑91
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          <  2:1373489/91‑1
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          >  1:5413039/1‑91
                                                                                               TGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTT          <  2:3448613/91‑1
                                                                                                GGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTT         <  2:4879493/91‑1
                                                                                                GGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTT         <  2:4854258/91‑1
                                                                                                GGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCGGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTT         <  1:4782943/91‑1
                                                                                                 GTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTT        <  1:1322148/91‑1
                                                                                                 GTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTT        <  1:380387/91‑1
                                                                                                 GTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTT        >  1:4547759/1‑91
                                                                                                 GTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTT        <  1:5276657/91‑1
                                                                                                  TTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTA       <  2:4580742/91‑1
                                                                                                  TTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTA       <  1:4801457/91‑1
                                                                                                   TGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAT      >  1:5116974/1‑91
                                                                                                   TGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAT      <  2:5221625/91‑1
                                                                                                    GACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATT     >  1:4941783/1‑91
                                                                                                     ACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTT    >  1:5313175/1‑91
                                                                                                      CTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTT   <  2:4749532/91‑1
                                                                                                      CTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTT   >  2:4375565/1‑91
                                                                                                      CTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTT   >  2:211449/1‑91
                                                                                                      CTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTT   >  2:2294332/1‑91
                                                                                                      CTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTT   <  2:3637631/91‑1
                                                                                                      CTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTT   >  1:1258232/1‑91
                                                                                                      CTTTCTTTTGGTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTT   <  2:1895153/91‑1
                                                                                                       TTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTT  <  1:3755756/91‑1
                                                                                                       TTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTT  <  1:2927791/91‑1
                                                                                                       TTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTT  >  1:1198215/1‑91
                                                                                                                                                                                                  
TTGGACGAGTGGTAACGAAACGTATACCGCAGCATCGTGTAAAAACAATACAAACAAAAGAAAGTCAACCAAGGATGGATTCCTATTTTAATCCTTGGTTGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2063062‑2062959
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccttggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTT  >  USA300TCH1516_ALE/2063001‑2063090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.