New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2256396 =283 (0.980)13 (0.050) 6/132 NT 6.0% intergenic (+49/+72) deoD1/dps Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U
?USA300TCH1516_ALE 2256443 = 172 (0.730)intergenic (+96/+25) deoD1/dps Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U

Only 100 of 296 total aligned reads displayed.

TAAATTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACAT  >  USA300TCH1516_ALE/2256354‑2256533
                                                                                         |                                                                                          
tAAATTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttat                                                                                           <  1:1199134/91‑1 (MQ=255)
 aaaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttatt                                                                                          <  1:4945230/91‑1 (MQ=255)
  aaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattt                                                                                         <  2:587474/91‑1 (MQ=255)
   aTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCTAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattta                                                                                        <  1:4253114/91‑1 (MQ=255)
    ttGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTttatttat                                                                                       >  2:3112715/1‑91 (MQ=255)
     tGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTtata                                                                                      <  2:2826990/91‑1 (MQ=255)
     tGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTtata                                                                                      <  2:1596324/91‑1 (MQ=255)
     tGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTtata                                                                                      <  1:955750/91‑1 (MQ=255)
       aCTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtatt                                                                                    <  1:5365417/91‑1 (MQ=255)
       aCTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtatt                                                                                    <  1:4463975/91‑1 (MQ=255)
        cTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtatta                                                                                   >  1:2395477/1‑91 (MQ=255)
         tttAATTGCTCTTTAACAAGGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtattat                                                                                  <  1:1304112/91‑1 (MQ=255)
           tAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATAttatta                                                                                <  2:874808/91‑1 (MQ=255)
            aaTTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTAc                                                                               <  1:970109/91‑1 (MQ=255)
            aaTTGCTCTTTAACAATGCGAATAAACTAAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTAc                                                                               <  2:1749243/91‑1 (MQ=255)
             aTTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACt                                                                              <  2:3849009/91‑1 (MQ=255)
               tGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTa                                                                            <  2:2706405/91‑1 (MQ=255)
                gCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTAt                                                                           <  2:1093274/91‑1 (MQ=255)
                gCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTAt                                                                           >  1:2956917/1‑91 (MQ=255)
                 ctctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATc                                                                          <  1:3455643/91‑1 (MQ=255)
                  tctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCt                                                                         >  1:1061750/1‑91 (MQ=255)
                  tctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCt                                                                         >  1:3389089/1‑91 (MQ=255)
                  tctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCt                                                                         >  2:51695/1‑91 (MQ=255)
                   ctTTACCAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGAATCCCCATTTATGTGTTGGCTTTTATTTACATTATTACTTATCTg                                                                        >  2:5540794/1‑91 (MQ=255)
                   ctTTAACGATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        <  2:46052/91‑1 (MQ=255)
                   ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        >  2:786843/1‑91 (MQ=255)
                   ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        <  1:4757390/91‑1 (MQ=255)
                   ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        <  2:487894/91‑1 (MQ=255)
                   ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        <  1:3060153/91‑1 (MQ=255)
                       aaCAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGa                                                                    <  1:3154644/91‑1 (MQ=255)
                        aCAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGAt                                                                   <  2:2439076/91‑1 (MQ=255)
                         caacgCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGATTTTATTTATATTATTACTTATCTGTAGAtt                                                                  >  1:5247643/5‑91 (MQ=255)
                          aaTGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTa                                                                 <  2:2931437/91‑1 (MQ=255)
                           aTGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAg                                                                <  2:3662950/91‑1 (MQ=255)
                            tGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGc                                                               <  2:3367453/91‑1 (MQ=255)
                             gCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCt                                                              >  2:3310555/1‑91 (MQ=255)
                             gCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCt                                                              >  1:89461/1‑91 (MQ=255)
                             gCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCt                                                              >  2:606196/1‑91 (MQ=255)
                               gATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTta                                                            <  2:4251425/91‑1 (MQ=255)
                                aTTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaa                                                           <  1:3967227/91‑1 (MQ=255)
                                 ttAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaag                                                          >  1:1344448/1‑91 (MQ=255)
                                 ttAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaag                                                          <  2:4932636/91‑1 (MQ=255)
                                  tAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagt                                                         <  1:1552433/91‑1 (MQ=255)
                                   aaaCTCAAAAAGCCAACACATTCTGTGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagta                                                        <  2:5227879/91‑1 (MQ=255)
                                   aaaCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagta                                                        >  2:464861/1‑91 (MQ=255)
                                   aaaCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagta                                                        >  2:3055264/1‑91 (MQ=255)
                                    aaCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagtaa                                                       <  2:2536322/91‑1 (MQ=255)
                                    aaCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagtaa                                                       >  2:328505/1‑91 (MQ=255)
                                        cAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagtaag                                                      <  2:3977479/88‑1 (MQ=255)
