New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 127978 | 302 (1.050) | 16 (0.060) | 10/144 | NT | 5.3% | intergenic (+198/+131) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
? | USA300TCH1516_ALE | = 128000 | 301 (1.170) | intergenic (+220/+109) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
Only 100 of 446 total aligned reads displayed.
ATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGG > USA300TCH1516_ALE/127888‑128068 | agaatAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACt < 2:5313164/87‑1 (MQ=255) gCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTg > 1:4171477/1‑91 (MQ=255) atcTAAAAATGTCATATATGTAAGCAGAGTAGAATGTGTTGAGGCGATTCAGAAGTTGTCTAGAAAAGTAAGTAAAATAAAAAATGCACTg < 2:134506/89‑1 (MQ=255) ccTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGa > 2:1615199/1‑91 (MQ=255) ccTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGa < 2:2819592/91‑1 (MQ=255) ccTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGa < 2:3713976/91‑1 (MQ=255) aaaaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaa < 1:3139711‑M1/91‑7 (MQ=255) aaaaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGca < 1:3609640/91‑1 (MQ=255) aaaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAATAAAATAAAAAATGCACTGAGcaa < 2:3473715/91‑1 (MQ=255) aaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGcaac < 2:3000393/91‑1 (MQ=255) aaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGcaac < 2:1728076/91‑1 (MQ=255) aaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGcaac > 1:4068695/1‑91 (MQ=255) aaTGTCATATATGTAGTCAGAGTAGAAAGTATTGAAGCGTTTCATAAGTTGTTTAGAAAAGTAAGAAAAAAAAAAAATGCACTGAGcaaca < 2:4341438/91‑1 (MQ=255) gTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACaaaa > 2:3804183/1‑91 (MQ=255) gTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACaaaa > 1:1362814/1‑91 (MQ=255) tCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAg < 2:3390050/91‑1 (MQ=255) cATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGa > 1:1920552/1‑91 (MQ=255) cATATATGTAATCAGAGTAGAAAGTGTTAAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGa < 1:1770780/91‑1 (MQ=255) tatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgt < 1:4025157‑M1/91‑17 (MQ=255) tatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATg < 2:4024695/91‑1 (MQ=255) tatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATg > 1:3237746/1‑91 (MQ=255) tGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGc < 1:3793128/91‑1 (MQ=255) tGTAATCAGAGTAGAAAGTGTTGAGGCGATTCAGAAGTTGTTTAGAAAAGAAAAAAAAAAAAAAAATGCACTGAGCAACAAAAGATGTTGc < 2:4274822/91‑1 (MQ=255) agTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGAAAAAAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGc < 2:5213463/90‑1 (MQ=255) gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCt < 2:4388737/91‑1 (MQ=255) gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCt < 1:1014554/91‑1 (MQ=255) gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCt < 1:1602930/91‑1 (MQ=255) gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAACTAGTTTAGAAAAGTAAGTAAAATAAAAAATGAAAAAAAAAAAAAAAGATGTTGCt < 2:2380676/91‑1 (MQ=255) aagcAGAGTATAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGAAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCg < 2:4483603/88‑1 (MQ=255) aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgt < 1:1958697‑M2/91‑3 (MQ=255) aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgt < 2:351213‑M2/91‑3 (MQ=255) aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgt < 1:5315744‑M2/91‑3 (MQ=255) tCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtg > 2:1271598‑M2/1‑88 (MQ=255) gagTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcat < 2:3552941‑M2/91‑7 (MQ=255) agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctcagtgcatt < 1:4533501‑M1/91‑30 (MQ=255) agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcatt < 1:3646327‑M2/91‑8 (MQ=255) agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcatt < 2:1008203‑M2/91‑8 (MQ=255) gTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctcagtgcattt < 2:703639‑M1/91‑31 (MQ=255) gAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAga < 2:1522418/91‑1 (MQ=255) aaGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatg > 2:2143822/1‑91 (MQ=255) gtgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatgat > 2:247843/1‑91 (MQ=255) tgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGAtt < 2:3190499/91‑1 (MQ=255) tgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGAtt < 2:1578164/91‑1 (MQ=255) gtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTc < 2:1958697/91‑1 (MQ=255) ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCt < 1:580360/91‑1 (MQ=255) tGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAACTAAAATAAAAAATGCACTGAGCAACATAAGATGTTGCTCGTGCATTTAGATGATTCtt < 1:5527342/91‑1 (MQ=255) gcggCGTTTCCGCCGTTGTTTAGAAAAGTAAGTAAAATACCCAATGCCCTGAGCAACAAAAGCTGTTGCTCGTGCACTTAGCTGCTTCTTa > 2:2864069/3‑91 (MQ=255) aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAt > 2:1062158/1‑91 (MQ=255) ggCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAtt < 1:2091005/91‑2 (MQ=255) gCGTTTCAGAAGTTGTTTAGCAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCa > 2:2749226/1‑91 (MQ=255) gTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCAtt > 2:2092095/1‑91 (MQ=255) ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTc > 2:1195196/1‑91 (MQ=255) tCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCa < 1:4799574/91‑1 (MQ=255) cAGAAGTTGTTTCGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCaa < 2:3612609/91‑1 (MQ=255) cAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAGTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCaa > 2:3342378/1‑91 (MQ=255) gAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAAt < 2:2285616/91‑1 (MQ=255) gttgttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAg < 1:2846689/91‑1 (MQ=255) ttgttTAGAAAAGTAAGTAAGATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGa > 1:5151963/1‑91 (MQ=255) tgttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGaa < 1:3193260/91‑1 (MQ=255) gttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAt > 1:131030/1‑91 (MQ=255) gttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAt < 2:4189024/91‑1 (MQ=255) ttAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgt < 1:3397911/91‑1 (MQ=255) tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg < 1:2936789/91‑1 (MQ=255) tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg < 1:2688084/91‑1 (MQ=255) tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg > 2:4681514/1‑91 (MQ=255) aaaGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTaa > 2:4908133/1‑91 (MQ=255) aagtaagtAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAAt < 1:4317340/91‑1 (MQ=255) agtaagtaAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATc < 1:856289/91‑1 (MQ=255) gtaagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCa > 1:4931648/1‑91 (MQ=255) gtaagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCa > 2:5544858/1‑91 (MQ=255) taagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCaa < 2:4998796/91‑1 (MQ=255) agtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACg < 1:3774023/91‑1 (MQ=255) gtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaa < 1:3848914‑M2/91‑52 (MQ=255) taaaataaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGta < 1:4606598/91‑1 (MQ=255) taaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATaa < 1:1124563/91‑1 (MQ=255) aaaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAg < 1:2582445/91‑1 (MQ=255) aaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt > 1:742080/1‑91 (MQ=255) aaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt > 2:1398542/1‑91 (MQ=255) aaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAGGAATGTGTTAATCAACGTATATAAGTTa > 2:4791767/1‑91 (MQ=255) aaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTa < 2:5600343/91‑1 (MQ=255) aaTGCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctact < 2:5429160‑M1/91‑85 (MQ=255) aaTGCACTGAGCATCAAAAGATGTTGAGCGTGCATTTATATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa < 2:1980230/91‑1 (MQ=255) aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa < 1:2171970/91‑1 (MQ=255) aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa < 2:313894/91‑1 (MQ=255) aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa < 2:2608994/91‑1 (MQ=255) aTGCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactc < 1:702980‑M1/91‑86 (MQ=255) aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa < 1:5570715/91‑1 (MQ=255) aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa < 1:4413483/91‑1 (MQ=255) aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa < 1:351213/91‑1 (MQ=255) gCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctg < 1:303249‑M1/91‑88 (MQ=255) gCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt > 1:1069068/1‑91 (MQ=255) cACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAtt > 2:1421956/1‑91 (MQ=255) cACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAtt > 2:791990/1‑91 (MQ=255) aCgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgat < 1:42137‑M1/91‑90 (MQ=255) aCgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgat > 2:921638‑M1/1‑2 (MQ=255) aCTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTg > 1:2386144/1‑91 (MQ=255) cgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgatt < 2:5397564‑M1/91‑91 (MQ=255) cTGAGCAACAAAAGATGTTGCTCgtgcattttttattttactttcttttctaaacaactttttaaacgcctcatcactttctactctgatt < 2:611555‑M2/91‑69 (MQ=255) cTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgatt < 2:3015356‑M2/91‑69 (MQ=255) cTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTgg > 1:5269763/1‑91 (MQ=255) | ATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGG > USA300TCH1516_ALE/127888‑128068 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |