| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 318807 = | 83 (0.290) | 29 (0.110) | 9/150 | NT | 32.6% | intergenic (+170/‑58) | USA300HOU_RS01425/USA300TCH1516_00272 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1443642 | 42 (0.160) | intergenic (‑215/+138) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein | |||||
AAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATT > USA300TCH1516_ALE/1443552‑1443718 | aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 2:2579497/1‑91 (MQ=34)aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 1:150888/1‑91 (MQ=34)aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 2:1779950/1‑91 (MQ=34)aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc < 2:4690038/91‑1 (MQ=34)aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc < 2:2912713/91‑1 (MQ=34) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACg < 1:3514878‑M2/91‑2 (MQ=255) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACg > 1:1710389‑M2/1‑90 (MQ=255) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACg < 2:4582446‑M2/91‑2 (MQ=255) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACg < 1:767535‑M2/91‑2 (MQ=255) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACg < 2:4405722‑M2/91‑2 (MQ=255) ttaTTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACTGAGGCTGAGACgg < 2:4509428‑M2/90‑3 (MQ=255) gTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCGAGTCGAAGACCGAGGCTGAGACgg < 1:5355062‑M2/91‑3 (MQ=255) gTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACgg > 1:4450618‑M2/1‑89 (MQ=255) tATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACggc > 2:3100268‑M2/1‑88 (MQ=255) aTTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACggca > 2:3886209‑M2/1‑87 (MQ=255) ttCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCAcc < 1:232080/91‑1 (MQ=34) tCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCAccc > 2:5424796/1‑91 (MQ=34) cAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCt < 1:1343402/91‑1 (MQ=34) aaaaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCt < 1:2300854/90‑1 (MQ=17) aaaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTa > 1:5362899/1‑91 (MQ=34) aaaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTACTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGAACACTa > 2:3686530/1‑91 (MQ=255) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg < 2:2125487/91‑1 (MQ=34) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg < 2:1754736/91‑1 (MQ=34) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg < 1:3958608/91‑1 (MQ=34) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg < 2:772211/91‑1 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCTGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 2:3315840/91‑1 (MQ=18) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 2:1193833/91‑1 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 1:3477575/91‑1 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 1:2652263/91‑1 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 1:2214608/91‑1 (MQ=33) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 1:5015559/91‑1 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg > 2:1834153/1‑91 (MQ=34) gTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGa > 1:2749622/1‑91 (MQ=33) gTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGa < 2:1729992/91‑1 (MQ=34) aaaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaaa > 2:195143/1‑91 (MQ=34) aaaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaaa < 1:5039484/91‑1 (MQ=33) aaaTTACACGTTAATACGTAGTCTTAATGGCGAGACTCCAGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGagag > 1:1742647/1‑91 (MQ=255) aaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACggcactgctccctca > 2:1598759‑M2/1‑76 (MQ=255) aaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAg > 2:901282/1‑91 (MQ=34) aaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAg < 1:5006280/91‑1 (MQ=33) aaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAg > 2:2256891/1‑91 (MQ=34) aaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAg > 1:2965200/1‑91 (MQ=34) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc > 2:640127/1‑91 (MQ=34) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc > 1:1642266/1‑91 (MQ=34) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc < 1:1648963/91‑1 (MQ=34) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc < 1:377475/91‑1 (MQ=34) aTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCg > 2:3679705/1‑91 (MQ=33) aTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCg > 1:5643259/1‑91 (MQ=34) aTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCg < 1:19763/91‑1 (MQ=34) ttACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGa > 2:4991264/1‑91 (MQ=34) ttACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGa < 1:2130547/91‑1 (MQ=34) ttACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGa > 2:4991303/1‑91 (MQ=34) ttACACGTTAATACGTAGTATTAATGGCGAGACGCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGa > 1:5629231/1‑91 (MQ=21) tACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGaa < 2:82989/91‑1 (MQ=33) acacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAg > 2:1088306/1‑91 (MQ=34) acacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAg > 2:1088035/1‑91 (MQ=34) acacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAg > 2:1002400/1‑91 (MQ=34) acacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAg > 2:1763157/1‑91 (MQ=34) cacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGc > 2:29386/1‑91 (MQ=33) cacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGc > 2:1424818/1‑91 (MQ=33) acGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGcc > 2:1700257/1‑91 (MQ=32) acGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGcc > 2:5103646/1‑91 (MQ=32) acGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGcc < 2:5048286/91‑1 (MQ=32) acGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGcc > 2:4659897/1‑91 (MQ=32) acGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGcc > 2:3988020/1‑91 (MQ=32) acGTTAATACGTAGTATTAATGGCGAGACTCCTCAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGcc > 1:5603904/1‑91 (MQ=17) cGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCa < 2:4468070/91‑1 (MQ=31) cGTTAATACGTAGTATTAATGGCGAGACTACTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCa > 2:1915675/1‑91 (MQ=14) tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACggcactgctccctcaggagtctcgccattaata < 1:4091004‑M2/91‑34 (MQ=255) gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaatttt < 1:2080176‑M2/91‑56 (MQ=255) aGCAGTGCCAGTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttt < 2:107847‑M2/91‑61 (MQ=255) gCAGTGCCAGTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacgtgtaattttactttg < 2:4540175‑M2/91‑62 (MQ=255) aGTGCCAGTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacgtgtaattttactttgaa < 1:4352055‑M2/91‑64 (MQ=255) aGTGCCAGTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacgtgtaattttactttgaa < 1:4352276‑M2/91‑64 (MQ=255) ccAGTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaaatac < 1:2219245‑M2/91‑68 (MQ=255) cAGTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatact < 1:4159662‑M2/91‑69 (MQ=255) aGTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatactt < 1:3789061‑M2/91‑70 (MQ=255) gTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatacttt < 2:2538238‑M2/91‑71 (MQ=255) gTCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatacttt < 1:1824525‑M2/91‑71 (MQ=255) tCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacgtgtaattttactttgaaatacttta < 2:57969‑M2/91‑72 (MQ=255) tCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaaatactttg < 1:4809452‑M2/91‑72 (MQ=255) tCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatacttta < 1:1293786‑M2/91‑72 (MQ=255) tCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatacttta < 2:3262499‑M2/91‑72 (MQ=255) tCGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatacttta < 1:1175161‑M2/91‑72 (MQ=255) cGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatactttta < 2:3459970‑M2/91‑73 (MQ=255) cGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaaatactttaa < 2:3561683‑M2/91‑73 (MQ=255) cGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatactttaa < 2:1165797‑M2/91‑73 (MQ=255) cGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatactttaa < 2:1323494‑M2/91‑73 (MQ=255) cGAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaataccacgtattaacatgtaattttacttatacatactttaa < 2:3612919‑M2/91‑73 (MQ=255) cGAAGACCAAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacaagtaattttactttgaaatacttaaa < 2:5244253‑M2/91‑73 (MQ=255) gAAGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaaatactttgaa < 2:3003311‑M2/91‑74 (MQ=255) gAAGACCAAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatacttttaa < 1:2339149‑M2/91‑74 (MQ=255) aaGACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttacatacttttaaa < 2:5395068‑M2/91‑75 (MQ=255) aaGACCAAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatacttttaaa < 2:2512011‑M2/91‑75 (MQ=255) gACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttacttttaaatactttaaaaaa < 1:151987‑M2/91‑77 (MQ=255) gACCGAGGCTGAGACggcactgctccctcaggagtctcgccattaatactacgtattaacatgtaattttactttgaaatactttaaaaaa < 2:1974704‑M2/91‑77 (MQ=255) | AAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATT > USA300TCH1516_ALE/1443552‑1443718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |