New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1181842 =245 (0.850)13 (0.050) 8/144 NT 6.1% intergenic (+409/+65) USA300HOU_RS05885/USA300TCH1516_01103 hypothetical protein/tRNA‑Arg
?USA300TCH1516_ALE 1181881 = 178 (0.690)intergenic (+448/+26) USA300HOU_RS05885/USA300TCH1516_01103 hypothetical protein/tRNA‑Arg

Only 100 of 314 total aligned reads displayed.

CGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCC  >  USA300TCH1516_ALE/1181752‑1181932
                                                                                          |                                                                                          
tcagctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattacca                                                                                            <  1:1938178‑M1/1‑1 (MQ=255)
cGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaa                                                                                            <  1:4619414/91‑1 (MQ=255)
  aaTAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaa                                                                                          >  1:89251/1‑91 (MQ=255)
   gctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaac                                                                                         <  1:4534367‑M1/4‑1 (MQ=255)
    tAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaaca                                                                                        <  1:1541189/91‑1 (MQ=255)
    tAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaaca                                                                                        >  1:1019108/1‑91 (MQ=255)
    tAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaaca                                                                                        <  2:2802160/91‑1 (MQ=255)
     aaGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaa                                                                                       <  2:3451782/91‑1 (MQ=255)
      ggatagagcaatggccttctgagccatcggtcgggggttcgaatccctcccaggacgcttataggtatttttatacgcatcaccaaacaaa                                                                                      <  1:5157984‑M1/7‑1 (MQ=255)
      aGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTaaaaacaaa                                                                                      <  2:3543181/91‑1 (MQ=255)
      aGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTAGTGACGCATCATACTATATTACTGAAATTcgaaacaaa                                                                                      <  1:5420344/91‑1 (MQ=255)
       gCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaaaa                                                                                     <  1:4461663/91‑1 (MQ=255)
       gCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaaaa                                                                                     >  1:2838348/1‑91 (MQ=255)
       gCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaaaa                                                                                     <  1:3785390/91‑1 (MQ=255)
       gCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaaaa                                                                                     >  2:731826/1‑91 (MQ=255)
       gCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGAGGGACGTTTTGGTGACGCATCATCCTATATTACTGAAATTcaaaacaaaa                                                                                     >  2:4688217/1‑91 (MQ=255)
            cTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGc                                                                                <  1:3510531/91‑1 (MQ=255)
             ttGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGcc                                                                               <  2:2462506/91‑1 (MQ=255)
              tGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGccc                                                                              <  2:4232473/91‑1 (MQ=255)
                 tttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGt                                                                           >  2:1186064/1‑91 (MQ=255)
                  ttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTa                                                                          <  2:2690973/91‑1 (MQ=255)
                  ttAATTACCGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTa                                                                          <  2:2926781/91‑1 (MQ=255)
                    aaTTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAAt                                                                        >  2:3462577/1‑91 (MQ=255)
                     aTTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATc                                                                       >  1:3112482/1‑91 (MQ=255)
                       tACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCAc                                                                     >  2:1752916/1‑91 (MQ=255)
                        ctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAGAGCCCCGTAATCACgg                                                                   >  1:2598343‑M1/67‑91 (MQ=255)
                        aCTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACg                                                                    <  1:2057345/91‑1 (MQ=255)
                         cTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACgg                                                                   <  1:1051880/91‑1 (MQ=255)
                         cTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACgg                                                                   <  2:1019325/91‑1 (MQ=255)
                         cTGTATTTTCGGGGCTTATGCGGGGGACGTATTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACgg                                                                   <  2:339094/91‑1 (MQ=255)
                           gTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGaa                                                                 >  1:2230417/1‑91 (MQ=255)
                           gTATTATCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGaa                                                                 >  2:5530605/1‑91 (MQ=255)
                            tATTTTCGGGGCGTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                <  1:5364364/91‑1 (MQ=255)
                             aTTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAAct                                                               <  1:942998/91‑1 (MQ=255)
                             aTTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGACCCCCGTAATCACGGAAct                                                               >  1:5540950/1‑91 (MQ=255)
                             aTTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCAGCATACTATATTACTGAAATTCAAAACAAAAAGAGTTCCGTGATTACggggct                                                               <  1:674200/91‑5 (MQ=37)
                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              <  1:1976815/91‑1 (MQ=255)
                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  1:3069888/1‑91 (MQ=255)
                               tttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             <  1:2682880/91‑1 (MQ=255)
                                ttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            <  1:1824672/91‑1 (MQ=255)
                                 cggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAGAGCCCCGTAATCACGGAACTCtttt                                                          >  1:5480047‑M1/58‑91 (MQ=255)
                                  cGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtttt                                                          >  1:4919980/1‑91 (MQ=255)
                                  cGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtttt                                                          <  1:5215868/91‑1 (MQ=255)
                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       >  2:402283/1‑91 (MQ=255)
                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       >  2:3124247/1‑91 (MQ=255)
                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       <  1:1714933/91‑1 (MQ=255)
                                       cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                     <  2:5199105/91‑1 (MQ=255)
                                        ttATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                    >  1:2966063/1‑91 (MQ=255)
