BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2102579	220 (0.770)	14 (0.050)	9/146	NT	6.2%	intergenic (‑39/+277)	USA300HOU_RS10625/USA300HOU_RS10630	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2102583	220 (0.840)	14 (0.050)	9/146	NT	6.2%	intergenic (‑43/+273)	USA300HOU_RS10625/USA300HOU_RS10630	hypothetical protein/hypothetical protein

Only 100 of 322 total aligned reads displayed.

TTGCTTTTGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCG  >  USA300TCH1516_ALE/2102489‑2102669

  gCTTTTGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGac                                                                                          <  1:1258138‑M1/91‑3 (MQ=255)

   cTTTTGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTg                                                                                         >  1:27837/1‑91 (MQ=255)

   cTTTTGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTg                                                                                         >  1:220497/1‑91 (MQ=255)

   cTTTTGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGACATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTg                                                                                         <  2:4042849/91‑1 (MQ=255)

    ttttGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGt                                                                                        >  2:3123896/1‑91 (MQ=255)

    ttttGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTCGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGt                                                                                        <  1:5497223/91‑1 (MQ=255)

      ttGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcc                                                                                      <  1:2487700‑M2/91‑3 (MQ=255)

        ggATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccc                                                                                    <  2:1696577‑M2/91‑5 (MQ=255)

        ggATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccc                                                                                    <  1:3383972‑M2/91‑5 (MQ=255)

        ggATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccc                                                                                    <  2:4506268‑M2/91‑5 (MQ=255)

         gATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccct                                                                                   >  2:3587581‑M2/1‑86 (MQ=255)

          aTCTTCTACTAATTTAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGATTGGacaatccctc                                                                                  <  2:3484853‑M1/91‑11 (MQ=255)

           tcttctAGTGATTGAATACTGTTACGGTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGacaacccctct                                                                                 <  2:4517936‑M1/91‑12 (MQ=255)

           tcttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGacaacccctct                                                                                 <  1:5174771‑M1/91‑12 (MQ=255)

           tcttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccctct                                                                                 >  1:3413669‑M2/1‑84 (MQ=255)

             ttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGacaacccctctat                                                                               <  2:4598904‑M1/91‑14 (MQ=255)

             ttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTa                                                                               <  2:4147955/91‑1 (MQ=255)

             ttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTa                                                                               >  2:67406/1‑91 (MQ=255)

              tctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTAt                                                                              <  2:18716/91‑1 (MQ=255)

              tctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTAt                                                                              <  2:4843017/91‑1 (MQ=255)

               ctactaATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAGAATAGAGGGGTTGTCCCCTCTTATg                                                                             <  1:4857190/91‑1 (MQ=255)

               ctactaATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATg                                                                             <  2:2992599/91‑1 (MQ=255)

                 actaATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCt                                                                           >  1:805103/1‑91 (MQ=255)

                 actaATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCt                                                                           >  2:3496505/1‑91 (MQ=255)

                    aaTTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCt                                                                        <  2:2441086/91‑1 (MQ=255)

                     aTTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTa                                                                       >  2:617748/1‑91 (MQ=255)

                      ttGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTAc                                                                      <  2:2377144/91‑1 (MQ=255)

                       tGAATAATGTTACGTTTTAATATTGTCATTGTGTAATACTCGCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACa                                                                     <  2:5239203/91‑1 (MQ=255)

                          ataatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACAttt                                                                  <  2:961106/91‑1 (MQ=255)

                          ataatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAAGAAAATAGAGGGGTTGTCCCCTCTTATGCTTGTACAttt                                                                  <  1:5427454/91‑1 (MQ=255)

                           taatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTa                                                                 >  2:1442517/1‑91 (MQ=255)

                           taatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTa                                                                 >  1:1010609/1‑91 (MQ=255)

                           taatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTa                                                                 >  1:4550719/1‑91 (MQ=255)

                            aatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTAt                                                                <  2:1086670/91‑1 (MQ=255)

                            aatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCATTATTTTCAAATAAAATATAGGGGTTGTCCCCTCTTATGCTTCTACATTTAt                                                                >  2:501225/1‑91 (MQ=255)

                             atGTTAAGTTTTAGTTTTGCCCTTTTATAATACTCTCCTTATTTTCAAATAAAATATACAGGTTGTCCCCTCTTTTGCTTTCACATTAAtt                                                               >  2:2821569/1‑91 (MQ=255)

                              tGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTg                                                              <  1:3138745/91‑1 (MQ=255)

                               gTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGt                                                             >  1:1449942/1‑91 (MQ=255)

                               gTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGt                                                             <  1:881100/91‑1 (MQ=255)

                               gTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGt                                                             >  1:3261366/1‑91 (MQ=255)

                                ttACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGtt                                                            <  2:266762/91‑1 (MQ=255)

                                ttACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGCGTTGTCCCCTCTTATGCTTCTACATTTATTGtt                                                            <  1:5607349/91‑1 (MQ=255)

                                 tACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTta                                                           >  1:1659621/1‑91 (MQ=255)

                                    gTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAg                                                        <  2:4446034/91‑1 (MQ=255)

                                     ttttAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAgt                                                       <  1:4147105/91‑1 (MQ=255)

                                     ttttAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAgt                                                       <  1:4262790/91‑1 (MQ=255)

                                       ttAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAgtgt                                                     <  1:4813311/91‑1 (MQ=255)

                                         aaTTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCa                                                   >  1:3786830/1‑91 (MQ=255)

                                         aaTTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCa                                                   >  2:1025943/1‑91 (MQ=255)

                                         aaTTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCa                                                   <  2:2035768/91‑1 (MQ=255)

                                           ttttGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACt                                                 <  2:3897625/91‑1 (MQ=255)

                                            tttGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTc                                                >  1:580100/1‑91 (MQ=255)

                                             ttGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCa                                               <  2:5570990/91‑1 (MQ=255)

                                             ttGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCa                                               <  1:103259/91‑1 (MQ=255)

                                              tGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCat                                              <  1:174540/91‑1 (MQ=255)

                                              tGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCat                                              <  1:1968785/91‑1 (MQ=255)

                                              tGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCat                                              <  1:3301034/91‑1 (MQ=255)

                                               gCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCata                                             <  1:1161980/91‑1 (MQ=255)

                                                ccATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCatat                                            >  1:5639638/1‑91 (MQ=255)

                                                 cATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATAtt                                           >  1:4330704/1‑91 (MQ=255)

                                                  aTTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTa                                          <  2:4284672/91‑1 (MQ=255)

                                                    tttATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTAcc                                        <  1:3555969/91‑1 (MQ=255)

                                                    tttATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTAcc                                        >  2:3228768/1‑91 (MQ=255)

                                                      tataATACTCTCCTTATTTTCAAATAAAATAGCGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATACTACCaa                                      >  2:5151512/1‑91 (MQ=255)

                                                      tataATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCaa                                      <  2:5138294/91‑1 (MQ=255)

                                                         aataCTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACat                                   <  2:3988626/91‑1 (MQ=255)

                                                          ataCTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTGACTCATATTACTAACata                                  >  1:4734440/1‑91 (MQ=255)

                                                          ataCTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACata                                  >  1:768498/1‑91 (MQ=255)

                                                              tctcCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCt                              <  2:438969/91‑1 (MQ=255)

                                                              tctcCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCt                              <  2:2250577/91‑1 (MQ=255)

                                                              tctcCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCt                              <  2:1934809/91‑1 (MQ=255)

                                                                     aTTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCg                       <  1:2395983/91‑1 (MQ=255)

                                                                        ttCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTgg                    <  2:2599478/91‑1 (MQ=255)

                                                                         tCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGc                   >  2:1635127/1‑91 (MQ=255)

                                                                          cAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCa                  <  1:5078872/91‑1 (MQ=255)

                                                                          cAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCa                  <  1:2702238/91‑1 (MQ=255)

                                                                          cAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCa                  <  2:3427828/91‑1 (MQ=255)

                                                                           aaataaaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCaa                 >  2:1501334/1‑91 (MQ=255)

                                                                           aaataaaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCaa                 <  2:3793769/91‑1 (MQ=255)

                                                                            aataaaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAAt                >  1:4961182/1‑91 (MQ=255)

                                                                            aataaaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAAt                >  2:1227811/1‑91 (MQ=255)

                                                                              taaaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATAc              >  1:2880188/1‑91 (MQ=255)

                                                                                  ataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTtg          <  1:3580480/91‑1 (MQ=255)

                                                                                  ataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTtg          <  1:1698418/91‑1 (MQ=255)

                                                                                  ataGAGGGGTTGTCCCCTCTGATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAATATATGCTTTACCCGTGGCAATACCTtg          <  2:5380790/91‑1 (MQ=255)

                                                                                    agagGGGacaacccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaaga        <  1:1680099‑M1/91‑85 (MQ=255)

                                                                                    agagGGGTTGTcccctctattttatttgaaaataaggagagtattataaaattgcaaaattaaaacgtaacattattcaattattagaaga        <  2:4635934‑M2/91‑81 (MQ=255)

                                                                                     gagGGGacaacccctctattttattggaaaataaggagattattataaaatggcaaaattaaaacgtaacgttattcaattagtagaagat       <  2:3033163‑M1/91‑86 (MQ=255)

                                                                                     gagGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGc       >  1:2065816/1‑91 (MQ=255)

                                                                                     gagGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGc       >  2:2174002/1‑91 (MQ=255)

                                                                                     gagGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGc       <  1:1776024/91‑1 (MQ=255)

                                                                                      agGGGacaacccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatc      >  1:944064‑M1/1‑5 (MQ=255)

                                                                                      agGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCt      <  1:2319051/91‑1 (MQ=255)

                                                                                        gggacaacccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatcca    >  2:1804582‑M1/1‑3 (MQ=255)

                                                                                        gggTTGTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatcca    <  2:2296927‑M2/91‑85 (MQ=255)

                                                                                        gggTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTc    <  1:4376252/91‑1 (MQ=255)

                                                                                          gTTGTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatccaaa  <  2:2499534‑M2/91‑87 (MQ=255)

                                                                                          gTTGTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatccaaa  <  2:1742418‑M2/91‑87 (MQ=255)

                                                                                          gTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCg  >  2:1334542/1‑91 (MQ=255)

                                                                                          gTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCg  <  1:3745020/91‑1 (MQ=255)

TTGCTTTTGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCG  >  USA300TCH1516_ALE/2102489‑2102669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.