New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2207841 =283 (0.980)15 (0.060) 9/142 NT 6.0% intergenic (+202/+62) rodA/USA300HOU_RS11255 Peptidoglycan glycosyltransferase RodA/hypothetical protein
?USA300TCH1516_ALE 2207874 = 221 (0.870)intergenic (+235/+29) rodA/USA300HOU_RS11255 Peptidoglycan glycosyltransferase RodA/hypothetical protein

Only 100 of 346 total aligned reads displayed.

TCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTAAACGAG  >  USA300TCH1516_ALE/2207784‑2207964
                                                                                          |                                                                                          
tctAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTa                                                                                            <  2:3304190/91‑1 (MQ=255)
 ctAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCAAGAAAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTaa                                                                                           <  2:5187272/91‑1 (MQ=255)
   aaaGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACg                                                                                         <  1:4072800/91‑1 (MQ=255)
      gagGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtg                                                                                      <  2:703582/91‑1 (MQ=255)
      gagGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtg                                                                                      >  2:4328493/1‑91 (MQ=255)
       agGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgt                                                                                     >  2:1334993/1‑91 (MQ=255)
        gggATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgtg                                                                                    <  2:5302766/91‑1 (MQ=255)
         ggATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgtgt                                                                                   >  2:4132868/1‑91 (MQ=255)
         ggATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgtgt                                                                                   >  1:416222/1‑91 (MQ=255)
         ggATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgtgt                                                                                   >  2:1489957/1‑91 (MQ=255)
         ggATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgtgt                                                                                   >  1:2905545/1‑91 (MQ=255)
         ggATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgtgt                                                                                   >  1:4437613/1‑91 (MQ=255)
         ggATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgtgt                                                                                   >  1:52870/1‑91 (MQ=255)
         ggATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgtgt                                                                                   >  1:4753293/1‑91 (MQ=255)
          gATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGtgtgtg                                                                                  >  2:441288/1‑91 (MQ=255)
            ttttGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGAt                                                                                <  2:2814191/91‑1 (MQ=255)
            ttttGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGAt                                                                                <  2:5603070/91‑1 (MQ=255)
            ttttGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGAt                                                                                <  2:2250666/91‑1 (MQ=255)
            ttttGTTATATAGTACTAGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGAt                                                                                >  1:4284029/1‑91 (MQ=255)
              ttGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTc                                                                              <  1:97082/91‑1 (MQ=255)
              acgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcatcgaatagtccgacgatagctttAACGGTGTGTGATTc                                                                              <  2:3848635‑M2/15‑1 (MQ=255)
                gTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTcac                                                                            <  2:184049/91‑1 (MQ=255)
                  tatataGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACaa                                                                          >  1:1099770/1‑91 (MQ=255)
                   atataGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAAt                                                                         <  1:2024261/91‑1 (MQ=255)
                   atataGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAAt                                                                         <  1:4018037/91‑1 (MQ=255)
                   atataGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTCATTCACAAt                                                                         >  2:5359981/1‑91 (MQ=255)
                    tataGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATc                                                                        >  1:2296261/1‑91 (MQ=255)
                    tataGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATc                                                                        <  1:1289519/91‑1 (MQ=255)
                       aGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATcaca                                                                     <  1:3305631/91‑1 (MQ=255)
                        gTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAg                                                                    <  1:260278/91‑1 (MQ=255)
                         tACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGt                                                                   <  1:5066525/91‑1 (MQ=255)
                          aCTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTc                                                                  <  2:607719/91‑1 (MQ=255)
                          aCTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTc                                                                  >  1:5350149/1‑91 (MQ=255)
                            ttGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCaa                                                                >  1:1606801/1‑91 (MQ=255)
                             tGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAat                                                               >  1:3641272/1‑91 (MQ=255)
                             tGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAat                                                               >  2:1038975/1‑91 (MQ=255)
                              gCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAatt                                                              >  2:4627236/1‑91 (MQ=255)
                                tttCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAattat                                                            >  1:3480909/1‑91 (MQ=255)
                                 ttCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAattatt                                                           <  2:1855497/91‑1 (MQ=255)
                                 ttCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAattatt                                                           <  1:2399662/91‑1 (MQ=255)
                                   tgattgtgaatcacacaccgttAAAGCTATCATCGAATAGTCCGACGATATCTTTAACGGTGTGTGATTCACAATCACAGTCAATTAtttt                                                         >  2:3661555‑M1/23‑91 (MQ=255)
                                    gattgtgaatcacacaccgttAAAGCTATCGTCGGACTATTCGATGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTCTTTTa                                                        <  2:5438654‑M1/70‑1 (MQ=255)
                                       ttAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAAtt                                                     >  1:3148207/1‑91 (MQ=255)
                                       taaGTAAACCCATCCAAAAACGCTTTCACCGAATCGTCCGACGTTACTTTTAACGGTGTGGGATTCACAATCACAGTCATGTATTTTAAtt                                                     <  2:4708943/89‑1 (MQ=255)
                                        tAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTc                                                    <  2:4969398/91‑1 (MQ=255)
                                         aGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCg                                                   <  1:1543147/91‑1 (MQ=255)
                                         aGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCg                                                   >  2:4822016/1‑91 (MQ=255)
                                          gTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGt                                                  >  2:1354763/1‑91 (MQ=255)
                                           tAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTg                                                 >  1:1831134/1‑91 (MQ=255)
                                           tAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTg                                                 >  2:4190168/1‑91 (MQ=255)
                                              aTCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGact                                              <  2:4474914/91‑1 (MQ=255)
                                               tCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGactt                                             <  1:1218961/91‑1 (MQ=255)
                                               tCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGactt                                             <  2:4306767/91‑1 (MQ=255)
                                                 cAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGacttat                                           >  2:2796222/1‑90 (MQ=255)
                                                   gTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGacttactt                                         >  2:3871000/1‑91 (MQ=255)
                                                    tCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACttt                                        <  2:1160795/91‑1 (MQ=255)
                                                      aaaaaaGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTttat                                      >  1:3728344/1‑91 (MQ=255)
                                                      aaaaaaGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTttat                                      <  1:765019/91‑1 (MQ=255)
                                                       ttaaagctatcgtcggactattcgatgatagctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTttatt                                     >  2:3716288‑M2/36‑91 (MQ=255)
                                                       aaaaaGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTttatt                                     <  2:3148207/91‑1 (MQ=255)
                                                       aaaaaGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTAATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTttatt                                     >  2:5463335/1‑91 (MQ=255)
                                                        aaaaGCTATCATCGTATAGTCCGACGATAGCTTTAACGTTGTGTGATTCAGAATCACAGTCAATTATTTTAATTCGTGACTTACTttatta                                    <  1:4694385/91‑1 (MQ=255)
                                                        aaaaGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTttatta                                    >  1:5053142/1‑91 (MQ=255)
                                                        aaaaGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTttatta                                    >  2:5287345/1‑91 (MQ=255)
                                                         AAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAg                                   <  2:3496483‑M1/91‑1 (MQ=255)
                                                          AAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGa                                  <  2:2629879‑M1/91‑1 (MQ=255)
                                                           AGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTGAATTCGTGACTTACTTTATTAGAt                                 >  1:5461784‑M1/1‑91 (MQ=255)
                                                            GCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATg                                <  2:3959153‑M1/91‑1 (MQ=255)
                                                            GCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATg                                <  1:1122098‑M1/91‑1 (MQ=255)
                                                                tcgtcggactattcgatgatagctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTgg                            >  1:61888‑M2/27‑91 (MQ=255)
                                                                tcgtcggactattcgacgatagctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTgg                            >  2:3257657‑M2/27‑91 (MQ=255)
                                                                TCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTgg                            <  2:3181769‑M1/91‑1 (MQ=255)
                                                                TCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTgg                            >  1:2780214‑M1/1‑91 (MQ=255)
                                                                TCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTgg                            >  1:382240‑M1/1‑91 (MQ=255)
                                                                TCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTgg                            <  1:5582582‑M1/91‑1 (MQ=255)
                                                                TCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTgg                            <  2:25752‑M1/91‑1 (MQ=255)
                                                                 caacGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGc                           <  2:4988028/88‑1 (MQ=255)
                                                                   tcGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCaa                         >  2:835650/1‑91 (MQ=255)
                                                                     ggactattcgatgatagctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAg                       >  1:1655540‑M2/22‑91 (MQ=255)
                                                                     gAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAg                       >  1:342280/1‑91 (MQ=255)
                                                                      aaTAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTTAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGt                      <  2:5484842/91‑1 (MQ=255)
                                                                       aTAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTa                     >  2:2975268/1‑91 (MQ=255)
                                                                         aGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTAtt                   <  2:2335313/91‑1 (MQ=255)
                                                                          gTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATta                  >  2:1094192/1‑91 (MQ=255)
                                                                            ccGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATtaat                >  2:2718285/1‑91 (MQ=255)
                                                                            ccGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATtaat                >  2:743357/1‑91 (MQ=255)
                                                                            ccGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATtaat                >  1:2122397/1‑91 (MQ=255)
                                                                            ccGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATtaat                <  2:3792874/91‑1 (MQ=255)
                                                                            ccGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATtaat                >  1:3752034/1‑91 (MQ=255)
                                                                            ccGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATtaat                >  1:2648983/1‑91 (MQ=255)
                                                                             cgacgaTAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATtaata               >  1:5147553/1‑91 (MQ=255)
                                                                                    agctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTa        >  2:934997‑M2/7‑91 (MQ=255)
                                                                                    agctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTa        >  2:4579531‑M2/7‑91 (MQ=255)
                                                                                    agctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTa        >  2:2065958‑M2/7‑91 (MQ=255)
                                                                                    agctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTa        <  2:2905545‑M2/85‑1 (MQ=255)
                                                                                     gctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTaa       >  2:3086779‑M2/6‑91 (MQ=255)
                                                                                      ctttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTaaa      <  1:3127338‑M2/87‑1 (MQ=255)
                                                                                        ttAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTAAACg    <  1:2439330‑M2/89‑1 (MQ=255)
                                                                                         tAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTAAACGa   >  1:4547887‑M2/2‑91 (MQ=255)
                                                                                         tAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTAAACGa   <  1:1925866‑M2/90‑1 (MQ=255)
                                                                                          |                                                                                          
TCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTGGCAAAGTATTAATAATGTCTAAACGAG  >  USA300TCH1516_ALE/2207784‑2207964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.