                                         tATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGt                                                   >  2:3766432/1‑91 (MQ=255)
                                         tATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGt                                                   >  1:1889597/1‑91 (MQ=255)
                                           tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                 <  1:1171165/91‑1 (MQ=255)
                                            gCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAAt                                                <  2:3855600/91‑1 (MQ=255)
                                             cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                               <  1:1224079/91‑1 (MQ=255)
                                               ggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCg                                             <  2:3710460/91‑1 (MQ=255)
                                                 ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           <  2:1647149/91‑1 (MQ=255)
                                                 ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           <  1:1279264/91‑1 (MQ=255)
                                                 ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           >  1:2478584/1‑91 (MQ=255)
                                                 ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           <  2:666577/91‑1 (MQ=255)
                                                 ggACATTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           <  2:2507603/91‑1 (MQ=255)
                                                  gACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGtat                                          >  2:5057786/1‑91 (MQ=255)
                                                   gcGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGtata                                         <  1:5116896/90‑1 (MQ=255)
                                                    cGTTTTGGTGACGCATCATACTATGTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaa                                        >  1:5464311/1‑91 (MQ=255)
                                                      ttttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaaa                                      >  1:790189/1‑91 (MQ=255)
                                                       tttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaaaa                                     >  2:4881645/1‑91 (MQ=255)
                                                        ttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAAt                                    <  1:3318046/91‑1 (MQ=255)
                                                          ggTGACGCATCATACTATATTACTGAAATTTAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATAc                                  <  1:4352023/91‑1 (MQ=255)
                                                              aCGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCtat                              <  1:2150090/91‑1 (MQ=255)
                                                                gCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                            >  1:3385496/1‑91 (MQ=255)
                                                                gCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                            <  1:4766275/91‑1 (MQ=255)
                                                                gCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                            <  2:5484262/91‑1 (MQ=255)
                                                                   tcatATGATATTACTGAAATTAAAAACAAAAAGAACCCAGTAATCACGGAACTTTTTTGTTTGGTAATGCGTATAAAAATTCATATaaaag                         <  2:4160869/91‑3 (MQ=255)
                                                                   tcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACg                         >  2:2767745/1‑91 (MQ=255)
                                                                   tcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACg                         <  1:2735536/91‑1 (MQ=255)
                                                                    catACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGt                        <  2:1390385/91‑1 (MQ=255)
                                                                    catACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGt                        >  2:3801605/1‑91 (MQ=255)
                                                                    catACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGt                        <  1:3930379/91‑1 (MQ=255)
                                                                      tACTATATTACTGATATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTcc                      >  2:3637018/1‑91 (MQ=255)
                                                                       aCTATATTACTGAAATTCAAAGCAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCt                     <  2:3828258/91‑1 (MQ=255)
                                                                       aCTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCt                     >  1:4152462/1‑91 (MQ=255)
                                                                       aCTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCt                     >  2:2582848/1‑91 (MQ=255)
                                                                        cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                    <  2:460890/91‑1 (MQ=255)
                                                                         tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   <  1:2555625/91‑1 (MQ=255)
                                                                            atTACTGAAATTCAAAACAACAAGAGCCCCGTAAATACGGAACTCTTTTGTTTGGTCATGCGTATCAAAATACCTATAAACGTCCTgggtg                <  2:4726642/91‑3 (MQ=255)
                                                                             ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg               <  2:4959127/91‑1 (MQ=255)
                                                                             ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg               <  2:5156853/91‑1 (MQ=255)
                                                                                  gAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTc          >  2:1896802/1‑91 (MQ=255)
                                                                                     aTTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGaa       >  1:3819566/1‑91 (MQ=255)
                                                                                      ttCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAc      >  2:599755/1‑91 (MQ=255)
                                                                                       tCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcc     <  1:2918002/91‑1 (MQ=255)
                                                                                        caaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  1:1087825/91‑1 (MQ=255)
                                                                                        caaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  1:3859148/91‑1 (MQ=255)
                                                                                        caaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  1:125737/91‑1 (MQ=255)
                                                                                        caaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  2:1087335/91‑1 (MQ=255)
                                                                                        caaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTGGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  2:866770/91‑1 (MQ=255)
                                                                                        aaaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCATATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  2:3283875/90‑1 (MQ=255)
                                                                                         aaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcccc   <  2:1269906/91‑1 (MQ=255)
                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  <  1:365760‑M1/91‑1 (MQ=255)
                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  >  2:2163426‑M1/1‑91 (MQ=255)
                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  <  1:1414154‑M1/91‑1 (MQ=255)
                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  <  1:1358798‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
CGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCC  >  USA300TCH1516_ALE/1181752‑1181932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.