New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 42564 =341 (1.190)16 (0.070)
+TACATTATAAAATACATATC
8/120 NT 6.7% coding (1402/1524 nt) USA300TCH1516_00035 hypothetical protein
?USA300TCH1516_ALE = 2479065 251 (0.870)intergenic (+21/+119) USA300HOU_RS12765/hrtA_2 hypothetical protein/Putative hemin import ATP‑binding protein HrtA

Only 100 of 392 total aligned reads displayed.

GGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGGACAGA  >  USA300TCH1516_ALE/42474‑42651
                                                                                          |                                                                                       
   aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc                                                                                      <  2:4557292/91‑1 (MQ=255)
     aTAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTc                                                                                    >  2:1491316/1‑91 (MQ=255)
      tAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCg                                                                                   >  2:5329026/1‑91 (MQ=255)
       aaaGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGt                                                                                  <  2:876072/91‑1 (MQ=255)
         aGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTg                                                                                <  2:1251426/91‑1 (MQ=255)
            tCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGc                                                                             <  2:3202936/91‑1 (MQ=255)
             cTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGct                                                                            <  1:3259144/91‑1 (MQ=255)
             cTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGct                                                                            <  1:3070298/91‑1 (MQ=255)
              ttGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                                           <  2:5082019/91‑1 (MQ=255)
              ttGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                                           >  2:3805868/1‑91 (MQ=255)
              ttGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                                           <  2:1794100/91‑1 (MQ=255)
               tGGATAAGTTAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                                          <  2:587363/91‑1 (MQ=255)
               tGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                                          <  1:3583214/91‑1 (MQ=255)
                ggATAAGTGAAAAAAGACCATTTCTATTGATCTCATATGGGAATCGTCTTGTTTATAAATTTTTCGCTCATTTCCAGCTCGTTGGgctgct                                                                         >  2:3430995/1‑91 (MQ=255)
                ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTTTTTATTTTCAGCTCGTTGAGctact                                                                         >  2:3897767/1‑91 (MQ=255)
                ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                                         <  1:370715/91‑1 (MQ=255)
                   tAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTactact                                                                      >  2:4108931/1‑91 (MQ=255)
                   tAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTactact                                                                      <  1:1873392/91‑1 (MQ=255)
                   tAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTactact                                                                      <  2:2889180/91‑1 (MQ=255)
                    aaGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACtt                                                                     >  1:2912583/1‑91 (MQ=255)
                       tGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc                                                                  <  2:22564/91‑1 (MQ=255)
                       tGAAAAAAGACAATCTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc                                                                  <  1:5176770/91‑1 (MQ=255)
                           aaaaGACAATTTCTATTGATATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                              <  1:4330937/91‑1 (MQ=255)
                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                              <  2:1133301/91‑1 (MQ=255)
                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                              <  1:80628/91‑1 (MQ=255)
                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTGATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                              <  1:5491952/91‑1 (MQ=255)
                            aatgACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtata                                                             <  2:1552683/88‑1 (MQ=255)
                            aaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtata                                                             <  1:5639581/91‑1 (MQ=255)
                             aaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTatat                                                            >  1:1104077/1‑91 (MQ=255)
                              aGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATAtt                                                           <  1:4635067/91‑1 (MQ=255)
                              aGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATAtt                                                           <  2:3468827/91‑1 (MQ=255)
                              aGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATAtt                                                           >  1:3678637/1‑91 (MQ=255)
                              aGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATAtt                                                           <  2:1923822/91‑1 (MQ=255)
                               gACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                                          >  1:3998032/1‑91 (MQ=255)
                                aCAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                                         >  1:2086774/1‑91 (MQ=255)
                                 cAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAg                                                        <  1:1273905/91‑1 (MQ=255)
                                  atttctatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGt                                                       <  2:4970243‑M1/35‑1 (MQ=255)
                                  aaTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGt                                                       >  2:3731976/1‑91 (MQ=255)
                                  aaTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGt                                                       >  1:2523766/1‑91 (MQ=255)
                                  aaTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGt                                                       >  2:5157122/1‑91 (MQ=255)
                                  aaTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGt                                                       >  1:5339952/1‑91 (MQ=255)
                                   aTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTg                                                      <  1:3215013/91‑1 (MQ=255)
                                   aTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTg                                                      >  1:3044701/1‑91 (MQ=255)
                                   aTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTg                                                      >  2:2174245/1‑91 (MQ=255)
                                   aTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATGAAGTg                                                      <  2:5529853/91‑1 (MQ=255)
                                    tttCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGc                                                     >  1:4999993/1‑91 (MQ=255)
                                    tttCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGc                                                     <  2:3605024/91‑1 (MQ=255)
                                     ttCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGcc                                                    >  1:3088740/1‑91 (MQ=255)
                                     tccatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGcc                                                    <  2:4620899‑M1/38‑1 (MQ=255)
