New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2442821232 (0.810)10 (0.040) 8/128 NT 5.1% intergenic (+18/+40) glvR/USA300HOU_RS12585 HTH‑type transcriptional regulator GlvR/hypothetical protein
?USA300TCH1516_ALE = 2442838 191 (0.830)intergenic (+35/+23) glvR/USA300HOU_RS12585 HTH‑type transcriptional regulator GlvR/hypothetical protein

Only 100 of 490 total aligned reads displayed.

TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA  >  USA300TCH1516_ALE/2442731‑2442911
                                                                                          |                                                                                          
atggtgcatggtttcgaattgatgtttgataagatgtaccacgttatcgaaacatcaacacaacaataaaatgatAAAAGGAAGTTATGAt                                                                                            >  2:1206602‑M1/76‑91 (MQ=255)
  aTCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAttt                                                                                          <  1:3560685/91‑1 (MQ=255)
    cATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTaa                                                                                        >  1:3390391/1‑91 (MQ=255)
     atatatTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAAt                                                                                       <  2:2648991/91‑1 (MQ=255)
      tatatTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATg                                                                                      <  2:305153/91‑1 (MQ=255)
         atTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGcc                                                                                   >  1:301734/1‑91 (MQ=255)
             tttGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGa                                                                               <  1:5651550/91‑1 (MQ=255)
             tcgaattgatgtgtgataagatgtaccacgttatcgaaacatcaacacaacaataaaatgatAAAAGGAAGTTATGATTTAATGGCCTTGa                                                                               >  2:3593976‑M1/63‑91 (MQ=255)
               tGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGc                                                                             <  1:1598185/91‑1 (MQ=255)
               tGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGc                                                                             <  1:128148/91‑1 (MQ=255)
                gAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGcc                                                                            <  1:4818195/91‑1 (MQ=255)
                gAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGcc                                                                            >  2:5116885/1‑91 (MQ=255)
                  aaCACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTa                                                                          <  1:5273436‑M2/91‑2 (MQ=255)
                   acacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTat                                                                         <  1:3091400‑M2/91‑3 (MQ=255)
                    cacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatc                                                                        >  1:3719896‑M2/1‑88 (MQ=255)
                    cacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatc                                                                        <  2:1407582‑M2/91‑4 (MQ=255)
                      cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                      <  1:4037694‑M2/91‑6 (MQ=255)
                      cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                      >  1:5269864‑M2/1‑86 (MQ=255)
                      cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                      <  1:1955700‑M2/91‑6 (MQ=255)
                      cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                      >  2:854034‑M2/1‑86 (MQ=255)
                      cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATATAAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                      >  2:4523256‑M2/1‑86 (MQ=255)
                           aaGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataactt                                                                 <  2:3124371‑M2/91‑11 (MQ=255)
                           aaGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataactt                                                                 >  2:2479923‑M2/1‑81 (MQ=255)
                            aGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttc                                                                >  2:5041969‑M2/1‑80 (MQ=255)
                            aGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttc                                                                <  1:623284‑M2/91‑12 (MQ=255)
                              aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcct                                                              <  2:4704320‑M2/91‑14 (MQ=255)
                               aaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctt                                                             >  1:2322070‑M2/1‑77 (MQ=255)
                                 atatAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctttt                                                           >  2:5267535‑M2/1‑75 (MQ=255)
                                   ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATGACTTCCTTTTAt                                                         <  2:2360249/91‑1 (MQ=255)
                                   ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                         >  1:3237768/1‑91 (MQ=255)
                                   ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                         <  2:1804490/91‑1 (MQ=255)
                                     aaTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCa                                                       >  2:3773965/1‑91 (MQ=255)
                                      aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                      <  2:1827088/91‑1 (MQ=255)
                                      aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                      <  1:4003001/91‑1 (MQ=255)
                                      aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                      >  2:3863766/1‑91 (MQ=255)
                                      aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                      <  1:2497345/91‑1 (MQ=255)
                                      aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                      >  2:5310047/1‑91 (MQ=255)
                                      aTGAGTATTTACTACATAATGATACTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                      <  1:3864460/91‑1 (MQ=255)
                                         aGTATTTACTACATAATGATAAATAAAAATAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt                                                   <  2:1021221/91‑1 (MQ=255)
                                          gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTACTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                  >  1:4663983/1‑91 (MQ=255)
                                          gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                  >  1:4937652/1‑91 (MQ=255)
                                          gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                  <  1:1879534/91‑1 (MQ=255)
                                           tATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAt                                                 <  2:1646204/91‑1 (MQ=255)
                                              ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaa                                              <  1:138433‑M2/91‑30 (MQ=255)
                                              ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                              <  1:2891587/91‑1 (MQ=255)
                                              ttACTACATAATGATATTAAAAAATAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                              <  2:2554454/91‑1 (MQ=255)
                                                  tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtg                                          <  1:429015/91‑1 (MQ=255)
                                                   acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                         <  1:3805936/91‑1 (MQ=255)
                                                   acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                         <  1:2665906/91‑1 (MQ=255)
                                                   acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                         <  2:3675968/91‑1 (MQ=255)
                                                   acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                         >  2:288448/1‑91 (MQ=255)
