New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 365040246 (0.860)15 (0.060) 10/136 NT 6.4% intergenic (+50/+55) nupC_1/sglT Nucleoside permease NupC/Sodium/glucose cotransporter
?USA300TCH1516_ALE = 365070 233 (0.960)intergenic (+80/+25) nupC_1/sglT Nucleoside permease NupC/Sodium/glucose cotransporter

Only 100 of 396 total aligned reads displayed.

TAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCC  >  USA300TCH1516_ALE/364980‑365160
                                                                                          |                                                                                          
 aGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg                                                                                           <  1:358252‑M2/91‑2 (MQ=255)
    acatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGa                                                                                        >  2:2234616‑M1/46‑91 (MQ=255)
    aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtga                                                                                        >  2:4439289‑M2/1‑87 (MQ=255)
     ttGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgac                                                                                       >  2:201684‑M2/1‑86 (MQ=255)
      tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg                                                                                      <  2:2771565‑M2/91‑7 (MQ=255)
      tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg                                                                                      <  1:347848‑M2/91‑7 (MQ=255)
      tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg                                                                                      <  2:2527859‑M2/91‑7 (MQ=255)
      tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg                                                                                      <  2:2407946‑M2/91‑7 (MQ=255)
       gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg                                                                                     >  1:894191‑M2/1‑84 (MQ=255)
       gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg                                                                                     <  2:712091‑M2/91‑8 (MQ=255)
        gaaatGAATCGAAGTACCGAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGAAACAGCGCATCATAACTTAgtgacggg                                                                                    >  2:647055‑M2/2‑83 (MQ=255)
           aTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAAGCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtt                                                                                 >  2:5636289‑M2/1‑80 (MQ=255)
           aTGAATCGAAGTACCCAAATTAGATTAATGGCAAAGCTAAACCCCTTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtt                                                                                 >  2:5551220‑M2/1‑80 (MQ=255)
             gAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGtttt                                                                               <  1:1843872/91‑1 (MQ=255)
                tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                                                            >  1:1003268/1‑91 (MQ=255)
                  gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt                                                                          <  1:560902/91‑1 (MQ=255)
                   aaGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATa                                                                         >  1:933511/1‑91 (MQ=255)
                   aaGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATa                                                                         >  1:173544/1‑91 (MQ=255)
                    aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATaa                                                                        >  2:2051294/1‑91 (MQ=255)
                      tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa                                                                      >  1:5108502/1‑91 (MQ=255)
                       aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa                                                                     >  2:2553723/1‑91 (MQ=255)
                        ccTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAAt                                                                    >  2:5307185/1‑91 (MQ=255)
                         cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc                                                                   <  1:210001/91‑1 (MQ=255)
                            aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGCTTTATCATAACAATCTAc                                                                >  1:341480/1‑91 (MQ=255)
                              ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt                                                              >  1:2927120/1‑91 (MQ=255)
                              ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt                                                              >  1:3059997/1‑91 (MQ=255)
                              ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt                                                              >  2:1520773/1‑91 (MQ=255)
                              ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt                                                              >  1:1244294/1‑91 (MQ=255)
                               taaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt                                                             <  1:551660/91‑1 (MQ=255)
                               taaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt                                                             <  1:1007882/91‑1 (MQ=255)
                               taaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt                                                             <  2:1844398/91‑1 (MQ=255)
                                 aattCATGGGAAAGCTCAACCCCGTCACCCAGTTGGCGCAACAGCGCATCATAACTTCGTGACGGGGTTTTATCATCACAGTCTACttttt                                                           >  1:5172945/1‑91 (MQ=255)
                                 aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt                                                           >  2:3758695/1‑91 (MQ=255)
                                  attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc                                                          >  2:1311647/1‑91 (MQ=255)
                                   ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg                                                         >  2:5252509/1‑91 (MQ=255)
                                    tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt                                                        >  1:508060/1‑91 (MQ=255)
                                    tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt                                                        >  2:2822194/1‑91 (MQ=255)
                                     cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa                                                       >  1:4595615/1‑91 (MQ=255)
                                     cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa                                                       <  2:1041724/91‑1 (MQ=255)
                                     cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa                                                       <  1:2711573/91‑1 (MQ=255)
                                       tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc                                                     >  1:3214474/1‑91 (MQ=255)
                                        ggCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATTATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc                                                    <  1:1311252/91‑1 (MQ=255)
                                        ggCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc                                                    >  1:1917781/1‑91 (MQ=255)
                                         gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg                                                   <  1:3686814/91‑1 (MQ=255)
                                          cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt                                                  >  2:2971060/1‑91 (MQ=255)
                                           aaaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCgat                                                 >  1:3113682/1‑89 (MQ=255)
                                           aaaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtt                                                 >  2:1093797/1‑91 (MQ=255)
                                            aaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt                                                >  2:486481/1‑91 (MQ=255)
                                                tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa                                            <  2:2906071/91‑1 (MQ=255)
