BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2031786	266 (0.930)	12 (0.060) +GCCGGCAAGGTTGACTAGAATT	6/116	NT	5.8%	intergenic (+252/+238)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2866873	272 (0.950)	12 (0.060) +GCCGGCAAGGTTGACTAGAATT	6/116	NT	5.8%	intergenic (‑272/+181)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein

Only 100 of 297 total aligned reads displayed.

TGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATA  >  USA300TCH1516_ALE/2031697‑2031864

tGGGAATCCAAATTCTCTTTGTTGGGGCCCACACCCCAACTTGAATTGTCTGTATTACTTGCGCATCCCCGTTCTCTTTCTTGGGGCCCCt                                                                               >  2:5617105/1‑91 (MQ=14)

 gggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTg                                                                              >  1:2296309/1‑91 (MQ=255)

  ggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGa                                                                             >  1:3864156/1‑91 (MQ=255)

  ggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGa                                                                             >  1:2433740/1‑91 (MQ=255)

    taTCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACt                                                                           <  2:5304387/90‑1 (MQ=255)

     aTCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTa                                                                          >  1:4686/1‑91 (MQ=255)

        cAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGaa                                                                       <  1:2723498/91‑1 (MQ=255)

         aaTTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAAt                                                                      <  1:4927027/91‑1 (MQ=255)

          aTTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAAtt                                                                     <  2:53590/91‑1 (MQ=255)

           tttCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTg                                                                    >  2:85146/1‑91 (MQ=255)

           tttCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTg                                                                    <  2:3904023/91‑1 (MQ=255)

            ttCTCTTAGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGa                                                                   <  1:4823673/91‑1 (MQ=255)

              ctctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaa                                                                 >  2:3299872/1‑91 (MQ=255)

               tctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                >  1:1038317/1‑91 (MQ=255)

               tctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                <  1:4966290/91‑1 (MQ=255)

               tctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                <  2:1781718/91‑1 (MQ=255)

                ctgtgttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAAAAAAGaaaaa                                                               <  2:3647259/88‑1 (MQ=11)

                ctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaaa                                                               <  2:3119665/91‑1 (MQ=255)

                ctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaaa                                                               >  1:4114507/1‑91 (MQ=255)

                ctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaaa                                                               >  2:1860320/1‑91 (MQ=255)

                ctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaaa                                                               <  1:5199379/91‑1 (MQ=255)

                 tttGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGAATAAAATTGaaaaaa                                                              <  2:1055306/91‑1 (MQ=255)

                  ttgttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAg                                                             >  1:3016705/1‑91 (MQ=255)

                  ttgttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAg                                                             >  1:174695/1‑91 (MQ=255)

                   tgttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGc                                                            <  2:3082704/91‑1 (MQ=255)

                   tgttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGc                                                            <  1:514758/91‑1 (MQ=255)

                    gttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCt                                                           >  1:2196168/1‑91 (MQ=255)

                       ggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGt                                                        >  1:3271841/1‑91 (MQ=255)

                       ggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGt                                                        <  1:1394017/91‑1 (MQ=255)

                         ggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTa                                                      >  2:2126699/1‑91 (MQ=255)

                         ggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTa                                                      >  2:1508348/1‑91 (MQ=255)

                          gCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTAc                                                     >  2:413847/1‑91 (MQ=255)

                          gCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTAc                                                     <  2:5152884/91‑1 (MQ=255)

                           gtcacaccCCAACTTGCAGTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCgccggcaaggttgacaagaataaaaaaa                                                    <  2:4862917‑M1/89‑29 (MQ=255)

                           cccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACa                                                    >  1:2032958/1‑91 (MQ=255)

                           cccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACa                                                    >  1:426344/1‑91 (MQ=255)

                           cccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACa                                                    >  1:4437564/1‑91 (MQ=255)

                            ccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCt                                                           >  1:533708/1‑83 (MQ=255)

                            ccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCt                                                           <  2:533708/83‑1 (MQ=255)

                            ccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACaa                                                   >  2:1177787/1‑91 (MQ=255)

                            ccACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACaa                                                   <  1:1213065/91‑1 (MQ=255)

                             cacaCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAg                                                  <  1:3688941/91‑1 (MQ=255)

                              acacCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACACgc                                                 >  2:2796898/1‑91 (MQ=255)

                              acacCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgc                                                 >  1:2659056/1‑91 (MQ=255)

                                acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                               <  2:1542049/91‑1 (MQ=255)

                                acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                               >  2:5559174/1‑91 (MQ=255)

                                acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                               >  1:1075724/1‑91 (MQ=255)

                                acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                               >  1:3785570/1‑91 (MQ=255)

                                acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                               <  1:3514962/91‑1 (MQ=255)

                                acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTATTACAAgcgc                                               <  1:1811168/91‑1 (MQ=255)

                                acCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTCCTCTTTGTTGGTGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                               >  1:4709074/1‑91 (MQ=255)

                                 ccccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCa                                              >  2:1532386/1‑91 (MQ=255)

                                  cccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt                                             <  2:2860209/91‑1 (MQ=255)

                                   ccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                            >  1:1972976/1‑91 (MQ=255)

                                   ccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                            <  1:417151/91‑1 (MQ=255)

                                    cgaCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCGCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttt                                           <  2:3959656/89‑1 (MQ=255)

                                       cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                        <  2:4541631/91‑1 (MQ=255)

                                       cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                        >  1:2855/1‑91 (MQ=255)

                                       cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                        >  1:2491268/1‑91 (MQ=255)

                                       cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                        <  1:568011/91‑1 (MQ=255)

                                       cTTGCATTGTCTGTAGAAATTGGCGTTCCAATTTCTCTTTGTTGGGGCCCCgccggcaaggttgactagaattgaaaatgcgcttgtaaca                                        <  1:1604298‑M1/91‑41 (MQ=255)

                                        ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                       <  2:1443971/91‑1 (MQ=255)

                                        ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                       <  1:4642674/91‑1 (MQ=255)

                                           cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCa                                    >  1:3382087/1‑91 (MQ=255)

                                            aTTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTATAATTGAAAAAAGCTTGTTACAAGCGCATTTGCGTTCAg                                   <  1:5431735/91‑1 (MQ=255)

                                             ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCgccggcaaggttgactagaattgaaaatgcgcttgtaacaagcttt                                  <  1:1947972‑M1/91‑47 (MQ=255)

                                             ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGt                                  <  2:4702260/91‑1 (MQ=255)

                                             ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGt                                  >  2:4626220/1‑91 (MQ=255)

                                              tGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                 <  1:399093/91‑1 (MQ=255)

                                                tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCaa                               <  2:340564/91‑1 (MQ=255)

                                                  tggagaaATGGGGAATCCAATTGCTCTTTGTTGGGGGCCCgccggcaaggttgactagaattgaaaatgcgcttgtaacaagcttttttca                             <  2:747748‑M1/88‑52 (MQ=255)

                                                  tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact                             <  2:5512479/91‑1 (MQ=255)

                                                  tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact                             <  1:2973099/91‑1 (MQ=255)

                                                   gTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCgccggcaaggttgactgaacgaaaatgcgcttgtaacaagcttttttcaatt                            <  2:5007826‑M1/91‑53 (MQ=255)

                                                   gTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta                            >  2:1603013/1‑91 (MQ=255)

                                                      gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCgccggcaaggttgactgaacgaaaattcgcttgtaacaagcttttttcaattcta                         <  1:2803372‑M1/91‑56 (MQ=255)

                                                      gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                         >  2:2620346/1‑91 (MQ=255)

                                                      gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                         <  1:773306/91‑1 (MQ=255)

                                                          ttGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                     <  2:2290044/91‑1 (MQ=255)

                                                          ttGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                     <  2:4394586/91‑1 (MQ=255)

                                                          ttGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                     <  2:1942786/91‑1 (MQ=255)

                                                            gggAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAata                   >  1:4367737/1‑91 (MQ=255)

                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  <  2:51789/91‑1 (MQ=255)

                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  <  1:1500006/91‑1 (MQ=255)

                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  >  1:3340911/1‑91 (MQ=255)

                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  >  2:2726329/1‑91 (MQ=255)

                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  <  2:2465788/91‑1 (MQ=255)

                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  <  1:3891213/91‑1 (MQ=255)

                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  <  1:5573579/91‑1 (MQ=255)

                                                              gAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAtata                 >  1:650623/1‑91 (MQ=255)

                                                               aaTCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATaa                <  2:3535405/91‑1 (MQ=255)

                                                                aTCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc               >  1:88284/1‑91 (MQ=255)

                                                                  ccAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt             >  2:1711121/1‑91 (MQ=40)

                                                                  ccAATTTCTCTTTGTTGGGGCACCTGACTAAAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt             <  2:2493037/91‑1 (MQ=255)

                                                                    aaTTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTTGTTCAGTCAACTACTGCCAATATAACTTCg           <  2:2115380/91‑1 (MQ=255)

                                                                       ttCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTag        <  2:3856226/91‑1 (MQ=34)

                                                                        tctcTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTaga       >  1:2592133/1‑91 (MQ=34)

                                                                           ctTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa    <  1:3114878/91‑1 (MQ=33)

                                                                           ctTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa    >  1:2152663/1‑91 (MQ=33)

                                                                             ttgttgGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa  >  2:232725/1‑91 (MQ=31)

TGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATA  >  USA300TCH1516_ALE/2031697‑2031864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.