New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1058109220 (0.770)19 (0.070) 12/144 NT 8.2% intergenic (+150/+57) slyA_2/atl_1 Transcriptional regulator SlyA/Bifunctional autolysin
?USA300TCH1516_ALE = 1058143 225 (0.870)intergenic (+184/+23) slyA_2/atl_1 Transcriptional regulator SlyA/Bifunctional autolysin

Only 100 of 283 total aligned reads displayed.

TTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGA  >  USA300TCH1516_ALE/1058053‑1058233
                                                                                          |                                                                                          
   aTGGTAAACAATCACCGCTATTTTTGCTTGTTTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTttt                                                                                         <  2:3112061‑M2/91‑4 (MQ=255)
   aTGGTAAACAATCACCGCTATTTTTGCTTGTCTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGCGATGACTttt                                                                                         <  1:5165626‑M2/91‑4 (MQ=255)
    tGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGAGGATGACTtttt                                                                                        <  2:3598141‑M2/91‑5 (MQ=255)
      gTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTtttgat                                                                                      <  1:3468239‑M2/91‑7 (MQ=255)
      gTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTtttgat                                                                                      <  2:2396469‑M2/91‑7 (MQ=255)
             aTCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGt                                                                               <  2:5410600/91‑1 (MQ=255)
               cACCGCTATTTTTTCTTTTTTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGCTCCTATGTTc                                                                             >  2:2557471/1‑91 (MQ=255)
               cACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTc                                                                             >  1:658760/1‑91 (MQ=255)
               cACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGAACAAAGGTCATCCCCCATGATTGATAGCGGGGGATGACTTTTGATCCTATGTTc                                                                             >  1:335974/1‑91 (MQ=255)
                aCCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCCTCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCa                                                                            >  2:5465013/1‑91 (MQ=255)
                 ccGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCAt                                                                           >  2:3214526/1‑91 (MQ=255)
                  cGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATg                                                                          >  1:2365157/1‑91 (MQ=255)
                  cGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATg                                                                          <  2:4076546/91‑1 (MQ=255)
                   gCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGt                                                                         <  1:3847827/91‑1 (MQ=255)
                   gCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGt                                                                         <  2:2236607/91‑1 (MQ=255)
                          ttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttat                                                                  <  2:3834627/91‑1 (MQ=255)
                          ttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttat                                                                  <  1:3958050/91‑1 (MQ=255)
                          ttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttat                                                                  <  2:5020862/91‑1 (MQ=255)
                          ttGCTCGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTACGTTCATGTTGCttat                                                                  >  2:5540512/1‑91 (MQ=255)
                           tGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttatt                                                                 >  1:5563992/1‑91 (MQ=255)
                           tGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttatt                                                                 <  1:899018/91‑1 (MQ=255)
                           tGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttatt                                                                 <  1:568947/91‑1 (MQ=255)
                            gCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattt                                                                >  1:4130309/1‑91 (MQ=255)
                            gCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattt                                                                <  1:2947804/91‑1 (MQ=255)
                            gCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattt                                                                <  1:725062/91‑1 (MQ=255)
                             cTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattta                                                               >  2:1229768/1‑91 (MQ=255)
                             cTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattta                                                               <  1:5300914/91‑1 (MQ=255)
                                  gtatgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGGTAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATtg                                                          >  2:5221203/1‑91 (MQ=255)
                                  gtatgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATtg                                                          >  2:1008037/1‑91 (MQ=255)
                                   tatgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATtgt                                                         >  1:3244236/1‑91 (MQ=255)
                                   tatgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATtgt                                                         >  1:2622868/1‑91 (MQ=255)
                                   tatgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATtgt                                                         <  1:784475/91‑1 (MQ=255)
                                   tatgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATtgt                                                         <  1:407992/91‑1 (MQ=255)
                                     tgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTgg                                                       <  1:1807929/91‑1 (MQ=255)
                                      gtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTggg                                                      >  1:3561482/1‑91 (MQ=255)
                                         taAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATg                                                   >  1:4818955/1‑91 (MQ=255)
                                           aaaaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTc                                                 >  1:3386979/1‑91 (MQ=255)
                                            aaaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCg                                                <  2:3253303/91‑1 (MQ=255)
                                             aaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGa                                               <  1:3494231/91‑1 (MQ=255)
                                             aaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGa                                               >  2:3712486/1‑91 (MQ=255)
                                               aGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAg                                             <  2:1202038/91‑1 (MQ=255)
                                               aGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAg                                             >  1:4570691/1‑91 (MQ=255)
                                               aGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAg                                             <  1:2256893/91‑1 (MQ=255)
                                                gggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGt                                            >  1:3079018/1‑91 (MQ=255)
                                                 ggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTa                                           >  2:701102/1‑91 (MQ=255)
                                                 ggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTa                                           >  2:3940184/1‑91 (MQ=255)
                                                  gATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAt                                          >  1:3666361/1‑91 (MQ=255)
                                                   aTCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAtt                                         >  1:3161615/1‑91 (MQ=255)
                                                   aTCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAtt                                         >  1:1509121/1‑91 (MQ=255)
                                                    tCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAttt                                        >  1:5419185/1‑91 (MQ=255)
                                                    tCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTAttt                                        >  2:769681/1‑91 (MQ=255)
                                                     cAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTg                                       >  1:1231050/1‑91 (MQ=255)
                                                      aaaGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGc                                      >  2:4680591/1‑91 (MQ=255)
                                                      aaaGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGc                                      <  1:1880538/91‑1 (MQ=255)
                                                      aaaGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGc                                      <  2:2014007/91‑1 (MQ=255)
                                                       aaGGTCATCCCCCATGATGGATAGTGGGGGATGACTTGTGTTCCTATGTTCATGTTGCTTAGTTATATTGTGGGATGTCGAAGTATTTGcc                                     <  2:1988011/91‑1 (MQ=255)
                                                        aGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGc                                      <  2:1448580/89‑1 (MQ=255)
                                                        aGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGc                                      >  1:1448580/1‑89 (MQ=255)
                                                          gTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGAc                                  >  1:5010410/1‑91 (MQ=255)
                                                           tCATCCCCCATGATTGATAGTGGGGGATGACTtttgatcccttttttatacatacacaatcaaaaatagcggtgattgtttaccatcaatt                                 <  1:5234239‑M2/91‑60 (MQ=255)
                                                           tCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACt                                 <  2:2822454/91‑1 (MQ=255)
                                                            cATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACtt                                <  1:2134808/91‑1 (MQ=255)
                                                            cATCCCCCATGATTGATAGTGGGGGATGACTTTCGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACtt                                >  1:5599893/1‑91 (MQ=255)
                                                              ttccccATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTGATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCg                              <  2:3328318/89‑1 (MQ=255)
                                                              tCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCCTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCg                              >  2:2735270/1‑91 (MQ=255)
                                                                ccccATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGcc                            <  1:1649138/91‑1 (MQ=255)
                                                                ccccATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGcc                            >  2:2081504/1‑91 (MQ=255)
                                                                  ccATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCaa                          >  2:5069520/1‑91 (MQ=255)
                                                                   cATGATTGATAGTGGGTGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAAt                         >  1:5188907/1‑91 (MQ=255)
                                                                    aTGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAAtt                        >  2:1175650/1‑91 (MQ=255)
                                                                     tgattgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAAttt                       >  2:2886091/1‑91 (MQ=255)
                                                                      gattgatAGTGGGGGATGACTTTCGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAAtttt                      <  2:2641284/91‑1 (MQ=255)
                                                                       attgatAGTGGGGGATGACTtttgatcccttttttatacaaacacaagcaaatatagcggtgattgtttaccatcagttttaacaatcacc                     <  1:4690727‑M2/91‑72 (MQ=255)
                                                                       attgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTa                     >  1:1294826/1‑91 (MQ=255)
                                                                        ttgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTAt                    <  2:2902091/91‑1 (MQ=255)
                                                                        ttgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTAt                    <  2:826767/91‑1 (MQ=255)
                                                                         tgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATc                   <  2:3962388/91‑1 (MQ=255)
                                                                         tgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATc                   >  2:4516484/1‑91 (MQ=255)
                                                                         tgatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATc                   >  2:566338/1‑91 (MQ=255)
                                                                          gatAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCa                  <  1:4511864/91‑1 (MQ=255)
                                                                           gtAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAt                 <  2:4884486/90‑1 (MQ=255)
                                                                           atAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAt                 >  1:1011524/1‑91 (MQ=255)
                                                                           atAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATGTGCCGACTTCGCCAATTTTATCAt                 <  1:5465013/91‑1 (MQ=255)
                                                                             aGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtag               >  1:4959402/1‑91 (MQ=255)
                                                                              gTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagt              >  1:2101541/1‑91 (MQ=255)
                                                                              gTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagt              <  1:2972338/91‑1 (MQ=255)
                                                                               tGGGGGATGTCTTTTGATCTTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGGAGTATTTGCCGACTTCGCCAATTTTATCAtagta             <  2:1037218/91‑1 (MQ=255)
                                                                               tGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagta             <  1:1861162/91‑1 (MQ=255)
                                                                               tGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagta             >  2:1823220/1‑91 (MQ=255)
                                                                               tGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCAtagta             <  2:1519017/91‑1 (MQ=255)
                                                                                 ggggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGc           <  2:5282942/91‑1 (MQ=255)
                                                                                  gggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGcc          <  2:3524397/91‑1 (MQ=255)
                                                                                  gggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGcc          <  2:1128570/91‑1 (MQ=255)
                                                                                   ggATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCt         >  1:3728143/1‑91 (MQ=255)
                                                                                      tGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtg      >  1:1976944/1‑91 (MQ=255)
                                                                                      tGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtg      <  2:190613/91‑1 (MQ=255)
                                                                                        aCTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtgat    <  1:5332491/91‑1 (MQ=255)
                                                                                        aCTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtgat    >  1:2644583/1‑91 (MQ=255)
                                                                                         cTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtgatg   >  1:1754765/1‑91 (MQ=255)
                                                                                         cTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTtgatg   <  1:4205688/91‑1 (MQ=255)
                                                                                          |                                                                                          
TTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGA  >  USA300TCH1516_ALE/1058053‑1058233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.