New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 14186290 (1.010)16 (0.060) 14/142 NT 5.5% intergenic (+87/‑563) serS_1/ygaZ Serine‑‑tRNA ligase/Inner membrane protein YgaZ
?USA300TCH1516_ALE = 14200 292 (1.150)intergenic (+101/‑549) serS_1/ygaZ Serine‑‑tRNA ligase/Inner membrane protein YgaZ

Only 100 of 445 total aligned reads displayed.

ATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAAT  >  USA300TCH1516_ALE/14096‑14276
                                                                                          |                                                                                          
ataaaGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGG                                                                                            >  2:2994475‑M1/1‑91 (MQ=255)
   aaGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGa                                                                                         <  2:4944640/91‑1 (MQ=255)
    aGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGAc                                                                                        <  1:1054242/91‑1 (MQ=255)
    aGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGAc                                                                                        >  1:2648492/1‑91 (MQ=255)
    aGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGAc                                                                                        <  2:627042/91‑1 (MQ=255)
     ggCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACg                                                                                       >  1:2858398/1‑91 (MQ=255)
      gCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGa                                                                                      <  1:3973657/91‑1 (MQ=255)
       cTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGaa                                                                                     >  2:4593742/1‑91 (MQ=255)
        tttAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAg                                                                                    >  1:1857947/1‑91 (MQ=255)
        tttAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAg                                                                                    <  1:2276710/91‑1 (MQ=255)
            gCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGcgacagcttcgt                                                                                <  1:1418831‑M1/91‑13 (MQ=255)
            gCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGt                                                                                <  1:1676838/91‑1 (MQ=255)
            gCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGt                                                                                >  1:3563125/1‑91 (MQ=255)
              tACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCg                                                                              <  1:3048811/91‑1 (MQ=255)
               acgaGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGc                                                                             <  1:4251922/88‑1 (MQ=255)
                cAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGcc                                                                            >  1:4205915‑M2/1‑89 (MQ=255)
                cAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGcc                                                                            >  1:1323137‑M2/1‑89 (MQ=255)
                cAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGcc                                                                            >  2:4182174‑M2/1‑89 (MQ=255)
                  aGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGccac                                                                          >  1:510313‑M2/1‑87 (MQ=255)
                  aGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGccac                                                                          >  2:4718037‑M2/1‑87 (MQ=255)
                   gCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGccact                                                                         >  2:5140549‑M2/1‑86 (MQ=255)
                   gCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGccact                                                                         >  1:3829501‑M2/1‑86 (MQ=255)
                      ttAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGccactttt                                                                      <  2:2406436‑M2/91‑9 (MQ=255)
                      ttAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGccactttt                                                                      <  1:2007253‑M2/91‑9 (MQ=255)
                       tAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGccacttttt                                                                     <  2:1810134‑M2/91‑10 (MQ=255)
                         aaaaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACttttttt                                                                   >  1:213318/1‑91 (MQ=255)
                           aaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTtgt                                                                 <  2:2303349/91‑1 (MQ=255)
                               atatatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTg                                                             >  1:1243761/1‑91 (MQ=255)
                               atatatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTg                                                             >  2:1970443/1‑91 (MQ=255)
                               atatatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACATTTTTTGTGCTg                                                             >  2:3623080/1‑91 (MQ=255)
                                 atatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTa                                                           >  1:3649358/1‑91 (MQ=255)
                                  tatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTaa                                                          <  2:848246/91‑1 (MQ=255)
                                  tatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCAACTTTTTTTGTGCTGTaa                                                          >  2:137471/1‑91 (MQ=255)
                                       aCGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAACAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGta                                                     >  2:1145372/1‑91 (MQ=255)
                                       aCGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGta                                                     <  2:2331412/91‑1 (MQ=255)
                                         gTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGtata                                                   <  2:127186/91‑1 (MQ=255)
                                          tataCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTataa                                                  >  1:2404644/1‑91 (MQ=255)
                                           ataCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTataat                                                 <  1:3415260/91‑1 (MQ=255)
                                           ataCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTataat                                                 >  1:5312642/1‑91 (MQ=255)
                                            taCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTataata                                                >  1:3850482/1‑91 (MQ=255)
                                             aCTTAAAGCTAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTTACGAATCTGTCGCTACTTTTTTTGTGCTGTAACAGTATAATAg                                               >  2:1726762/1‑91 (MQ=255)
                                             aCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAg                                               <  1:621113/91‑1 (MQ=255)
                                             aCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAg                                               <  1:3233221/91‑1 (MQ=255)
                                                  aaGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGc                                          >  1:5046614/1‑91 (MQ=255)
                                                    gCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCa                                        >  2:1996605/1‑91 (MQ=255)
                                                    gCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCa                                        >  2:1029222/1‑91 (MQ=255)
                                                     cAAGGGCAAGATACTTTAAATAATATTTTAAGAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCaa                                       <  1:5238077/91‑1 (MQ=255)
                                                       aGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATg                                     >  2:5004179/1‑91 (MQ=255)
                                                       aGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATg                                     <  1:2501398/91‑1 (MQ=255)
                                                        gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTTTTTTGTTTAAGTATAATAGTGAGCCAATGc                                    >  2:4905269/1‑91 (MQ=255)