                                        cAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAtt                                                   >  2:1315629/1‑91 (MQ=255)
                                        cAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAtt                                                   >  1:2911458/1‑91 (MQ=255)
                                         aaaaaGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAttt                                                  >  1:2702727/1‑91 (MQ=255)
                                            AAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTaaa                                               >  1:3711278‑M1/1‑91 (MQ=255)
                                            AAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTaaa                                               <  1:5294148‑M1/91‑1 (MQ=255)
                                              GCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACa                                             >  1:737475‑M1/1‑91 (MQ=255)
                                                 AACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATcc                                          >  2:5424948‑M1/1‑91 (MQ=255)
                                                 AACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATcc                                          <  1:2039021‑M1/91‑1 (MQ=255)
                                                  ACACATTCTGGGCGTATCGCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCa                                         <  1:1680343‑M1/91‑1 (MQ=255)
                                                  ACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCa                                         <  2:107461‑M1/91‑1 (MQ=255)
                                                  ACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCa                                         >  1:176324‑M1/1‑91 (MQ=255)
                                                  ACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCa                                         <  2:2090519‑M1/91‑1 (MQ=255)
                                                    ACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAAt                                       >  2:3249346‑M1/1‑91 (MQ=255)
                                                     CATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAAtt                                      <  1:3026184‑M1/91‑1 (MQ=255)
                                                      ataaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTa                                     >  1:4169072‑M2/36‑91 (MQ=255)
                                                      ATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTa                                     <  1:3866854‑M1/91‑1 (MQ=255)
                                                        tCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATg                                   <  2:4093215/91‑1 (MQ=255)
                                                        aaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATg                                   >  2:1956519‑M2/34‑91 (MQ=255)
                                                         cTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  <  2:3445509/91‑1 (MQ=255)
                                                         cTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  <  1:3525409/91‑1 (MQ=255)
                                                         cTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  <  2:1773955/91‑1 (MQ=255)
                                                         cTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  <  2:1221576/91‑1 (MQ=255)
                                                         aatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  >  2:1468417‑M2/33‑91 (MQ=255)
                                                         aatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  >  1:4359823‑M2/33‑91 (MQ=255)
                                                            ggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTa                               >  2:1058394/1‑91 (MQ=255)
                                                             gCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTAt                              >  2:2285670/1‑91 (MQ=255)
                                                              cGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATc                             <  1:691309/91‑1 (MQ=255)
                                                                tATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTa                           <  2:1948980/91‑1 (MQ=255)
                                                                tATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTa                           <  2:3211652/91‑1 (MQ=255)
                                                                tATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTa                           <  2:4343660/91‑1 (MQ=255)
                                                                 aTCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTAc                          <  1:4605224/91‑1 (MQ=255)
                                                                   ccccATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTg                        >  1:674148/1‑91 (MQ=255)
                                                                    cccATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGa                       <  2:3496562/91‑1 (MQ=255)
                                                                      cATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATg                     <  1:1000707/91‑1 (MQ=255)
                                                                      cATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATg                     <  1:5409834/91‑1 (MQ=255)
                                                                       aTTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGt                    >  1:4800713/1‑91 (MQ=255)
                                                                        tttATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGtt                   <  1:5010176/91‑1 (MQ=255)
                                                                          tATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTg                 <  1:2131763/91‑1 (MQ=255)
                                                                           atgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGc                >  2:3779245‑M2/15‑91 (MQ=255)
                                                                              tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             >  1:5121677‑M2/12‑91 (MQ=255)
                                                                              tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             >  1:1361121‑M2/12‑91 (MQ=255)
                                                                                  ggcttttATTTATATTATTACTTATCTGTAGATTAGCTTATGTAAGATTTAATCATCCAATTATGTTTATCTACTGATGTTTGCATACCta         >  1:4702963‑M2/8‑91 (MQ=255)
                                                                                  ggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCta         <  1:1824705‑M2/84‑1 (MQ=255)
                                                                                    cttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCtata       >  1:1908576‑M2/6‑91 (MQ=255)
                                                                                      tttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATaaa     <  1:4004481‑M2/88‑1 (MQ=255)
                                                                                      tttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATaaa     <  1:651434‑M2/88‑1 (MQ=255)
                                                                                        tATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACa   <  1:5442295‑M2/90‑1 (MQ=255)
                                                                                         atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  <  1:384580/91‑1 (MQ=255)
                                                                                         atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  >  2:448880/1‑91 (MQ=255)
                                                                                         atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  >  1:3246074/1‑91 (MQ=255)
                                                                                         atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  >  2:1351822/1‑91 (MQ=255)
                                                                                         |                                                                                          
TAAATTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACAT  >  USA300TCH1516_ALE/2256354‑2256533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.