| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 36412 = | 191 (0.660) | 15 (0.060) | 9/146 | NT | 7.9% | coding (140/675 nt) | USA300HOU_RS00140 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 76356 | NA (NA) | coding (142/246 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
Only 100 of 389 total aligned reads displayed.
TCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGG > USA300TCH1516_ALE/36322‑36502 | ttggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtcta < 2:4310867‑M1/1‑1 (MQ=255)ttggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtcta < 1:3135982‑M1/1‑1 (MQ=255)ttggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtcta < 1:4095562‑M1/1‑1 (MQ=255)ttggctactatctaagatatgcattgagttatcgcgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtcta < 2:3372846‑M1/1‑1 (MQ=255)tcatcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGa > 2:4805991/1‑91 (MQ=34) tggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctAc < 1:4925941‑M1/2‑1 (MQ=255) tggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctAc < 1:248458‑M1/2‑1 (MQ=255) tggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctAc > 2:2139841‑M1/90‑91 (MQ=255) ggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctAcc > 2:4498771‑M1/89‑91 (MQ=255) ggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctAcc > 1:1751831‑M1/89‑91 (MQ=255) ggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctAcc > 1:3836338‑M1/89‑91 (MQ=255) ggctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctAcc < 1:5554039‑M1/3‑1 (MQ=255) atcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGAcc > 2:2608526/1‑91 (MQ=34) atcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGAcc < 2:526707/91‑1 (MQ=34) gctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCg < 1:1798898‑M1/4‑1 (MQ=255) gctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCg < 2:3217994‑M1/4‑1 (MQ=255) ctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGt > 1:133470‑M1/87‑91 (MQ=255) ctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGt > 1:5515827‑M1/87‑91 (MQ=255) ctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGt > 1:2963643‑M1/87‑91 (MQ=255) ctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGt > 1:2869769‑M1/87‑91 (MQ=255) ctactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGt > 2:4970743‑M1/87‑91 (MQ=255) tactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGtt > 1:1373531‑M1/86‑91 (MQ=255) tactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGtt > 2:3542879‑M1/86‑91 (MQ=255) tactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGtt < 2:556011‑M1/6‑1 (MQ=255) tactatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGtt > 1:3390723‑M1/86‑91 (MQ=255) actatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaactgtctACCGTTg < 2:1774299‑M1/7‑1 (MQ=255) actatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGTTg < 2:3868199‑M1/7‑1 (MQ=255) actatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGTTg > 1:3280525‑M1/85‑91 (MQ=255) actatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtctACCGTTg < 2:2921716‑M1/7‑1 (MQ=255) aTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTg > 1:5257352/1‑91 (MQ=34) tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa > 1:4620296/1‑91 (MQ=34) tatctaagatatgcattgagttatcgtgatatatctgaaatattaagggaacgtggtgtaaacgttcatcattcaacggtagACCGTTGaa > 2:2811711‑M1/83‑91 (MQ=255) gCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatg < 2:1061837/91‑1 (MQ=34) ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatga > 2:5379493/1‑91 (MQ=34) ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatga > 2:2541865/1‑91 (MQ=34) ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatga > 2:619942/1‑91 (MQ=34) ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatga > 1:784809/1‑91 (MQ=34) ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatga > 2:2067862/1‑91 (MQ=34) gTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACg > 1:5079943/1‑91 (MQ=34) taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGt > 2:4609484/1‑91 (MQ=34) tgcattgagctatcgtgatatatctgaaatattaagagaacgtggtgtaaacgttcatcattcaacggtagATCGTTGAATGATGAACGtt > 1:4216629‑M1/72‑91 (MQ=255) taaGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa < 1:2778168/91‑1 (MQ=33) taaGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa < 1:916071/91‑1 (MQ=34) aaGCTTTTTTATTTTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTac > 2:132139/1‑91 (MQ=255) aaGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTac < 1:2369603/91‑1 (MQ=34) aaGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTac > 2:1670193/1‑91 (MQ=34) aGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTaca > 1:5410235/1‑91 (MQ=34) gCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTacac < 2:3921089/91‑1 (MQ=34) gCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTacac < 2:1109724/91‑1 (MQ=33) ttttATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACg > 1:2909394/1‑91 (MQ=34) tttATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGt > 1:1137976/1‑91 (MQ=34) tATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTc > 1:3533092/1‑91 (MQ=34) aTGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTcc < 1:664943/91‑1 (MQ=33) tGCTTTTTCTTCCACATTTGATACAAAATTGGGGCATACTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTccc < 1:4682655/91‑1 (MQ=255) tGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTccc > 1:3722297/1‑91 (MQ=34) tGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTccc < 2:3046864/91‑1 (MQ=33) gggatatatctgaaatatgaagtgaacgtgttgtaaacgttcatcattcaacggtaaACCGTTGAATGATGAACGTTTACACCACGTTccc > 2:3678425‑M1/58‑91 (MQ=255) ggCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTccc < 1:5312651/90‑1 (MQ=18) gCTTTTTCTTCCAAATTTGATACAACATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCt < 1:4061190/91‑1 (MQ=18) gCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCt > 1:2657995/1‑91 (MQ=33) cTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt < 1:4839900/91‑1 (MQ=33) cTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt > 1:4298708/1‑91 (MQ=34) ttttCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTaa > 2:4208885/1‑91 (MQ=34) ttttCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTaa > 1:5050800/1‑91 (MQ=34) ccAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCa < 2:819706/91‑1 (MQ=34) cAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAg > 1:4003542/1‑91 (MQ=33) gATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATc > 1:3612709/1‑91 (MQ=34) aCAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACg < 2:2450927/91‑1 (MQ=32) aCAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACg > 1:1009859/1‑91 (MQ=32) aCAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACg < 2:3722979/91‑1 (MQ=32) cAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGa < 2:1208074/91‑1 (MQ=31) cAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGa < 1:2120412/91‑1 (MQ=31) cAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGa < 2:1864877/91‑1 (MQ=31) cAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGa < 1:1289868/91‑1 (MQ=31) aataTTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGAt < 2:756910/88‑1 (MQ=1) tatTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGtat > 1:565284/1‑91 (MQ=33) cTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCt < 2:2338676/91‑1 (MQ=34) ttGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCtt < 2:2001321/91‑1 (MQ=34) ttGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCtt < 1:1242372/91‑1 (MQ=34) tGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTa < 2:4137405/91‑1 (MQ=33) ccAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAG > 2:945099‑M1/1‑91 (MQ=255) ccAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAG < 2:1611361‑M1/91‑1 (MQ=255) ccAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAG < 1:2197991‑M1/91‑1 (MQ=255) cAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGT > 1:775640‑M1/1‑91 (MQ=255) aCGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAG > 2:196873‑M1/1‑91 (MQ=255) cggtctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATCTTAGATAGTAGc < 1:1058659‑M1/85‑1 (MQ=255) cggtctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATCTTAGATAGTAGc < 2:5148194‑M1/85‑1 (MQ=255) ggtctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGcc < 1:3792244‑M1/86‑1 (MQ=255) ggtctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATCTTAGATAGTAGcc < 1:3007119‑M1/86‑1 (MQ=255) ggtctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATCTTAGATAGTAGcc < 1:707068‑M1/86‑1 (MQ=255) ggtctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATCTTAGATAGTAGcc < 2:2222061‑M1/86‑1 (MQ=255) ggTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCC > 1:5352968‑M1/1‑91 (MQ=255) ggTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCC < 1:1604361‑M1/91‑1 (MQ=255) gtctACCGTTGGATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATCTTAGATAGTAGCCa < 2:4398923‑M1/87‑1 (MQ=255) gtctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATCTTAGATAGTAGCCa < 1:4437002‑M1/87‑1 (MQ=255) gtctACCGTTGAATGATGAACGTTTACACAACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGCATATATTAGATAGTAGCCa < 1:5186743‑M1/87‑1 (MQ=255) tctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCaa < 1:3878320‑M1/88‑1 (MQ=255) tAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCaa > 1:4551338/1‑91 (MQ=34) ctACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAAc < 1:2289008‑M1/89‑1 (MQ=255) gACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACg < 1:1449796‑M2/91‑2 (MQ=255) | TCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGG > USA300TCH1516_ALE/36322‑36502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |