New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2541819263 (0.920)15 (0.060) 10/136 NT 5.6% intergenic (+78/‑422) sbi/hlgA Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A
?USA300TCH1516_ALE = 2541837 280 (1.150)intergenic (+96/‑404) sbi/hlgA Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A

Only 100 of 117 total aligned reads displayed.

ATTTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2541719‑2541819
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagaaccgtAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTTT  <  USA300TCH1516_ALE/2541837‑2541749
                                                                                                                                                                                              
ATTTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAA                                                                                                     <  2:1229707/91‑1
 TTTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAA                                                                                                    >  1:1154556/1‑91
 TTTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAA                                                                                                    <  2:2944321/91‑1
 TTTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAA                                                                                                    <  2:2944335/91‑1
  TTATTATCATTCTGGAAATAATCATTCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAA                                                                                                   >  1:5461482/1‑91
  TTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAA                                                                                                   >  2:2448337/1‑91
  TTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAA                                                                                                   >  1:1588939/1‑91
  TTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAA                                                                                                   >  2:736237/1‑91
  TTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAA                                                                                                   <  1:3009400/91‑1
   TATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAA                                                                                                  >  1:1219656/1‑91
   TATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAA                                                                                                  >  1:5331386/1‑91
   TATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAA                                                                                                  >  1:2222023/1‑91
    ATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAG                                                                                                 >  2:902041/1‑91
    ATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAG                                                                                                 >  1:3713644/1‑91
    ATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAG                                                                                                 <  1:1966195/91‑1
    ATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAG                                                                                                 >  1:1401074/1‑91
    ATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCACTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAG                                                                                                 <  2:3316525/91‑1
     TTATCATTCTGGGAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGA                                                                                                <  2:3645114/91‑1
     TTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGA                                                                                                <  2:4971073/91‑1
      TATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAA                                                                                               >  1:684862/1‑91
      TATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAA                                                                                               <  2:2649823/91‑1
      TATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAA                                                                                               <  1:3935693/91‑1
       ATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAAC                                                                                              >  1:2070624/1‑91
       ATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAAC                                                                                              <  1:2070653/91‑1
       ATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAAC                                                                                              >  1:3091462/1‑91
       ATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAAC                                                                                              >  1:3991833/1‑91
        TCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAGTTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  1:5529015/91‑1
        TCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  1:4942349/91‑1
        TCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  2:3571399/91‑1
        TCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  1:4037834/91‑1
        TCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  1:4942309/91‑1
        TCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  2:2339798/91‑1
        TCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  2:2339818/91‑1
        TCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  2:4713050/91‑1
        TCATTCTGGAAATAAACAAACAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACC                                                                                             <  2:1025783/91‑1
         CATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCG                                                                                            <  1:1940907/91‑1
         CATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCG                                                                                            <  1:3840393/91‑1
         CATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCG                                                                                            >  2:4536093/1‑91
         CATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATGAAAAAGAACCG                                                                                            >  2:5657163/1‑91
          ATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGT                                                                                           >  2:182207/1‑91
          ATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGT                                                                                           <  2:1353482/91‑1
          ATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGT                                                                                           <  2:3419911/91‑1
          ATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGT                                                                                           >  2:3657403/1‑91
          ATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGT                                                                                           >  2:4042703/1‑91
                     AATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTG                                                                                <  1:801104/91‑1
                       TCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAG                                                                              <  2:3565871/91‑1
                       TCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAG                                                                              <  2:2223464/91‑1
                       TCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAG                                                                              <  1:2165017/91‑1
                         AATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAGAA                                                                            <  1:278068/91‑1
                           TCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAGAATC                                                                          <  2:3880401/91‑1
                            CAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAGAATCA                                                                         <  2:3024703/91‑1
                                      TTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTT                                                               <  1:1175794/91‑1
                                              TTTTACATCATTTTTTAAATAATTTTCGTAACAAACCTTGATTAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCAC                                                       <  2:2333510/91‑1
                                              TTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCAC                                                       <  1:1391291/91‑1
                                                TTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGG                                                     <  1:4815012/91‑1
                                                                                         AAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAG            >  2:2356307/1‑91
                                                                                         AAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAG            >  2:3451396/1‑91
                                                                                         AAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAG            >  2:3195136/1‑91
                                                                                         AAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAG            >  1:4172939/1‑91
                                                                                         AAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAG            <  1:3173728/91‑1
                                                                                         AAAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAG            >  2:4124125/1‑91
                                                                                          AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAACCTAGAGA           >  2:4928366/1‑91
                                                                                          AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGA           <  2:852770/91‑1
                                                                                          AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGA           >  2:4663383/1‑91
                                                                                          AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGA           <  1:1066920/91‑1
                                                                                          AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGA           <  1:5320339/91‑1
                                                                                          AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGA           >  1:4974708/1‑91
                                                                                          AAAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGA           <  1:2451349/91‑1
                                                                                          AAAAGAACCGTAGATTCGATTGAGAATCAACGGTCCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGA           <  1:1066546/91‑1
                                                                                           AAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAA          <  1:3303236/91‑1
                                                                                           AAAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAA          >  1:350563/1‑91
                                                                                            AAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAG         <  1:761526/91‑1
                                                                                            AAGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGACGTAAAACTAGAGAAG         >  2:4353906/1‑91
                                                                                             AGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGA        <  2:5574223/91‑1
                                                                                             AGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGA        <  1:2245055/91‑1
                                                                                             AGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGA        >  2:3710446/1‑91
                                                                                             AGAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGA        <  2:3693516/91‑1
                                                                                              GAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGAT       <  2:918891/91‑1
                                                                                              GAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGAT       >  2:1417730/1‑91
                                                                                              GAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGAT       >  2:5121277/1‑91
                                                                                              GAACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGAT       <  2:3319950/91‑1
                                                                                              GAACCGTAGATTCGACTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGAT       <  2:3901686/91‑1
                                                                                               AACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATA      <  1:2454363/91‑1
                                                                                                ACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATAT     >  2:1320414/1‑91
                                                                                                ACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATAT     <  1:2931576/91‑1
                                                                                                ACCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATAT     >  1:2283906/1‑91
                                                                                                 CCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGTAGATATT    >  1:4474851/1‑91
                                                                                                 CCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATT    <  1:4199572/91‑1
                                                                                                 CCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATT    >  2:2909625/1‑91
                                                                                                 CCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATT    <  2:2981082/91‑1
                                                                                                 CCGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATT    <  1:2845952/91‑1
                                                                                                  CGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTT   >  1:4582987/1‑91
                                                                                                  CGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTT   >  2:3441459/1‑91
                                                                                                  CGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTT   >  1:174770/1‑91
                                                                                                  CGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTT   <  1:1414649/91‑1
                                                                                                  CGTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTT   <  1:3786428/91‑1
                                                                                                  CGTAGATACGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTT   <  1:4497552/91‑1
                                                                                                   GTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTTT  >  1:5082945/1‑91
                                                                                                   GTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTTT  <  1:1750301/91‑1
                                                                                                   GTAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTTT  >  1:3489876/1‑91
                                                                                                                                                                                              
ATTTATTATCATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2541719‑2541819
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagaaccgtAGATTCGATTGAGAATCAACGGTTCTTTTTAATCACGGTTTGTTACGAAAATTATTTAAAAAATGATGTAAAACTAGAGAAGATATTTT  <  USA300TCH1516_ALE/2541837‑2541749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.