                                                  AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa                                          <  1:4817559‑M1/91‑1 (MQ=255)
                                                  AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa                                          >  1:1619375‑M1/1‑91 (MQ=255)
                                                   ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat                                         <  2:4019377‑M1/91‑1 (MQ=255)
                                                    ccccGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcattt                                        <  1:1128898‑M2/91‑53 (MQ=255)
                                                    CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                        >  1:4770435‑M1/1‑91 (MQ=255)
                                                    CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                        >  1:3614317‑M1/1‑91 (MQ=255)
                                                     CCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGATGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt                                       >  1:5484034‑M1/1‑91 (MQ=255)
                                                      CCGTCACCGAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgta                                      <  1:2853254‑M1/91‑1 (MQ=255)
                                                       CGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat                                     <  1:2624628‑M1/91‑1 (MQ=255)
                                                          CACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGtt                                  <  1:5367178‑M1/91‑1 (MQ=255)
                                                          CACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGtt                                  <  2:2105826‑M1/91‑1 (MQ=255)
                                                           ACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTg                                 <  1:3766783‑M1/91‑1 (MQ=255)
                                                            CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa                                >  1:2376427‑M1/1‑91 (MQ=255)
                                                            CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa                                >  1:4991277‑M1/1‑91 (MQ=255)
                                                              aaGTTGGCGCAACAGCGTATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaa                              <  1:4278874‑M2/91‑63 (MQ=255)
                                                              aaGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaa                              <  1:1463946‑M2/91‑63 (MQ=255)
                                                              aaGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATg                              >  1:3275623/1‑91 (MQ=255)
                                                               aggtGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                             <  2:3149022/88‑1 (MQ=255)
                                                               aGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaag                             <  2:3480565‑M2/91‑64 (MQ=255)
                                                               aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAATAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                             >  1:5498756/1‑91 (MQ=255)
                                                               aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                             <  1:4554598/91‑1 (MQ=255)
                                                               aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                             <  2:413459/91‑1 (MQ=255)
                                                               aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                             <  1:1380835/91‑1 (MQ=255)
                                                                gTTGGCGCAACAGCGCATCATAACATAgtgacggggtttagctttgccatgaatttaatttaggtactccgattcgtttacaacactaagc                            <  2:4640720‑M2/91‑65 (MQ=255)
                                                                    gcgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTAt                        >  2:838498/1‑91 (MQ=255)
                                                                    gcgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTAt                        <  1:3868323/91‑1 (MQ=255)
                                                                     cgcAACAGCGCATCATAACTTAGTGACGGTGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATc                       >  2:1915563/1‑91 (MQ=255)
                                                                     cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATc                       >  1:1346395/1‑91 (MQ=255)
                                                                     cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATc                       >  2:4554955/1‑91 (MQ=255)
                                                                      gcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCt                      >  1:4201746/1‑91 (MQ=255)
                                                                      gcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCt                      >  1:621909/1‑91 (MQ=255)
                                                                       cAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTaaaat                     <  2:1003268/91‑5 (MQ=255)
                                                                       cAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtt                     >  1:589070/1‑91 (MQ=255)
                                                                         aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt                   <  2:755802/91‑1 (MQ=255)
                                                                         aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt                   >  2:1206026/1‑91 (MQ=255)
                                                                           aGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTc                 <  2:3315246/91‑1 (MQ=255)
                                                                           aGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTc                 <  2:5058421/91‑1 (MQ=255)
                                                                              gcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa              >  1:833194/1‑91 (MQ=255)
                                                                               catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa             >  2:4753570/1‑91 (MQ=255)
                                                                               catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa             >  2:3094377/1‑91 (MQ=255)
                                                                                 tcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAAt           >  1:721900/1‑91 (MQ=255)
                                                                                   atAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTg         <  2:5581151/91‑1 (MQ=255)
                                                                                    tAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTAAAATAATCAAAAATTGt        <  2:1660371/91‑1 (MQ=255)
                                                                                     aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt       <  2:2701570/91‑1 (MQ=255)
                                                                                     aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt       <  2:5387421/91‑1 (MQ=255)
                                                                                      aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa      >  2:3916740/1‑91 (MQ=255)
                                                                                      aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa      >  2:1423379/1‑91 (MQ=255)
                                                                                      aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa      >  1:4081067/1‑91 (MQ=255)
                                                                                       cTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTaa     <  2:3232708/91‑1 (MQ=255)
                                                                                         tAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATc   >  1:5220252/1‑91 (MQ=255)
                                                                                          aGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATcc  >  1:3308695/1‑91 (MQ=255)
                                                                                          |                                                                                          
TAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCC  >  USA300TCH1516_ALE/364980‑365160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.