New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1120568239 (0.830)15 (0.060) 10/148 NT 6.1% coding (56/276 nt) USA300HOU_RS05550 hypothetical protein
?USA300TCH1516_ALE = 1120580 243 (0.920)coding (68/276 nt) USA300HOU_RS05550 hypothetical protein

Only 100 of 350 total aligned reads displayed.

AAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAAT  >  USA300TCH1516_ALE/1120478‑1120658
                                                                                          |                                                                                          
aaGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC                                                                                            <  1:1159557‑M1/91‑1 (MQ=255)
   aCTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtga                                                                                         <  2:4617723/91‑1 (MQ=255)
   aCTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtga                                                                                         <  1:5285164/91‑1 (MQ=255)
   aCTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtga                                                                                         <  1:4339360/91‑1 (MQ=255)
   aCTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtga                                                                                         <  1:91974/91‑1 (MQ=255)
   aCTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtga                                                                                         <  1:3423487/91‑1 (MQ=255)
    cTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtgat                                                                                        <  1:1965567/91‑1 (MQ=255)
     ttGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtgatg                                                                                       <  1:508624/91‑1 (MQ=255)
     ttGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtgatg                                                                                       <  1:2728044/91‑1 (MQ=255)
      tGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtgatga                                                                                      <  2:2069463/91‑1 (MQ=255)
      tGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCtgatga                                                                                      >  1:4056922/1‑91 (MQ=255)
       gagaATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGaa                                                                                     >  2:4973887/1‑91 (MQ=255)
       gagaATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGaa                                                                                     >  1:4528462/1‑91 (MQ=255)
       gagaATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGaa                                                                                     <  2:3998786/91‑1 (MQ=255)
         gaATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGAAAAAAAGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAAt                                                                                   <  2:1647000/91‑1 (MQ=255)
          aaTTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCaagatttcat                                                                                  <  1:4642271‑M1/91‑11 (MQ=255)
          aaTTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATc                                                                                  >  1:3247987/1‑91 (MQ=255)
            tttATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCaagatttcatca                                                                                <  2:3411455‑M1/91‑13 (MQ=255)
             ttATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTg                                                                               <  1:4497352‑M2/91‑2 (MQ=255)
                tataGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTgcat                                                                            <  2:3779994‑M2/91‑5 (MQ=255)
                tataGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTgcat                                                                            <  1:4425554‑M2/91‑5 (MQ=255)
                 ataGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTgcatc                                                                           >  1:2742076‑M2/1‑86 (MQ=255)
                   agagGGGGAGCGTGTCATGGCGAAACACGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTg                                                                         <  1:252524/91‑1 (MQ=255)
                    gagGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGa                                                                        <  1:3639592/91‑1 (MQ=255)
                     agGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGAt                                                                       <  1:1423795/91‑1 (MQ=255)
                      gggggAGCGTGTCATGGGGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGAtt                                                                      <  2:734980/91‑1 (MQ=255)
                      gggggAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGAtt                                                                      >  1:4789872/1‑91 (MQ=255)
                      gggggAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGAtt                                                                      <  1:2463161/91‑1 (MQ=255)
                       ggggAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCaagatttcatcagcatctttagt                                                                     <  1:1001349‑M1/91‑24 (MQ=255)
                       ggggAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTa                                                                     >  2:5267116/1‑91 (MQ=255)
                            gCGTGTCATGGCGAAACAAGCAACAATGAAACATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGtt                                                                >  1:5527473/1‑91 (MQ=255)
                             cGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTc                                                               >  1:3832717/1‑91 (MQ=255)
                              gtgtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCa                                                              >  2:4893154/1‑91 (MQ=255)
                                gtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAAc                                                            >  2:5296594/1‑91 (MQ=255)
                                gtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAAc                                                            <  2:3624231/91‑1 (MQ=255)
                                gtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAAc                                                            <  1:1271097/91‑1 (MQ=255)
                                 tCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACt                                                           <  1:290832/91‑1 (MQ=255)
                                  cATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTa                                                          >  2:858089/1‑91 (MQ=255)
                                   aTGGCGAAACAAAAAAAAAAGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAg                                                         <  2:2248352/91‑1 (MQ=255)
                                    tGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGAGTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGa                                                        <  1:4248796/91‑1 (MQ=255)
                                    tGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGa                                                        <  1:955573/91‑1 (MQ=255)
                                        gAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAt                                                    <  1:2301114/91‑1 (MQ=255)
                                        gAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAt                                                    >  2:3634576/1‑91 (MQ=255)
                                         aaaCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAtt                                                   <  1:1036921/91‑1 (MQ=255)
                                         aaaCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAtt                                                   <  2:681902/91‑1 (MQ=255)
                                         aaaCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAtt                                                   <  1:2560456/91‑1 (MQ=255)
                                          aaCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAttt                                                  <  2:4860093/91‑1 (MQ=255)
                                          aaCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAttt                                                  >  1:3129824/1‑91 (MQ=255)
                                           aCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTa                                                 <  1:604395/91‑1 (MQ=255)