                                                          gATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtt                                  >  2:419163/1‑91 (MQ=255)
                                                          gATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtt                                  <  2:647881/91‑1 (MQ=255)
                                                           atatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGttt                                 <  1:1192127/91‑1 (MQ=255)
                                                           atatTTAAAATTAAAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGttt                                 <  2:1941897/91‑1 (MQ=255)
                                                            tatTTCAAATTAGAAAAAGGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtttt                                >  2:1988461/1‑90 (MQ=255)
                                                             atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                               <  1:5559046/91‑1 (MQ=255)
                                                             atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                               >  2:4000732/1‑91 (MQ=255)
                                                             atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                               >  2:4857047/1‑91 (MQ=255)
                                                              tttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                              <  1:2246798/91‑1 (MQ=255)
                                                               ttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGAt                             <  2:2031592/91‑1 (MQ=255)
                                                               ttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGAt                             <  2:757942/91‑1 (MQ=255)
                                                                 cAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGTTGTTTCGATaa                           >  2:5647440/1‑91 (MQ=255)
                                                                  aaaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAc                          >  2:947165/1‑91 (MQ=255)
                                                                  aaaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAc                          <  2:3397271/91‑1 (MQ=255)
                                                                   aaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACg                         >  2:227976/1‑91 (MQ=255)
                                                                      tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                      <  2:412152/91‑1 (MQ=255)
                                                                       aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                     >  2:4672949/1‑91 (MQ=255)
                                                                       aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                     <  1:4546855/91‑1 (MQ=255)
                                                                       aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                     <  1:4768004/91‑1 (MQ=255)
                                                                        gAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTa                    >  2:2173201/1‑91 (MQ=255)
                                                                        gAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGATTCGATAGCGTGGTa                    >  2:4356751/1‑91 (MQ=255)
                                                                         aaaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAc                   >  2:5514789/1‑91 (MQ=255)
                                                                         aaaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAc                   <  1:2539873/91‑1 (MQ=255)
                                                                          aaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACa                  >  1:2091287/1‑91 (MQ=255)
                                                                          aaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACa                  >  1:5411810/1‑91 (MQ=255)
                                                                           aaaaGGAAGTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatat                 <  1:3145272‑M1/91‑76 (MQ=255)
                                                                             aaGGAAGTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattt               >  1:1749622‑M1/1‑14 (MQ=255)
                                                                             AAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt               <  2:5428927‑M1/91‑1 (MQ=255)
                                                                             AAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt               <  1:4892248‑M1/91‑1 (MQ=255)
                                                                             AAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt               <  2:928648‑M1/91‑1 (MQ=255)
                                                                              aGGAAGTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatatttt              >  1:2712416‑M1/1‑13 (MQ=255)
                                                                              aGGAAGTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatatttt              <  2:1879534‑M1/91‑79 (MQ=255)
                                                                              aGGAAGTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatatttt              >  2:3005087‑M1/1‑13 (MQ=255)
                                                                               GGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTa             >  2:3149238‑M1/1‑91 (MQ=255)
                                                                                  AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa          <  1:2581605‑M1/91‑1 (MQ=255)
                                                                                  AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa          <  1:1101781‑M1/91‑1 (MQ=255)
                                                                                    TTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaaa        >  1:936202‑M1/1‑91 (MQ=255)
                                                                                    TTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaaa        <  1:1454455‑M1/91‑1 (MQ=255)
                                                                                      aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag      <  1:2397005‑M1/91‑87 (MQ=255)
                                                                                      aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag      <  1:959100‑M1/91‑87 (MQ=255)
                                                                                      aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag      <  2:115787‑M1/91‑87 (MQ=255)
                                                                                      aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag      >  2:2708773‑M1/1‑5 (MQ=255)
                                                                                      ATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACa      <  1:4153922‑M1/91‑1 (MQ=255)
                                                                                        gATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtg    <  1:747896‑M1/91‑89 (MQ=255)
                                                                                        GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc    >  2:3845273‑M1/1‑91 (MQ=255)
                                                                                        GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTACCAAACATc    >  2:4469768‑M1/1‑91 (MQ=255)
                                                                                         aTaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgt   <  1:5002719‑M1/91‑90 (MQ=255)
                                                                                         aTaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgt   <  1:1369703‑M1/91‑90 (MQ=255)
                                                                                          tttAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgtt  <  2:4269161‑M2/91‑74 (MQ=255)
                                                                                          |                                                                                          
TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA  >  USA300TCH1516_ALE/2442731‑2442911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.