New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2483085 =346 (1.200)20 (0.080) 11/136 NT 6.8% intergenic (+5/‑158) hssS/USA300HOU_RS12790 Heme sensor protein HssS/putative HTH‑type transcriptional regulator
?USA300TCH1516_ALE 2483126 = 256 (1.050)intergenic (+46/‑117) hssS/USA300HOU_RS12790 Heme sensor protein HssS/putative HTH‑type transcriptional regulator

Only 100 of 432 total aligned reads displayed.

TATGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGTTT  >  USA300TCH1516_ALE/2483036‑2483216
                                                                                             |                                                                                          
tATGTAACCACCTTTACTATTACACTGCCAAATAATTCTCTTTAATCTCTTCCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTAt                                                                                            <  1:4708957/91‑1 (MQ=255)
 tagaaattaaatgttaagtggctagaaagcgctaatcaatataaaagaTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATc                                                                                           >  1:3906475‑M1/49‑91 (MQ=255)
  tGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCt                                                                                          >  1:3305610/1‑91 (MQ=255)
  agaaattaaatgttaagtggctagaaagcgctaatcaatataaaagaTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCt                                                                                          >  1:2807111‑M1/48‑91 (MQ=255)
      accaccTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTta                                                                                      >  2:456542/1‑91 (MQ=255)
           cTTTACTATTACGCTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTg                                                                                 >  1:822514/1‑91 (MQ=255)
           cTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTg                                                                                 <  1:3088821/91‑1 (MQ=255)
           cTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTg                                                                                 <  1:4264941/91‑1 (MQ=255)
            tttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGa                                                                                <  1:141802/91‑1 (MQ=255)
            tttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGa                                                                                >  1:2111371/1‑91 (MQ=255)
            tttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGa                                                                                >  2:582174/1‑91 (MQ=255)
             ttACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGAt                                                                               <  2:904116/91‑1 (MQ=255)
               aCTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTa                                                                             <  1:1840886/91‑1 (MQ=255)
               aCTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTa                                                                             >  1:3406021/1‑91 (MQ=255)
               aCTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTa                                                                             >  2:3917076/1‑91 (MQ=255)
                cTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAg                                                                            >  1:4069215/1‑91 (MQ=255)
                 tATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgc                                                                           <  2:3139539/91‑1 (MQ=255)
                 tATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgc                                                                           <  1:1565453/91‑1 (MQ=255)
                  aTTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgcg                                                                          >  1:4372488/1‑91 (MQ=255)
                  aTTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgcg                                                                          >  1:4658151/1‑91 (MQ=255)
                  aTTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgcg                                                                          <  2:4167137/91‑1 (MQ=255)
                  aTTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgcg                                                                          <  2:671785/91‑1 (MQ=255)
                  aTTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAgcg                                                                          <  1:1884394/91‑1 (MQ=255)
                    tACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCt                                                                        >  1:2913028/1‑91 (MQ=255)
                     acacTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCtt                                                                       <  1:2490/91‑1 (MQ=255)
                       acTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTc                                                                     <  2:5006230/91‑1 (MQ=255)
                        cTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCt                                                                    <  2:1874429/91‑1 (MQ=255)
                        cTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCt                                                                    <  1:5641807/91‑1 (MQ=255)
                        cTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCt                                                                    >  1:5374735/1‑91 (MQ=255)
                         tGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTa                                                                   >  2:2823079/1‑91 (MQ=255)
                         tGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTa                                                                   <  1:1228212/91‑1 (MQ=255)
                          gCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAg                                                                  <  2:1539525/91‑1 (MQ=255)
                           ccAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGc                                                                 <  1:2745952/91‑1 (MQ=255)
                            cAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGcc                                                                >  2:859406/1‑91 (MQ=255)
                            cAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGcc                                                                >  1:4835753/1‑91 (MQ=255)
                              aataatTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCAc                                                              >  2:1262409/1‑91 (MQ=255)
                               gctaatcaatataaaagaTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACt                                                             >  1:2626167‑M1/19‑91 (MQ=255)
                               ataatTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACt                                                             >  2:2185504/1‑91 (MQ=255)
                                taatTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACtt                                                            <  2:1170583/91‑1 (MQ=255)
                                taatTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACtt                                                            <  1:4572437/91‑1 (MQ=255)
                                  atTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTaa                                                          <  2:1919555/91‑1 (MQ=255)
                                  atTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTaa                                                          >  2:4285137/1‑91 (MQ=255)
                                  atTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTaa                                                          >  1:3153215/1‑91 (MQ=255)
                                   ttCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAAc                                                         <  2:1073298/91‑1 (MQ=255)
                                    tCACTTTAATCTCTACCTCCTGAAA‑‑‑TAACATTTCTGTTTTTATTTCAGGCGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACa                                                        <  2:5231847/91‑1 (MQ=255)
                                    tCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACa                                                        <  2:345160/91‑1 (MQ=255)
                                    tCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACa                                                        >  2:4971212/1‑91 (MQ=255)
                                    tCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACa                                                        >  2:4509553/1‑91 (MQ=255)
                                    tCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATATCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACa                                                        >  1:4759861/1‑91 (MQ=255)
                                     cACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACAt                                                       <  1:1737319/91‑1 (MQ=255)
                                      aatataaaagaTACCTCCTGAAATAAAAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAAc                                                         >  1:4422332‑M1/12‑91 (MQ=255)
                                      aCTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTTTATTTTTTTCACGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACAtt                                                      >  2:5448256/1‑91 (MQ=255)
                                      aCTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACAtt                                                      >  1:886125/1‑91 (MQ=255)
                                      aCTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACAtt                                                      >  1:3578692/1‑91 (MQ=255)
                                            aTCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAAttt                                                >  1:221329/1‑91 (MQ=255)
                                            aTCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAAttt                                                <  1:1087194/91‑1 (MQ=255)
                                            aTCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAAttt                                                <  1:4965857/91‑1 (MQ=255)
                                            aTCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATATAAttt                                                >  2:5163252/1‑91 (MQ=255)
                                             tctcTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTc                                               >  2:330533/1‑91 (MQ=255)
                                              ctctACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCt                                              <  1:1344386/91‑1 (MQ=255)
                                                ctACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTAc                                            <  2:3578692/91‑1 (MQ=255)
                                                aagatacctcctgaaataaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTc                                               >  2:2838136‑M2/46‑91 (MQ=255)
                                                 TACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGTTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTAcc                                           <  2:1214798‑M1/91‑1 (MQ=255)
                                                 TACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTAcc                                           <  1:2877610‑M1/91‑1 (MQ=255)
                                                 TACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTAcc                                           <  2:5056930‑M1/91‑1 (MQ=255)
                                                   CCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCAt                                         >  1:1018867‑M1/1‑91 (MQ=255)
                                                    CTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCAtt                                        <  1:3806406‑M1/91‑1 (MQ=255)
                                                     TCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTc                                       >  1:5543536‑M1/1‑91 (MQ=255)
                                                      CCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTca                                      >  1:3634964‑M1/1‑91 (MQ=255)
                                                        TGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaac                                    >  2:1637940‑M1/1‑91 (MQ=255)
                                                         GAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaaca                                   <  1:5012930‑M1/91‑1 (MQ=255)
                                                         GAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaaca                                   >  2:402538‑M1/1‑91 (MQ=255)
                                                          AAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTcaacaa                                  <  2:5513233‑M1/91‑1 (MQ=255)
                                                                taaaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAt                               >  2:5597969‑M2/30‑91 (MQ=255)
                                                                  aaaacagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAttt                             >  2:3779532‑M2/28‑91 (MQ=255)
                                                                  aCATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAAttt                             <  2:4054357/91‑1 (MQ=255)
                                                                   cATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTa                            >  2:4785324/1‑91 (MQ=255)
                                                                     tttCTGTTTTTATTTCAGGAGGTATCTTTTATCTTGAGTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTaaa                          <  2:2356615/91‑1 (MQ=255)
                                                                     tttCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTaaa                          <  2:3745852/91‑1 (MQ=255)
                                                                     tttCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTaaa                          <  1:596106/91‑1 (MQ=255)
                                                                     tttCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTaaa                          <  1:5393056/91‑1 (MQ=255)
                                                                     acagaaatgttttttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTaaa                          >  2:3214080‑M2/25‑91 (MQ=255)
                                                                      ttCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAat                         >  1:5114910/1‑91 (MQ=255)
                                                                           tttttATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATc                    <  2:1730155/91‑1 (MQ=255)
                                                                             tttATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGa                  >  2:2653858/1‑91 (MQ=255)
                                                                                aTTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATgg               <  1:3205979/91‑1 (MQ=255)
                                                                                aTTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATgg               <  2:4652513/91‑1 (MQ=255)
                                                                                 tttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTGACATTTAATTTCTTCCATTCAACAAAATTTAAATATATCGATGGt              <  1:3054072‑M2/79‑1 (MQ=255)
                                                                                 tttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGt              <  2:1454907‑M2/79‑1 (MQ=255)
                                                                                  ttcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTc             <  1:5448256‑M2/80‑1 (MQ=255)
                                                                                   tcaggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCa            <  2:2991350‑M2/81‑1 (MQ=255)
                                                                                    caggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCAt           >  1:5212089‑M2/10‑91 (MQ=255)
                                                                                     aggaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCAtt          >  2:2453911‑M2/9‑91 (MQ=255)
                                                                                       gaggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTa        <  1:3779886‑M2/85‑1 (MQ=255)
                                                                                         ggtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATg      >  2:4399734‑M2/5‑91 (MQ=255)
                                                                                          gtaTCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATgg     >  2:1393080‑M2/4‑91 (MQ=255)
                                                                                            aTCTTTTATATTTATTAGCGGTTTCTAGACACTTGTCATTTAATTTCTACCATTCATCAAAATTTCAATATATCGATGGTCATTTATgggt   <  2:4718793/91‑3 (MQ=255)
                                                                                             tCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGttt  >  2:4820652/1‑91 (MQ=255)
                                                                                             tCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGttt  >  2:2053445/1‑91 (MQ=255)
                                                                                             tCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGttt  <  2:2011820/91‑1 (MQ=255)
                                                                                             |                                                                                          
TATGTAACCACCTTTACTATTACACTGCCAAATAATTCACTTTAATCTCTACCTCCTGAAA‑‑‑AAACATTTCTGTTTTTATTTCAGGAGGTATCTTTTATATTGATTAGCGCTTTCTAGCCACTTAACATTTAATTTCTACCATTCAACAAAATTTAAATATATCGATGGTCATTTATGGTTT  >  USA300TCH1516_ALE/2483036‑2483216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.