                                            cAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAACGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTaa                                                >  2:5234148/1‑91 (MQ=255)
                                            cAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTaa                                                >  1:4099204/1‑91 (MQ=255)
                                              aGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACa                                              >  1:2883918/1‑91 (MQ=255)
                                              aGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACa                                              >  2:803295/1‑91 (MQ=255)
                                               gCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACAt                                             <  1:4955645/91‑1 (MQ=255)
                                                   caaTGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTAcc                                         >  2:5334815/1‑91 (MQ=255)
                                                   caaTGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGACTAAAGCTCAACTCGATAATTTAACATTccc                                         >  2:3188300/1‑91 (MQ=255)
                                                    aaTGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCt                                        >  2:2999518/1‑91 (MQ=255)
                                                      tGAAAAATGCAGCTTTGAAACATTTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTc                                      >  2:4292952/1‑91 (MQ=255)
                                                      tGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTc                                      <  2:1889104/91‑1 (MQ=255)
                                                       gAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCa                                     <  1:2796929/91‑1 (MQ=255)
                                                       gAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCa                                     <  1:5148087/91‑1 (MQ=255)
                                                         aaaaTGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATg                                   <  2:2750673/91‑1 (MQ=255)
                                                          aaaTGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGc                                  >  1:675056/1‑91 (MQ=255)
                                                          aaaTGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCAGCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGc                                  >  1:5495738/1‑91 (MQ=255)
                                                             tGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCa                               >  2:5053864/1‑91 (MQ=255)
                                                               cAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCAtt                             >  1:2122578/1‑91 (MQ=255)
                                                               cAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCAtt                             >  1:3980992/1‑91 (MQ=255)
                                                                aGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATta                            <  1:786361/91‑1 (MQ=255)
                                                                aGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATta                            >  2:246750/1‑91 (MQ=255)
                                                                aGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATta                            >  1:884731/1‑91 (MQ=255)
                                                                 gCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATtat                           <  2:4572131/91‑1 (MQ=255)
                                                                 gCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATtat                           <  2:417497/91‑1 (MQ=255)
                                                                  cTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATtata                          <  1:1724808/91‑1 (MQ=255)
                                                                    ttGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATg                        <  2:5579571/91‑1 (MQ=255)
                                                                      gAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATgaa                      <  1:574814/91‑1 (MQ=255)
                                                                      gAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATgaa                      <  2:3928091/91‑1 (MQ=255)
                                                                       aaaCAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATgaag                     >  2:5392623/1‑91 (MQ=255)
                                                                       aaaCAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATgaag                     <  2:1235573/91‑1 (MQ=255)
                                                                           aaTTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGt                 <  1:1536467/91‑1 (MQ=255)
                                                                            aTTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTa                >  1:4195550/1‑91 (MQ=255)
                                                                             ttGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTAc               <  2:1483943/91‑1 (MQ=255)
                                                                             ttGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTAc               <  2:213481/91‑1 (MQ=255)
                                                                             ttGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTAc               >  1:181375/1‑91 (MQ=255)
                                                                                    aaGATGCTGATGAAATCTTgcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctccccctct        <  1:1871793‑M2/91‑73 (MQ=255)
                                                                                     aGATGCaagatttcatcagcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctccccctcta       >  1:2881761‑M1/1‑6 (MQ=255)
                                                                                     aGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATaca       <  2:4056922/91‑1 (MQ=255)
                                                                                     aGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATaca       <  2:20228/91‑1 (MQ=255)
                                                                                      gATGCTGATGTAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac      <  2:4492552/91‑1 (MQ=255)
                                                                                      gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac      <  1:4889751/91‑1 (MQ=255)
                                                                                      gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac      >  2:1715099/1‑91 (MQ=255)
                                                                                      gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac      <  2:2532071/91‑1 (MQ=255)
                                                                                      gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac      <  2:2928407/91‑1 (MQ=255)
                                                                                       aTGCaagatttcatcagcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctccccctctata     >  2:900162‑M1/1‑4 (MQ=255)
                                                                                        tGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACaa    <  1:2023049/91‑1 (MQ=255)
                                                                                         gCaagatttcatcagcatctttagtcaattgtttcaaagctgcatttttcatagttgcttgtttcgccatgacacgctccccctctatata   <  1:5424422‑M1/91‑90 (MQ=255)
                                                                                         gCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTACCATTACCTTCATGCCCATTATATGAAGAACTACTAGATACACaaa   >  2:5536811/1‑91 (MQ=255)
                                                                                         gCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACaaa   <  2:4660784/91‑1 (MQ=255)
                                                                                         gCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACaaa   >  2:2654040/1‑91 (MQ=255)
                                                                                          cTGATGAAATCTTgcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctccccctctatataa  <  1:5223435‑M2/91‑79 (MQ=255)
                                                                                          cTGATGAAATCTTgcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctccccctctatataa  <  2:157419‑M2/91‑79 (MQ=255)
                                                                                          |                                                                                          
AAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAAT  >  USA300TCH1516_ALE/1120478‑1120658

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.