| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2541819 | 263 (0.920) | 15 (0.060) | 10/136 | NT | 5.6% | intergenic (+78/‑422) | sbi/hlgA | Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A |
| ? | USA300TCH1516_ALE | = 2541837 | 280 (1.150) | intergenic (+96/‑404) | sbi/hlgA | Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A | |||||
Only 100 of 449 total aligned reads displayed.
ATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAAC > USA300TCH1516_ALE/2541729‑2541909 | aTTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGT > 2:4042703‑M1/1‑91 (MQ=255) ttCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGtt < 2:5363451/91‑1 (MQ=255) tCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTg > 1:2827873/1‑91 (MQ=255) tCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTg < 2:4131067/91‑1 (MQ=255) cTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGa < 2:453022/91‑1 (MQ=255) cTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGa < 1:2277734/91‑1 (MQ=255) gAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATtc > 2:3674055/1‑91 (MQ=255) aaaTAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATtct < 2:3564277/91‑1 (MQ=255) ataatCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCa < 1:2547967/91‑1 (MQ=255) taatCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCaa < 2:5648857/91‑1 (MQ=255) taatCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCaa > 1:5123879/1‑91 (MQ=255) aatcaatcAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAAt < 1:3231737/91‑1 (MQ=255) tcaatcaaAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTagattcgattgag < 1:2165017‑M1/91‑14 (MQ=255) tcaatcaaAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCg > 1:3745726/1‑91 (MQ=255) aatcaaAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGaa > 1:2291355/1‑91 (MQ=255) caaAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTagattcgattgagaatca < 2:3024703‑M1/91‑19 (MQ=255) aaaTATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacg > 1:403817‑M2/1‑88 (MQ=255) atatCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggt > 2:1320414‑M2/1‑86 (MQ=255) atCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttc > 2:1417730‑M2/1‑84 (MQ=255) atCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttc < 2:918891‑M2/91‑8 (MQ=255) tcttctCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttct < 1:2245055‑M2/91‑9 (MQ=255) tcttctCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttct < 1:4868444‑M2/91‑9 (MQ=255) tcttctCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttct > 2:3710446‑M2/1‑83 (MQ=255) cttctCTAGTTTTACGTCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctt > 2:4353906‑M2/1‑82 (MQ=255) ttctCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttcttt < 1:3303236‑M2/91‑11 (MQ=255) tctcTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctttt > 1:4974708‑M2/1‑80 (MQ=255) tctcTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctttt < 1:1066920‑M2/91‑12 (MQ=255) tctcTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctttt > 1:2935644‑M2/1‑80 (MQ=255) tctAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCtttttt < 1:1808202/91‑1 (MQ=255) aGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAt < 2:203136/91‑1 (MQ=255) ttttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAttt < 1:3657403/91‑1 (MQ=255) ttttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAttt < 1:4078207/91‑1 (MQ=255) tttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAtttt < 1:764941/91‑1 (MQ=255) tttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAtttt < 2:3984693/91‑1 (MQ=255) aCATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCa > 1:4192627/1‑91 (MQ=255) catcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCAt < 1:306046/91‑1 (MQ=255) aatcattTTTTAAATAATTTTCGTAACTAACCGTGAGTAAAAAGGTCCGTagattcgattgagaatcaacggttctttttaatcacggttt < 2:5632629‑M1/90‑42 (MQ=255) atcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATc < 1:4161185/91‑1 (MQ=255) tcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCa < 2:3531223/91‑1 (MQ=255) atTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAAt < 1:2686388/91‑1 (MQ=255) atTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAAt > 2:2412417/1‑91 (MQ=255) tttAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTaaa < 1:1272544/91‑1 (MQ=255) ttAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAAt < 1:4460889/91‑1 (MQ=255) ttAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAAt < 2:2109210/91‑1 (MQ=255) tAAATAATTTTCGTAACAATCCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATg < 2:1059265/91‑1 (MQ=255) aatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGcttct < 1:2479295/91‑1 (MQ=255) aatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGcttct < 1:8397/91‑1 (MQ=255) tttCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCg < 2:610304/91‑1 (MQ=255) ttCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGc < 1:1474182/91‑1 (MQ=255) tCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCt < 1:3457859/91‑1 (MQ=255) tCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCt < 1:470853/91‑1 (MQ=255) tCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCt > 2:833721/1‑91 (MQ=255) tCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCt < 1:1036781/91‑1 (MQ=255) tCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTGTCCATCAATTAAATGCTTCTTCGCt > 2:5234204/1‑91 (MQ=255) gTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAt > 1:1548156/1‑91 (MQ=255) gTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAt > 2:4784735/1‑91 (MQ=255) tAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAtt > 1:539764/1‑91 (MQ=255) aaCAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCGATTAAATGCTTCTTCGCTAttt < 2:4300950/91‑1 (MQ=255) aCAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTg > 1:1654619/1‑91 (MQ=255) cGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGcc < 2:176378/91‑1 (MQ=255) gTGATTTAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGccc < 2:5170147/91‑1 (MQ=255) gTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaa < 1:1391291‑M2/91‑56 (MQ=255) gTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctttttaatcaaggtttgttacgaaaattatttaaaaaatgatgtaaaa < 2:2333510‑M2/91‑56 (MQ=255) gTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGccc < 2:3264556/91‑1 (MQ=255) tGATTAAAAAGAACCGTTGATTCTCAATCGAATGTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa > 1:5606109/1‑91 (MQ=255) tGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa < 1:4820343/91‑1 (MQ=255) tGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa < 2:2816135/91‑1 (MQ=255) tGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa < 2:2941391/91‑1 (MQ=255) tGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa < 2:464320/91‑1 (MQ=255) tGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa < 2:1588939/91‑1 (MQ=255) aTTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACt < 2:1840164/91‑1 (MQ=255) aTTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACt > 1:4007986/1‑91 (MQ=255) aTTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACt > 1:1717932/1‑91 (MQ=255) aTTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATCAAATGCTTCTTCGCTATTTGTCAGCCCACt > 1:4346189/1‑91 (MQ=255) aaaaaGAACCGTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagag > 2:3451396‑M1/1‑12 (MQ=255) aaaaGAACCGTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaacctagaga > 2:4928366‑M1/1‑11 (MQ=255) aaaaGAACCGTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagaga > 2:3872960‑M1/1‑11 (MQ=255) aaaaGAACCGTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagaga < 1:5320339‑M1/91‑81 (MQ=255) aaaaGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttttt > 2:1225880/1‑91 (MQ=255) aaaGAACCGTTGATTCTCAATCGAATCTacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaa < 1:1175794‑M2/91‑64 (MQ=255) aaaGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACtttttt < 2:859216/91‑1 (MQ=255) aGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTAc > 1:2042073/1‑91 (MQ=255) gAACCGTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaagat > 2:5121277‑M1/1‑7 (MQ=255) gAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTAcc < 1:3860186/91‑1 (MQ=255) aaCCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCt > 2:3925112/1‑91 (MQ=255) aaCCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCt < 1:4582550/91‑1 (MQ=255) aaCCGCTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCACCCCACTTTTTTACCt > 2:5532312/1‑91 (MQ=255) aCCGTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaagatat < 1:2931576‑M1/91‑87 (MQ=255) aCCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTg < 2:3127864/91‑1 (MQ=255) aCCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTg < 1:651217/91‑1 (MQ=255) ccGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGc < 1:451847/91‑1 (MQ=255) cGTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaagatattt < 2:2627797‑M1/91‑89 (MQ=255) cGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCa < 1:2761763/91‑1 (MQ=255) cGTTGATTCTCAAACGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCa < 2:219334/91‑1 (MQ=255) gTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaagatatttt > 1:3489876‑M1/1‑2 (MQ=255) gTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaagatatttt > 1:5082945‑M1/1‑2 (MQ=255) gTagattcgattgagaatcaacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaagatatttt < 1:1750301‑M1/91‑90 (MQ=255) gTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCaa > 2:5003687/1‑91 (MQ=255) gTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCaa > 2:3336501/1‑91 (MQ=255) gTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCaa > 1:2438791/1‑91 (MQ=255) | ATTCTGGAAATAATCAATCAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAAC > USA300TCH1516_ALE/2541729‑2541909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |