New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2492466 =299 (1.040)17 (0.070) 10/138 NT 6.5% intergenic (+9/+37) yhfP/rimI_4 Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase
?USA300TCH1516_ALE 2492499 = 233 (0.940)intergenic (+42/+4) yhfP/rimI_4 Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase

Only 100 of 370 total aligned reads displayed.

ACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTG  >  USA300TCH1516_ALE/2492409‑2492588
                                                                                          |                                                                                         
 cATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTa                                                                                          >  2:187873/1‑91 (MQ=255)
   tGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAt                                                                                        <  2:432044/91‑1 (MQ=255)
   tGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAt                                                                                        <  1:4939376/91‑1 (MQ=255)
   tGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAt                                                                                        >  2:3379825/1‑91 (MQ=255)
   tGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAt                                                                                        <  1:774458/91‑1 (MQ=255)
    gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAtt                                                                                       <  1:3449472/91‑1 (MQ=255)
    gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAtt                                                                                       <  2:3183606/91‑1 (MQ=255)
    gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAtt                                                                                       <  1:2038138/91‑1 (MQ=255)
     aaaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAttt                                                                                      >  2:4445254/1‑91 (MQ=255)
     aaaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAttt                                                                                      <  1:3945429/91‑1 (MQ=255)
       aaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAg                                                                                    <  2:1795859/91‑1 (MQ=255)
       aaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAg                                                                                    >  1:3110483/1‑91 (MQ=255)
        aTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGt                                                                                   <  2:213426/91‑1 (MQ=255)
        aTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGt                                                                                   <  1:710757/91‑1 (MQ=255)
        aTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGt                                                                                   <  2:3137664/91‑1 (MQ=255)
         tAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTa                                                                                  <  1:1700689/91‑1 (MQ=255)
           aaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAtt                                                                                <  2:4253397/91‑1 (MQ=255)
            aGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAttt                                                                               <  2:4864058/91‑1 (MQ=255)
             gggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTg                                                                              >  1:5375194/1‑91 (MQ=255)
              ggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGa                                                                             >  2:5077848/1‑91 (MQ=255)
              ggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGa                                                                             <  2:2048230/91‑1 (MQ=255)
                  cATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAtata                                                                         >  1:3383301/1‑91 (MQ=255)
                   aTTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATatac                                                                        <  1:1904488/91‑1 (MQ=255)
                    ttGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATataca                                                                       >  2:3731607/1‑91 (MQ=255)
                    ttGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATataca                                                                       <  2:1153153/91‑1 (MQ=255)
                     cagattcaggcggtatgtatatcaaatactaaattaaaaaagacatcccgttatgcgagatgtctttttTAATTTAGTATTTGATatacat                                                                      <  1:283412‑M2/22‑1 (MQ=255)
                        tATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATAcc                                                                   <  1:1985700/91‑1 (MQ=255)
                        tATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATAcc                                                                   >  2:73391/1‑91 (MQ=255)
                           cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGcc                                                                >  1:5218208/1‑91 (MQ=255)
                           cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGcc                                                                >  2:2431598/1‑91 (MQ=255)
                            gATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCt                                                               <  1:5058681/91‑1 (MQ=255)
                             aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTg                                                              <  1:3599300/91‑1 (MQ=255)
                             aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTg                                                              <  1:85868/91‑1 (MQ=255)
                             aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTg                                                              <  2:3258801/91‑1 (MQ=255)
                             aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTg                                                              <  2:4179267/91‑1 (MQ=255)
                              tttCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGa                                                             >  2:302336/1‑91 (MQ=255)
                               ttCGGTCTAGATAAATAGCATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGaa                                                            <  1:4725540/91‑1 (MQ=255)
                                tCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAAt                                                           <  1:2907396/91‑1 (MQ=255)
                                 cGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATc                                                          <  2:1684956/91‑1 (MQ=255)
                                  ggTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCt                                                         <  2:1033941/91‑1 (MQ=255)
                                  ggTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCt                                                         <  1:2642098/91‑1 (MQ=255)
                                  ggTGTAGATAAATAGTATTCATGAAAAACACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCt                                                         >  2:5406892/1‑91 (MQ=255)
                                   gtgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg                                                        <  2:3588439/91‑1 (MQ=255)
                                    tgtAGATAAATGGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTgg                                                       <  2:5649386/91‑1 (MQ=255)
                                    tgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTgg                                                       <  1:1130711/91‑1 (MQ=255)
                                     gtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGt                                                      <  2:1000752/91‑1 (MQ=255)
                                      tAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGtt                                                     >  2:3062297/1‑91 (MQ=255)