                                                        gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGCGCCAATGc                                    >  2:1881503/1‑91 (MQ=255)
                                                        gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGc                                    >  2:4255638/1‑91 (MQ=255)
                                                        gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGc                                    >  2:1589985/1‑91 (MQ=255)
                                                        gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTCAGCCAATGc                                    >  2:5359134/1‑91 (MQ=255)
                                                            aaGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACAt                                >  1:5610979/1‑91 (MQ=255)
                                                            aaGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACAt                                <  2:4794818/91‑1 (MQ=255)
                                                             aGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATa                               >  2:785289/1‑91 (MQ=255)
                                                              gATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaa                              >  1:90301/1‑91 (MQ=255)
                                                              gATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaa                              >  2:1497736/1‑91 (MQ=255)
                                                               aTACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaac                             <  1:5444210/91‑1 (MQ=255)
                                                               aTACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaac                             <  1:4912971/91‑1 (MQ=255)
                                                               aTACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaac                             <  1:390226/91‑1 (MQ=255)
                                                                tACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaaca                            <  1:4329621/91‑1 (MQ=255)
                                                                  cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaacaac                          >  2:2153011/1‑91 (MQ=255)
                                                                  cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaacaac                          >  1:694217/1‑91 (MQ=255)
                                                                    ttAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAAcaacaa                        >  1:2194484/1‑91 (MQ=255)
                                                                    ttAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAAcaacaa                        >  1:4865329/1‑91 (MQ=255)
                                                                        ataataTTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATaaa                    <  2:2682482/91‑1 (MQ=255)
                                                                         taataTTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAAt                   >  1:3728438/1‑91 (MQ=255)
                                                                          aataTTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAAtt                  <  2:4053666/91‑1 (MQ=255)
                                                                           atatTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTa                 >  2:3065875/1‑91 (MQ=255)
                                                                           atatTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTa                 >  1:4570800/1‑91 (MQ=255)
                                                                            tatTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTaa                <  1:1911875/91‑1 (MQ=255)
                                                                            tatTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTaa                >  1:5474416/1‑91 (MQ=255)
                                                                              ttttAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGt              <  1:3156150/91‑1 (MQ=255)
                                                                              ttttAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGt              >  1:4544574/1‑91 (MQ=255)
                                                                                ttAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGttt            <  1:4963846/91‑1 (MQ=255)
                                                                                ttAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGttt            >  2:3248763/1‑91 (MQ=255)
                                                                                 tAAAAAGTGGTGACGGAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTtg           <  2:4351232/91‑1 (MQ=255)
                                                                                 tAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTtg           <  2:3563125/91‑1 (MQ=255)
                                                                                  aaaaaGTGGcgacagcttcgtcaccactttttaaaatattatttaaagtctcttgcccttgctttaagtatacgtagatatatacttttta          <  2:5218268‑M1/91‑83 (MQ=255)
                                                                                  aaaaaGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTtgt          <  1:1508396/91‑1 (MQ=255)
                                                                                   aaaaGTGGcgacagcttcgtcaccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaa         <  1:2128551‑M1/91‑84 (MQ=255)
                                                                                   aaaaGTGGcgacagcttcgtcaccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaa         <  2:2891304‑M1/91‑84 (MQ=255)
                                                                                    aaaGTGGcgacagcttcgtcaccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaa        <  2:4014261‑M1/91‑85 (MQ=255)
                                                                                    aaaGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTgg        <  2:3932225/91‑1 (MQ=255)
                                                                                    aaaGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTgg        <  1:786829/91‑1 (MQ=255)
                                                                                    aaaGTGGTGACGAAGCTGTCGCCACTTTTTGTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTgg        <  1:3486739/91‑1 (MQ=255)
                                                                                     aaGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGt       >  1:2792839/1‑91 (MQ=255)
                                                                                      aGTGGcgacagcttcgtcaccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagc      >  2:32116‑M1/1‑5 (MQ=255)
                                                                                      aGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGTGCCAATGCACATAACAACAATAAATTAAGTTTGTGGtt      <  2:280377/91‑1 (MQ=255)
                                                                                       gtggtgACGAAGCTGTCGCCACTTTTTTTTTTCTTTTTAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGttt     >  2:3019777/1‑91 (MQ=255)
                                                                                       gtggtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGttt     >  1:332310/1‑91 (MQ=255)
                                                                                        tggtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTa    >  1:4075212/1‑91 (MQ=255)
                                                                                         ggtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATCGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTaa   >  2:4029761/1‑91 (MQ=255)
                                                                                         ggcgacagcttcgtcaccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttg   >  2:3166500‑M1/1‑2 (MQ=255)
                                                                                          gtgACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgt  <  2:5500634‑M2/91‑77 (MQ=255)
                                                                                          gtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAAt  >  1:3078861/1‑91 (MQ=255)
                                                                                          gtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAAt  <  1:1171804/91‑1 (MQ=255)
                                                                                          gcgacagcttcgtcaccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgt  <  1:1464301‑M1/91‑91 (MQ=255)
                                                                                          |                                                                                          
ATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAAT  >  USA300TCH1516_ALE/14096‑14276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.