New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2102579220 (0.770)14 (0.050) 9/146 NT 6.2% intergenic (‑39/+277) USA300HOU_RS10625/USA300HOU_RS10630 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE = 2102583 220 (0.840)intergenic (‑43/+273) USA300HOU_RS10625/USA300HOU_RS10630 hypothetical protein/hypothetical protein

Only 100 of 284 total aligned reads displayed.

TTTTGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAGT  >  USA300TCH1516_ALE/2102493‑2102673
                                                                                          |                                                                                          
 tttGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTc                                                                                           <  2:3826847‑M2/91‑2 (MQ=255)
   tGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTccc                                                                                         >  2:1804582‑M2/1‑88 (MQ=255)
    ggATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccc                                                                                        <  1:3383972‑M2/91‑5 (MQ=255)
       tcttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccctct                                                                                     >  1:3413669‑M2/1‑84 (MQ=255)
       tcttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccctct                                                                                     <  1:1680099‑M2/91‑8 (MQ=255)
       tcttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTcccctct                                                                                     >  1:2741837‑M2/1‑84 (MQ=255)
         ttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTCTAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTa                                                                                   <  1:5492293/91‑1 (MQ=255)
         ttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTa                                                                                   >  2:67406/1‑91 (MQ=255)
         ttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTa                                                                                   <  2:4147955/91‑1 (MQ=255)
         ttctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTa                                                                                   >  2:2615828/1‑91 (MQ=255)
          tctACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTAt                                                                                  <  2:4843017/91‑1 (MQ=255)
             actaATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCt                                                                               <  2:5311372/91‑1 (MQ=255)
             actaATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCt                                                                               <  2:2356739/91‑1 (MQ=255)
                aaTTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCt                                                                            <  2:2441086/91‑1 (MQ=255)
                aaTTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCt                                                                            <  1:1032211/91‑1 (MQ=255)
                   tGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACa                                                                         >  1:5097837/1‑91 (MQ=255)
                   tGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGACGGGATGTCCCCTCTTATGCTTCTACa                                                                         >  2:5563405/1‑91 (MQ=255)
                    gAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACAt                                                                        >  1:842306/1‑91 (MQ=255)
                    gAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACAt                                                                        <  1:3211384/91‑1 (MQ=255)
                    gAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTGCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACAt                                                                        <  1:5586495/91‑1 (MQ=255)
                     aataatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACAtt                                                                       <  2:400909/91‑1 (MQ=255)
                      ataatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACAttt                                                                      <  2:961106/91‑1 (MQ=255)
                      ataatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACAttt                                                                      <  1:5071574/91‑1 (MQ=255)
                      ataatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACAttt                                                                      <  1:3291796/91‑1 (MQ=255)
                       taatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTa                                                                     >  1:1010609/1‑91 (MQ=255)
                       taatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTa                                                                     >  2:3710810/1‑91 (MQ=255)
                       taatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTa                                                                     >  1:4141689/1‑91 (MQ=255)
                       taatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTa                                                                     >  1:4550719/1‑91 (MQ=255)
                        aatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTAt                                                                    <  2:1086670/91‑1 (MQ=255)
                         atGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTAtt                                                                   >  2:2514520/1‑91 (MQ=255)
                          tGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTg                                                                  >  1:518430/1‑91 (MQ=255)
                          tGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTg                                                                  <  1:3138745/91‑1 (MQ=255)
                           gTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGt                                                                 >  2:3957325/1‑91 (MQ=255)
                           gTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGt                                                                 >  2:3512399/1‑91 (MQ=255)
                           gTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGt                                                                 >  1:146923/1‑91 (MQ=255)
                                gTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAg                                                            <  2:4446034/91‑1 (MQ=255)
                                gTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAg                                                            <  2:3450234/91‑1 (MQ=255)
                                 ttttAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAgt                                                           <  1:567283/91‑1 (MQ=255)
                                    tAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTc                                                        <  2:4514478/91‑1 (MQ=255)
                                     aaTTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCa                                                       >  2:1025943/1‑91 (MQ=255)
                                     aaTTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCa                                                       <  2:2035768/91‑1 (MQ=255)
                                     aaTTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCa                                                       >  1:3786830/1‑91 (MQ=255)
                                      aTTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCAc                                                      >  1:4241804/1‑91 (MQ=255)
                                       ttttGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACt                                                     >  2:1687372/1‑91 (MQ=255)
                                        tttGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTc                                                    >  1:580100/1‑91 (MQ=255)
                                         ttGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCa                                                   <  2:1241063/91‑1 (MQ=255)
                                          tGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCat                                                  <  1:1968785/91‑1 (MQ=255)
                                          tGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCat                                                  <  1:174540/91‑1 (MQ=255)
                                           gCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCata                                                 >  1:4434087/1‑91 (MQ=255)
                                              aTTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTa                                              <  2:4284672/91‑1 (MQ=255)
                                                tttATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTAcc                                            <  1:3555969/91‑1 (MQ=255)
                                                 ttATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCa                                           >  1:485647/1‑91 (MQ=255)
                                                   ataataCTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAAc                                         <  1:4862756/91‑1 (MQ=255)
                                                    taataCTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACa                                        <  1:1091338/91‑1 (MQ=255)
                                                      ataCTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACata                                      >  1:768498/1‑91 (MQ=255)
                                                      ataCTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTAGTGTTATAGTGTCACTCATATTACCAACata                                      >  1:4346614/1‑91 (MQ=255)
                                                       taCTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACatat                                     >  1:4656557/1‑91 (MQ=255)
                                                          tctcCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCt                                  <  2:438969/91‑1 (MQ=255)
                                                          tctcCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCt                                  <  2:2250577/91‑1 (MQ=255)
                                                           ctcCTTATTGTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTGCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCtt                                 <  2:1340512/91‑1 (MQ=255)
                                                            tcCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCttt                                >  1:4283811/1‑91 (MQ=255)
                                                            tcCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCttt                                <  2:594614/91‑1 (MQ=255)
                                                             ccTTATTTGCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTa                               <  2:4983799/91‑1 (MQ=255)
                                                              cTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTaa                              >  2:1165676/1‑91 (MQ=255)
                                                                 aTTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCg                           <  2:1926972/91‑1 (MQ=255)
                                                                 aTTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCg                           <  1:2395983/91‑1 (MQ=255)
                                                                  ttttCAAATAAAATAGAGGGGTTGTcccctctattttatttcaaaataaggagagtattataaaatgtcaaacttaaaacgtaacattatt                          <  2:5205398‑M2/91‑67 (MQ=255)
                                                                    ttCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTgg                        <  1:2336050/91‑1 (MQ=255)
                                                                      cAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCa                      <  2:5148628/91‑1 (MQ=255)
                                                                      cAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCa                      <  1:4790460/91‑1 (MQ=255)
                                                                          taaaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATAc                  >  1:2880188/1‑91 (MQ=255)
                                                                           aaaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATAcc                 <  2:5097722/91‑1 (MQ=255)
                                                                           aaaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATAcc                 >  2:3314774/1‑91 (MQ=255)
                                                                            aaataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCt                <  1:5624209/91‑1 (MQ=255)
                                                                             aataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCtt               >  2:2981034/1‑91 (MQ=255)
                                                                              ataGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTtg              <  1:1698418/91‑1 (MQ=255)
                                                                                agagGGGTTGTcccctctattttatttgaaaataaggcgagtattacaaaatggcaaaatcaacacgtaacattattcaatcagtagaaga            <  2:1582108‑M2/91‑81 (MQ=255)
                                                                                agagGGGTTGTcccctctattttatttgaaaataaggagagtattataaaattgcaaaattaaaacgtaacattattcaattattagaaga            <  2:4635934‑M2/91‑81 (MQ=255)
                                                                                agagGGGTTGTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaccgtaacagtattcaatcactagaaga            <  2:4517936‑M2/91‑81 (MQ=255)
                                                                                 gagGTGTTGTCCCCTCTTATGCTTCTACAGGTATTGTTATGGTGTCACTCATATTACCAACAGATGCTTTAACCGTGGCAATACCTTCTGc           <  2:3031495/91‑1 (MQ=255)
                                                                                 gagGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGc           >  2:2174002/1‑91 (MQ=255)
                                                                                 gagGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGc           <  1:1776024/91‑1 (MQ=255)
                                                                                 gagGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGc           >  1:2065816/1‑91 (MQ=255)
                                                                                 gagGGATTGTccaatctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattaaattagtagaagat           <  2:3484853‑M2/91‑82 (MQ=255)
                                                                                   ggggTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCtt         >  1:2504675/1‑91 (MQ=255)
                                                                                   ggggTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCtt         <  2:1449942/91‑1 (MQ=255)
                                                                                   ggggTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCtt         <  1:894539/91‑1 (MQ=255)
                                                                                    gggTTGTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatcca        <  2:2296927‑M2/91‑85 (MQ=255)
                                                                                    gggTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACTAACATATGCTTTAACCGTGGCAATACCTTGTGCTTc        >  2:2786390/1‑91 (MQ=255)
                                                                                      gTTGTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatccaaa      <  2:1742418‑M2/91‑87 (MQ=255)
                                                                                      gTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCg      <  2:2740392/91‑1 (MQ=255)
                                                                                      gTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCg      <  1:3745020/91‑1 (MQ=255)
                                                                                       ttGTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatccaaaa     <  1:2283612‑M2/91‑88 (MQ=255)
                                                                                        tGTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatccaaaag    <  2:317974‑M2/91‑89 (MQ=255)
                                                                                        tGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCa    <  2:4090672/91‑1 (MQ=255)
                                                                                         gTcccctctattttatttgaaaataaggagagtattataaaatggcaaaattaaaacgtaacattattcaattagtagaagatccaaaagc   <  1:1258138‑M2/91‑90 (MQ=255)
                                                                                         gTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAg   <  1:3674020/91‑1 (MQ=255)
                                                                                         gTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAg   <  2:2024939/91‑1 (MQ=255)
                                                                                         gTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAg   >  1:1645821/1‑91 (MQ=255)
                                                                                          tCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAGt  >  2:3105417/1‑91 (MQ=255)
                                                                                          |                                                                                          
TTTTGGATCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAGT  >  USA300TCH1516_ALE/2102493‑2102673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.