New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 710532299 (1.040)16 (0.060) 11/142 NT 5.7% intergenic (+25/+36) tarA/tagH_1 N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH
?USA300TCH1516_ALE = 710552 264 (1.040)intergenic (+45/+16) tarA/tagH_1 N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH

Only 100 of 380 total aligned reads displayed.

GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAAA  >  USA300TCH1516_ALE/710462‑710642
                                                                                          |                                                                                          
gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt                                                                                            >  2:4210170/1‑91 (MQ=255)
gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt                                                                                            >  1:71792/1‑91 (MQ=255)
   taAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTATATGGAGATTctc                                                                                         <  2:3738812‑M2/91‑4 (MQ=255)
    aaaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcg                                                                                        >  1:3472344‑M2/1‑87 (MQ=255)
     aaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcgg                                                                                       >  1:2914564‑M2/1‑86 (MQ=255)
      aaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggt                                                                                      >  1:913522‑M2/1‑85 (MQ=255)
       aTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtt                                                                                     <  1:1341246‑M2/91‑8 (MQ=255)
         aGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtttt                                                                                   >  2:811924‑M2/1‑82 (MQ=255)
          gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt                                                                                  >  1:990860/1‑91 (MQ=255)
          gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt                                                                                  >  1:580460/1‑91 (MQ=255)
          gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt                                                                                  >  1:3723101/1‑91 (MQ=255)
           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 >  2:3993149/1‑91 (MQ=255)
           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 >  2:4334207/1‑91 (MQ=255)
            cAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTc                                                                                >  1:2644410/1‑91 (MQ=255)
             aaaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCg                                                                               >  1:1009332/1‑91 (MQ=255)
             aaaGAAAAAAAAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCg                                                                               <  2:3167646/91‑1 (MQ=255)
              aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg                                                                              >  2:5625367/1‑91 (MQ=255)
              aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg                                                                              <  2:5312500/91‑1 (MQ=255)
               aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt                                                                             <  1:2677748/91‑1 (MQ=255)
               aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt                                                                             >  2:4413018/1‑91 (MQ=255)
               aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt                                                                             >  2:2879166/1‑91 (MQ=255)
                 aaaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttt                                                                           <  2:297229/90‑1 (MQ=255)
                  aaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttta                                                                          <  2:483196/91‑1 (MQ=255)
                   aaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttat                                                                         <  1:691641/91‑1 (MQ=255)
                   aaaaGAAAAATAAAAAAGGAGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttat                                                                         <  2:1440623/91‑1 (MQ=255)
                    aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt                                                                        >  1:2601710/1‑91 (MQ=255)
                    aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt                                                                        >  1:4187235/1‑91 (MQ=255)
                    aaaGAAAAATAAAAAAGGCGAAATAATCATCATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCAGtttatt                                                                        >  1:4493118/1‑91 (MQ=255)
                      aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta                                                                      >  2:3145152/1‑91 (MQ=255)
                      aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta                                                                      >  1:5114440/1‑91 (MQ=255)
                      aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta                                                                      >  1:5052791/1‑91 (MQ=255)
                       gAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaa                                                                     >  1:1448619/1‑91 (MQ=255)
                       gAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaa                                                                     >  2:1902760/1‑91 (MQ=255)
                        aaaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaat                                                                    >  1:4264553/1‑91 (MQ=255)
                        aaaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaat                                                                    <  1:1914977/91‑1 (MQ=255)
                         aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata                                                                   <  2:3361567/91‑1 (MQ=255)
                         aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata                                                                   >  1:2758399/1‑91 (MQ=255)
                          aaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaataa                                                                  >  2:640351/1‑91 (MQ=255)
                           aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc                                                                 <  1:1557170/91‑1 (MQ=255)
                            aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg                                                                <  2:1231978/91‑1 (MQ=255)
                            aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg                                                                >  1:1183075/1‑91 (MQ=255)
                              aaaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGaa                                                              >  2:2317794/1‑91 (MQ=255)
                                aaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGc                                                            >  1:124853/1‑91 (MQ=255)
                                 aaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCg                                                           >  2:1949473/1‑91 (MQ=255)
                                 aaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCg                                                           <  1:4821641/91‑1 (MQ=255)
                                     gCGAAATAATAAGGATGACAAAAATAAAACCGAGGAAAACCTTAAATGGAGATTCTCGGTTTTTGCGGTTTATTTAATAACGAAGCGGGAc                                                       <  2:552816/91‑1 (MQ=255)
                                      cGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACt                                                      >  1:1049601/1‑91 (MQ=255)
                                        aaaTAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCa                                                    >  2:350977/1‑91 (MQ=255)
                                         aataatCATGATGACAAAAATAAAACCGCGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   >  2:5407269/1‑91 (MQ=255)
                                         aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   >  2:1709395/1‑91 (MQ=255)
                                         aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   >  1:2524935/1‑91 (MQ=255)