                                       aGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTc                                                    <  1:3278939/91‑1 (MQ=255)
                                             aTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggtagg                                              <  1:4511991/91‑1 (MQ=255)
                                             aTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggtagg                                              >  1:1757620/1‑91 (MQ=255)
                                                 tATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGtata                                          >  2:348064/1‑91 (MQ=255)
                                                  aTTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATaa                                         >  2:4640387/1‑91 (MQ=255)
                                                  aTTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATaa                                         >  1:1561768/1‑91 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       <  1:1034910/91‑1 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       >  1:1438479/1‑91 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       <  1:3725153/91‑1 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       <  1:1634485/91‑1 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       >  1:462477/1‑91 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       <  1:2103501/91‑1 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       <  2:4925220/91‑1 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       <  2:476283/91‑1 (MQ=255)
                                                    tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                       <  1:446/91‑1 (MQ=255)
                                                     cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                      >  2:900397/1‑91 (MQ=255)
                                                     cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                      <  1:5025815/91‑1 (MQ=255)
                                                     cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                      <  1:108298/91‑1 (MQ=255)
                                                     cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                      >  1:5590768/1‑91 (MQ=255)
                                                      aTGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                                     <  2:1910427/91‑1 (MQ=255)
                                                      aTGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAAACTGGTTCGGTAGGTATAAATcc                                     <  2:1247960/91‑1 (MQ=255)
                                                       tGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCa                                    >  2:2305216/1‑91 (MQ=255)
                                                       tGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCa                                    >  1:2430668/1‑91 (MQ=255)
                                                       tGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCa                                    >  1:5088285/1‑91 (MQ=255)
                                                       tGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCa                                    <  2:345292/91‑1 (MQ=255)
                                                       tGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCa                                    >  2:649457/1‑91 (MQ=255)
                                                          AAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAt                                 <  1:5463121‑M1/91‑1 (MQ=255)
                                                           AAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtt                                <  2:4971257‑M1/91‑1 (MQ=255)
                                                            AAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                               <  2:25568‑M1/91‑1 (MQ=255)
                                                            AAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                               >  2:4603758‑M1/1‑91 (MQ=255)
                                                             AGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtttt                              >  1:2323565‑M1/1‑91 (MQ=255)
                                                                gATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGta                           >  2:5194792‑M1/2‑91 (MQ=255)
                                                                CATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGta                           >  1:643486‑M1/1‑91 (MQ=255)
                                                                CATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGta                           <  2:596493‑M1/91‑1 (MQ=255)
                                                                 ATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtat                          <  1:3772916‑M1/91‑1 (MQ=255)
                                                                 ATCCCGTTATGCGAGAGGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCTGTAGGTATAAATCCAAATTTTGtat                          >  2:5369427‑M1/1‑91 (MQ=255)
                                                                  tctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtata                         >  1:4056526‑M2/25‑91 (MQ=255)
                                                                  TCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtata                         <  2:2256257‑M1/91‑1 (MQ=255)
                                                                   ctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTtagtaggt                        >  1:4737676‑M2/24‑88 (MQ=255)
                                                                    ccGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtatata                       >  2:1484710/1‑91 (MQ=255)
                                                                      gcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAt                     >  1:3238107‑M2/21‑91 (MQ=255)
                                                                      gTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAt                     <  2:2204985/91‑1 (MQ=255)
                                                                        tATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt                   <  2:3977684/91‑1 (MQ=255)
                                                                         aTGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTa                  <  1:1206720/91‑1 (MQ=255)
                                                                                  gtctttttTATTTTATTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTggg         >  2:3847057‑M2/9‑91 (MQ=255)
                                                                                   tctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGt        >  1:2236029‑M2/8‑91 (MQ=255)
                                                                                     tttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAg      >  1:2701950‑M2/6‑91 (MQ=255)
                                                                                     tttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAg      <  2:292732‑M2/86‑1 (MQ=255)
                                                                                      ttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGATGGGTAGt     >  2:2680616‑M2/5‑91 (MQ=255)
                                                                                       tttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATATATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTc    <  1:4310982‑M2/88‑1 (MQ=255)
                                                                                        ttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCt   <  2:4091937‑M2/89‑1 (MQ=255)
                                                                                        ttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCt   <  1:1280438‑M2/89‑1 (MQ=255)
                                                                                         tTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTg  <  1:2446325‑M2/90‑1 (MQ=255)
                                                                                          |                                                                                         
ACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTG  >  USA300TCH1516_ALE/2492409‑2492588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.