| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 64 | 674 (0.590) | 16 (0.020) +TTGTTATATTAAGTTTATTATAGCACTTTAAAT |
8/94 | NT | 7.5% | intergenic (–/‑168) | –/repA | –/replication protein A |
| ? | CP000731 | = 27041 | 0 (0.000) | intergenic (‑194/–) | USA300HOU_pUSA300HOUMR0033/– | partitioning protein/– | |||||
‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/1‑64‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTT < CP000731/27041‑27004 ||||||||||||||||||||||||||||||||| gtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCGACTATTACCAGTAGTTGGGGTTTTTGTTATATTAAGTTTATTATAG < 2:566159/87‑1 CTTAATATAACAAAAACCCCAACTACTGGTCATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAcg > 2:4488646/1‑89 CTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGG > 1:1031785/1‑91 AAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCT > 1:4194779/1‑91 CCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCA > 1:128441/1‑91 CCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCA > 2:2763946/1‑91 CCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCA > 2:2763891/1‑91 CAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATCTAGCTTTATCAA > 2:3611261/1‑91 CAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAA > 2:588650/1‑91 CAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAA > 1:1660535/1‑91 AACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAACCTTATAAAAGGGAAAATATAGCTTTATCAAG > 1:5256923/1‑91 AACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAG > 1:3343437/1‑91 ACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAACTAAACTTATAAAAGGGAAAATATAGCTTTATCAAGG > 1:2263587/1‑91 ACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGG > 2:4595697/1‑91 CTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGG > 1:3072702/1‑91 ACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTT > 1:3105407/1‑91 ACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTT > 1:1197517/1‑91 ||||||||||||||||||||||||||||||||| ‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/1‑64‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTT < CP000731/27041‑27004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |