| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2442806 = | 216 (0.750) | 10 (0.040) | 8/128 | NT | 5.2% | intergenic (+3/+55) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
| ? | USA300TCH1516_ALE | 2442855 = | 191 (0.830) | intergenic (+52/+6) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
Only 100 of 127 total aligned reads displayed.
TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2442910‑2442806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC > USA300TCH1516_ALE/2442855‑2442944 TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 2:1954175/91‑1 GATGTTTGGTAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 2:4469768/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATa > 2:2127222/1‑90 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 2:2145150/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 1:118508/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC < 1:6141/91‑1 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 2:4853320/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 2:3845273/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 2:3822038/1‑91 ATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCA < 2:632417/91‑1 TGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT > 2:5273436/1‑91 TGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT > 2:4923846/1‑91 TGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT > 2:5273435/1‑91 TGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT < 1:4153922/91‑1 TGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT > 1:588534/1‑91 GTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA < 2:1513654/91‑1 GTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA < 2:2584479/91‑1 GTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA < 2:2583211/91‑1 GTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA > 2:185622/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA > 1:3159727/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA > 1:936202/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA > 1:2313849/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 1:1454455/91‑1 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA > 1:4444862/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA > 2:2988199/1‑91 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC < 1:2660183/91‑1 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC > 1:3562867/1‑91 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC > 1:2610468/1‑91 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAAC > 2:32654/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 1:3419646/91‑1 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 1:1101781/91‑1 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 1:4848682/91‑1 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 2:3031365/91‑1 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT > 2:303565/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 2:3039048/91‑1 TGATAAGATGTACCACGTTATCGAAACATAAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 2:1414155/91‑1 GATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTT < 1:2391067/91‑1 ATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTC < 2:4035252/91‑1 ATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTC > 2:860552/1‑91 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT > 2:2158459/1‑91 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT > 1:4966358/1‑91 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT < 2:3131930/91‑1 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT > 2:1116370/1‑91 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT > 1:1174368/1‑91 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCAATTAAATCATAACTTCCT > 2:1115860/1‑91 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 2:5428927/91‑1 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 2:928648/91‑1 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 1:4892248/91‑1 GATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTT > 1:3517982/1‑91 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT > 1:1968408/1‑91 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT < 1:2475338/91‑1 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT < 2:193984/91‑1 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT < 2:4579745/91‑1 GAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTAT > 1:1361681/1‑91 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCA > 1:3825290/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACA > 1:2373286/1‑91 TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACAT > 1:4191689/1‑91 ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCA > 2:3848652/1‑91 TAGGCTCAAGGCCATTAAATCATAACTTCCTATTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA > 1:5511280/1‑91 TCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCACACATCAATTCGA > 2:3593976/1‑91 ATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCAT < 2:4284665/91‑1 ATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCAT < 2:2480274/91‑1 ATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCAT > 2:1206602/1‑91 TCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATG > 1:2857387/1‑91 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC > 1:3110627/1‑91 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC < 1:3124371/91‑1 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC < 2:1751719/91‑1 ACTTCCTTTTATCATTTTCTTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 2:1281774/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 2:4064374/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 2:4064038/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 1:3616797/1‑91 CTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCA > 1:369007/1‑91 CTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCA > 2:107685/1‑91 TTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCAT < 2:1755857/91‑1 TTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCAT < 2:1934777/91‑1 TTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCAT < 1:5358166/91‑1 TCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATG > 2:772838/1‑91 TCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATG < 2:2730872/91‑1 TCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCACGGCATCATG > 2:4470741/1‑91 TCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCACGGCATCATG > 2:4470562/1‑91 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 2:1333774/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 1:3034908/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 2:4776248/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 2:3239535/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA > 1:4373976/1‑91 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA > 1:4209777/1‑91 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT > 2:2640949/1‑91 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT > 1:2043084/1‑91 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATA < 2:4550456/91‑1 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATA > 2:1377842/1‑91 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATA < 2:4890620/91‑1 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATA > 2:4116633/1‑91 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATA < 2:2920415/91‑1 TTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAT < 2:1955700/91‑1 TTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAT < 1:4936050/91‑1 TTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATT < 2:4997865/91‑1 TTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATT > 1:1482274/1‑91 TATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC < 2:2875038/91‑1 TATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC < 2:319783/91‑1 TATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC < 2:1454455/91‑1 TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2442910‑2442806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC > USA300TCH1516_ALE/2442855‑2442944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |