New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 127978302 (1.050)16 (0.060) 10/144 NT 5.3% intergenic (+198/+131) lctP_1/spa L‑lactate permease/Immunoglobulin G‑binding protein A
?USA300TCH1516_ALE = 128000 301 (1.170)intergenic (+220/+109) lctP_1/spa L‑lactate permease/Immunoglobulin G‑binding protein A

Only 100 of 446 total aligned reads displayed.

ATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGG  >  USA300TCH1516_ALE/127888‑128068
                                                                                          |                                                                                          
 agaatAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACt                                                                                           <  2:5313164/87‑1 (MQ=255)
  gCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTg                                                                                          >  1:4171477/1‑91 (MQ=255)
  atcTAAAAATGTCATATATGTAAGCAGAGTAGAATGTGTTGAGGCGATTCAGAAGTTGTCTAGAAAAGTAAGTAAAATAAAAAATGCACTg                                                                                          <  2:134506/89‑1 (MQ=255)
   ccTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGa                                                                                         >  2:1615199/1‑91 (MQ=255)
   ccTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGa                                                                                         <  2:2819592/91‑1 (MQ=255)
   ccTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGa                                                                                         <  2:3713976/91‑1 (MQ=255)
      aaaaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaa                                                                                      <  1:3139711‑M1/91‑7 (MQ=255)
      aaaaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGca                                                                                      <  1:3609640/91‑1 (MQ=255)
       aaaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAATAAAATAAAAAATGCACTGAGcaa                                                                                     <  2:3473715/91‑1 (MQ=255)
        aaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGcaac                                                                                    <  2:3000393/91‑1 (MQ=255)
        aaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGcaac                                                                                    <  2:1728076/91‑1 (MQ=255)
        aaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGcaac                                                                                    >  1:4068695/1‑91 (MQ=255)
         aaTGTCATATATGTAGTCAGAGTAGAAAGTATTGAAGCGTTTCATAAGTTGTTTAGAAAAGTAAGAAAAAAAAAAAATGCACTGAGcaaca                                                                                   <  2:4341438/91‑1 (MQ=255)
            gTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACaaaa                                                                                >  2:3804183/1‑91 (MQ=255)
            gTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACaaaa                                                                                >  1:1362814/1‑91 (MQ=255)
             tCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAg                                                                               <  2:3390050/91‑1 (MQ=255)
              cATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGa                                                                              >  1:1920552/1‑91 (MQ=255)
              cATATATGTAATCAGAGTAGAAAGTGTTAAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGa                                                                              <  1:1770780/91‑1 (MQ=255)
                tatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgt                                                                            <  1:4025157‑M1/91‑17 (MQ=255)
                tatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATg                                                                            <  2:4024695/91‑1 (MQ=255)
                tatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATg                                                                            >  1:3237746/1‑91 (MQ=255)
                    tGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGc                                                                        <  1:3793128/91‑1 (MQ=255)
                    tGTAATCAGAGTAGAAAGTGTTGAGGCGATTCAGAAGTTGTTTAGAAAAGAAAAAAAAAAAAAAAATGCACTGAGCAACAAAAGATGTTGc                                                                        <  2:4274822/91‑1 (MQ=255)
                    agTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGAAAAAAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGc                                                                        <  2:5213463/90‑1 (MQ=255)
                     gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCt                                                                       <  2:4388737/91‑1 (MQ=255)
                     gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCt                                                                       <  1:1014554/91‑1 (MQ=255)
                     gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCt                                                                       <  1:1602930/91‑1 (MQ=255)
                     gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAACTAGTTTAGAAAAGTAAGTAAAATAAAAAATGAAAAAAAAAAAAAAAGATGTTGCt                                                                       <  2:2380676/91‑1 (MQ=255)
                       aagcAGAGTATAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGAAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCg                                                                     <  2:4483603/88‑1 (MQ=255)
                        aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgt                                                                    <  1:1958697‑M2/91‑3 (MQ=255)
                        aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgt                                                                    <  2:351213‑M2/91‑3 (MQ=255)
                        aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgt                                                                    <  1:5315744‑M2/91‑3 (MQ=255)
                         tCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtg                                                                   >  2:1271598‑M2/1‑88 (MQ=255)
                            gagTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcat                                                                <  2:3552941‑M2/91‑7 (MQ=255)
                             agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctcagtgcatt                                                               <  1:4533501‑M1/91‑30 (MQ=255)
                             agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcatt                                                               <  1:3646327‑M2/91‑8 (MQ=255)
                             agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcatt                                                               <  2:1008203‑M2/91‑8 (MQ=255)
                              gTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctcagtgcattt                                                              <  2:703639‑M1/91‑31 (MQ=255)
                                 gAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAga                                                           <  2:1522418/91‑1 (MQ=255)
                                   aaGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatg                                                         >  2:2143822/1‑91 (MQ=255)
                                     gtgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatgat                                                       >  2:247843/1‑91 (MQ=255)
                                      tgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGAtt                                                      <  2:3190499/91‑1 (MQ=255)
                                      tgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGAtt                                                      <  2:1578164/91‑1 (MQ=255)
                                       gtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTc                                                     <  2:1958697/91‑1 (MQ=255)
                                        ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCt                                                    <  1:580360/91‑1 (MQ=255)
                                         tGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAACTAAAATAAAAAATGCACTGAGCAACATAAGATGTTGCTCGTGCATTTAGATGATTCtt                                                   <  1:5527342/91‑1 (MQ=255)
                                          gcggCGTTTCCGCCGTTGTTTAGAAAAGTAAGTAAAATACCCAATGCCCTGAGCAACAAAAGCTGTTGCTCGTGCACTTAGCTGCTTCTTa                                                  >  2:2864069/3‑91 (MQ=255)
                                           aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAt                                                 >  2:1062158/1‑91 (MQ=255)
                                            ggCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAtt                                                <  1:2091005/91‑2 (MQ=255)
                                             gCGTTTCAGAAGTTGTTTAGCAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCa                                               >  2:2749226/1‑91 (MQ=255)
                                               gTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCAtt                                             >  2:2092095/1‑91 (MQ=255)
                                                 ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTc                                           >  2:1195196/1‑91 (MQ=255)
                                                  tCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCa                                          <  1:4799574/91‑1 (MQ=255)
                                                   cAGAAGTTGTTTCGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCaa                                         <  2:3612609/91‑1 (MQ=255)
                                                   cAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAGTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCaa                                         >  2:3342378/1‑91 (MQ=255)
                                                     gAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAAt                                       <  2:2285616/91‑1 (MQ=255)
                                                        gttgttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAg                                    <  1:2846689/91‑1 (MQ=255)
                                                         ttgttTAGAAAAGTAAGTAAGATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGa                                   >  1:5151963/1‑91 (MQ=255)
                                                          tgttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGaa                                  <  1:3193260/91‑1 (MQ=255)
                                                           gttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAt                                 >  1:131030/1‑91 (MQ=255)
                                                           gttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAt                                 <  2:4189024/91‑1 (MQ=255)
                                                             ttAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgt                               <  1:3397911/91‑1 (MQ=255)
                                                              tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                              <  1:2936789/91‑1 (MQ=255)
                                                              tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                              <  1:2688084/91‑1 (MQ=255)
                                                              tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                              >  2:4681514/1‑91 (MQ=255)
                                                                  aaaGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTaa                          >  2:4908133/1‑91 (MQ=255)
                                                                   aagtaagtAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAAt                         <  1:4317340/91‑1 (MQ=255)
                                                                    agtaagtaAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATc                        <  1:856289/91‑1 (MQ=255)
                                                                     gtaagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCa                       >  1:4931648/1‑91 (MQ=255)
                                                                     gtaagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCa                       >  2:5544858/1‑91 (MQ=255)
                                                                      taagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCaa                      <  2:4998796/91‑1 (MQ=255)
                                                                        agtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACg                    <  1:3774023/91‑1 (MQ=255)
                                                                         gtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaa                   <  1:3848914‑M2/91‑52 (MQ=255)
                                                                          taaaataaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGta                  <  1:4606598/91‑1 (MQ=255)
                                                                               taaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATaa             <  1:1124563/91‑1 (MQ=255)
                                                                                aaaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAg            <  1:2582445/91‑1 (MQ=255)
                                                                                 aaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt           >  1:742080/1‑91 (MQ=255)
                                                                                 aaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt           >  2:1398542/1‑91 (MQ=255)
                                                                                   aaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAGGAATGTGTTAATCAACGTATATAAGTTa         >  2:4791767/1‑91 (MQ=255)
                                                                                   aaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTa         <  2:5600343/91‑1 (MQ=255)
                                                                                    aaTGCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctact        <  2:5429160‑M1/91‑85 (MQ=255)
                                                                                    aaTGCACTGAGCATCAAAAGATGTTGAGCGTGCATTTATATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa        <  2:1980230/91‑1 (MQ=255)
                                                                                    aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa        <  1:2171970/91‑1 (MQ=255)
                                                                                    aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa        <  2:313894/91‑1 (MQ=255)
                                                                                    aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa        <  2:2608994/91‑1 (MQ=255)
                                                                                     aTGCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactc       <  1:702980‑M1/91‑86 (MQ=255)
                                                                                     aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa       <  1:5570715/91‑1 (MQ=255)
                                                                                     aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa       <  1:4413483/91‑1 (MQ=255)
                                                                                     aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa       <  1:351213/91‑1 (MQ=255)
                                                                                       gCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctg     <  1:303249‑M1/91‑88 (MQ=255)
                                                                                       gCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt     >  1:1069068/1‑91 (MQ=255)
                                                                                        cACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAtt    >  2:1421956/1‑91 (MQ=255)
                                                                                        cACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAtt    >  2:791990/1‑91 (MQ=255)
                                                                                         aCgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgat   <  1:42137‑M1/91‑90 (MQ=255)
                                                                                         aCgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgat   >  2:921638‑M1/1‑2 (MQ=255)
                                                                                         aCTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTg   >  1:2386144/1‑91 (MQ=255)
                                                                                          cgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgatt  <  2:5397564‑M1/91‑91 (MQ=255)
                                                                                          cTGAGCAACAAAAGATGTTGCTCgtgcattttttattttactttcttttctaaacaactttttaaacgcctcatcactttctactctgatt  <  2:611555‑M2/91‑69 (MQ=255)
                                                                                          cTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgatt  <  2:3015356‑M2/91‑69 (MQ=255)
                                                                                          cTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTgg  >  1:5269763/1‑91 (MQ=255)
                                                                                          |                                                                                          
ATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGG  >  USA300TCH1516_ALE/127888‑128068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.