                                         aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   <  2:5577872/91‑1 (MQ=255)
                                         aataatCATGATGACAAAAATAAAACCGAGGAAATACTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   <  2:5077638/91‑1 (MQ=255)
                                          ataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATc                                                  >  2:2458109/1‑91 (MQ=255)
                                           taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg                                                 <  2:2553888/91‑1 (MQ=255)
                                            aatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGa                                                >  2:4760044/1‑91 (MQ=255)
                                             atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg                                               <  1:807413/91‑1 (MQ=255)
                                              tCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAGTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgt                                              <  2:3536479/91‑1 (MQ=255)
                                               cATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtt                                             <  2:2205565/91‑1 (MQ=255)
                                                atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt                                            >  2:1592491/1‑91 (MQ=255)
                                                atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt                                            >  2:2760741/1‑91 (MQ=255)
                                                atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt                                            <  1:527432/91‑1 (MQ=255)
                                                atgatgACAAAAATAAAACCGAGGAAAACCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt                                            <  2:2670076/91‑1 (MQ=255)
                                                  gatgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgt                                          >  1:4800179/1‑91 (MQ=255)
                                                   atgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgtt                                         <  1:20188/91‑1 (MQ=255)
                                                      aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt                                      <  1:2225747/91‑1 (MQ=255)
                                                      aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt                                      <  2:609210/91‑1 (MQ=255)
                                                        aaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaa                                    >  2:5339149/1‑91 (MQ=255)
                                                         aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTTTTTTTTTTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa                                   >  2:2101062/1‑91 (MQ=255)
                                                         aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa                                   >  1:453121/1‑91 (MQ=255)
                                                         aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa                                   <  1:3015666/91‑1 (MQ=255)
                                                           aaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAtt                                 <  1:4613706/91‑1 (MQ=255)
                                                                 aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt                           >  2:4246589/1‑91 (MQ=255)
                                                                 aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt                           >  2:3268450/1‑91 (MQ=255)
                                                                   cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGTGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt                         <  1:5608592/91‑1 (MQ=255)
                                                                   cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt                         <  1:3875062/91‑1 (MQ=255)
                                                                    gAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGtt                        <  2:4558252/91‑1 (MQ=255)
                                                                       gacaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCgg                     <  2:4988499/88‑1 (MQ=255)
                                                                         aaTCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacat                   <  1:1697544‑M2/91‑74 (MQ=255)
                                                                          aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt                  <  1:2440985/91‑1 (MQ=255)
                                                                          aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt                  <  1:2943198/91‑1 (MQ=255)
                                                                          aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt                  <  1:3496459/91‑1 (MQ=255)
                                                                           tCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacataa                 <  1:6640‑M2/91‑76 (MQ=255)
                                                                           tCCTTAAATGGACATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCttt                 <  2:3639399/91‑1 (MQ=255)
                                                                            ccTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTg                <  2:384070/91‑1 (MQ=255)
                                                                             cTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTgg               >  1:619751/1‑91 (MQ=255)
                                                                             cTTAAATGGAGATTCTCGGTTGTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTGGTTTCTAAATTCTTTTTGTTCGGCTTTgg               >  2:1546070/1‑91 (MQ=255)
                                                                              ttAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGa              <  1:1630494/91‑1 (MQ=255)
                                                                                aaaTGGAGATTCTCGGTTTTTTTTTTTTTTTTTATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAtt            >  2:2285083/1‑91 (MQ=255)
                                                                                aaaTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAtt            <  1:1299845/91‑1 (MQ=255)
                                                                                    ggAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtt        <  1:3193324/91‑1 (MQ=255)
                                                                                      agaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtttt      >  1:4915032/1‑91 (MQ=255)
                                                                                      agaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtttt      <  2:3091034/91‑1 (MQ=255)
                                                                                      agaTTCTCGGTTTTTTCGGTTTATTTAAGAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtttt      <  1:5451595/91‑1 (MQ=255)
                                                                                       gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt     <  1:524046/91‑1 (MQ=255)
                                                                                       gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt     <  1:4326083/91‑1 (MQ=255)
                                                                                       gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt     <  1:3641358/91‑1 (MQ=255)
                                                                                          tctcGGTTTTTTTTGTTTTTTTAATAACGAAGCGGGTCTCATCGAGTTTGTTTCTATATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaaa  >  2:4894992/1‑91 (MQ=255)
                                                                                          tctcGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTTAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaaa  <  1:3988267/91‑1 (MQ=255)
                                                                                          tctcGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaaa  <  2:74665/91‑1 (MQ=255)
                                                                                          |                                                                                          
GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAAA  >  USA300TCH1516_ALE/710462‑710642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.