                                      tCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCa                                                   <  2:340506/91‑1 (MQ=255)
                                      ctatcaaataattaatagaaatcagctttttttttttttattttataatgtaCAGCTCGTTGAGTTGCTATTTTCCTTATATTAAGTgcct                                                   <  2:251460‑M1/39‑2 (MQ=255)
                                      ctatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCa                                                   <  2:2036271‑M1/39‑1 (MQ=255)
                                        atcaaataaataatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAtt                                                 <  1:5281400‑M1/41‑1 (MQ=255)
                                         aTTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTa                                                >  1:4458492/1‑91 (MQ=255)
                                             aaaTAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATAc                                            <  2:4904665/91‑1 (MQ=255)
                                                taataTAGAACTTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACaaa                                         <  2:4483273/91‑1 (MQ=255)
                                                  atatAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAAc                                       >  1:3426400/1‑91 (MQ=255)
                                                    ataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCa                                     >  1:870954/1‑91 (MQ=255)
                                                    ataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCa                                     <  1:2442604/91‑1 (MQ=255)
                                                     taGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                                    <  2:5382187/91‑1 (MQ=255)
                                                     taGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                                    >  1:5057275/1‑91 (MQ=255)
                                                     taGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                                    >  2:23893/1‑91 (MQ=255)
                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                   >  2:2725558/1‑91 (MQ=255)
                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                   >  1:1665803/1‑91 (MQ=255)
                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                   <  1:4416827/91‑1 (MQ=255)
                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                   >  1:1616275/1‑91 (MQ=255)
                                                      aGAAATTGTCTCTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                   >  2:5609106/1‑91 (MQ=255)
                                                       gAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGt                                  >  2:3935009/1‑91 (MQ=255)
                                                       gAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGt                                  <  1:1195860/91‑1 (MQ=255)
                                                        aaaTTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGtt                                 <  2:4211869/91‑1 (MQ=255)
                                                        aaaTTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGtt                                 <  1:2260857/91‑1 (MQ=255)
                                                         aaTTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTtc                                <  1:2215209/91‑1 (MQ=255)
                                                            tGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTctct                             <  1:3465845/91‑1 (MQ=255)
                                                             gTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt                            >  2:2683494/1‑91 (MQ=255)
                                                               gttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt                          <  1:3340377/90‑1 (MQ=255)
                                                               cTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt                          >  1:4748585/1‑91 (MQ=255)
                                                               cTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt                          <  1:1454490/91‑1 (MQ=255)
                                                               cTTTTTTATAAATTTTTTGAGTATTTTCAGCTCGTTGAGCTACTGCTTTTCTTATACTAAGTGCCCTTAATACAAAACCAAGTTCTCtttt                          <  2:4731286/91‑1 (MQ=255)
                                                                 tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa                        <  1:4060208/91‑1 (MQ=255)
                                                                 tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa                        <  2:2825298/91‑1 (MQ=255)
                                                                  ttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGAc                       <  2:842159/91‑1 (MQ=255)
                                                                   tttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACt                      >  1:1031032/1‑91 (MQ=255)
                                                                     tataAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACttt                    >  1:4943553/1‑91 (MQ=255)
                                                                        aaaTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTAtt                 <  2:3090492/91‑1 (MQ=255)
                                                                        aaaTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTAtt                 <  1:3782793/91‑1 (MQ=255)
                                                                         aaTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTg                >  2:4374523/1‑91 (MQ=255)
                                                                          aTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGa               >  1:4211382/1‑91 (MQ=255)
                                                                          aTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGa               >  2:3693242/1‑91 (MQ=255)
                                                                          aTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGa               <  1:2770951/91‑1 (MQ=255)
                                                                           ttttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAg              <  2:1697541/91‑1 (MQ=255)
                                                                           ttttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAg              <  1:952699/91‑1 (MQ=255)
                                                                             ttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTc            <  2:921443/91‑1 (MQ=255)
                                                                               ttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCt          >  2:3032569/1‑91 (MQ=255)
                                                                               ttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCt          <  2:19933/91‑1 (MQ=255)
                                                                               ttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCt          >  1:55465/1‑91 (MQ=255)
                                                                                 tattattTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCg        <  2:4039901/90‑1 (MQ=255)
                                                                                 gATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCg        >  2:1382332/1‑91 (MQ=255)
                                                                                   ttattTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGga      >  1:2993413/1‑91 (MQ=255)
                                                                                       tttCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGgacaga  <  1:719469/91‑1 (MQ=255)
                                                                                       tttCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGgacaga  <  1:4873080/91‑1 (MQ=255)
                                                                                          |                                                                                       
GGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGGACAGA  >  USA300TCH1516_ALE/42474‑42651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.