New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2541819263 (0.920)15 (0.060) 10/136 NT 5.6% intergenic (+78/‑422) sbi/hlgA Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A
?USA300TCH1516_ALE = 2541837 280 (1.150)intergenic (+96/‑404) sbi/hlgA Immunoglobulin‑binding protein sbi/Gamma‑hemolysin component A

Only 100 of 395 total aligned reads displayed.

CAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAC  >  USA300TCH1516_ALE/2541747‑2541927
                                                                                          |                                                                                          
caaAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCt                                                                                            <  1:1159573/91‑1 (MQ=255)
   aaaTATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacg                                                                                         <  2:2627797‑M2/91‑4 (MQ=255)
   aaaTATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacg                                                                                         >  1:4582987‑M2/1‑88 (MQ=255)
   aaaTATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacg                                                                                         <  1:3786428‑M2/91‑4 (MQ=255)
    aaTATCTACTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacgg                                                                                        >  1:4474851‑M2/1‑87 (MQ=255)
      tatCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggtt                                                                                      <  1:2454363‑M2/91‑7 (MQ=255)
       atCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttc                                                                                     <  2:918891‑M2/91‑8 (MQ=255)
       atCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttc                                                                                     >  2:1417730‑M2/1‑84 (MQ=255)
        tcttctCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttct                                                                                    <  1:4868444‑M2/91‑9 (MQ=255)
         cttctCTAGTTTTACGTCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctt                                                                                   >  2:4353906‑M2/1‑82 (MQ=255)
         cttctCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctt                                                                                   <  1:761526‑M2/91‑10 (MQ=255)
           tctcTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGGACCGTTGATTCTCAATCGAATCTacggttctttt                                                                                 <  1:1066546‑M2/91‑12 (MQ=255)
           tctcTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctttt                                                                                 <  1:5320339‑M2/91‑12 (MQ=255)
           tctcTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctttt                                                                                 >  1:2935644‑M2/1‑80 (MQ=255)
            ctctAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttcttttt                                                                                <  1:3173728‑M2/91‑13 (MQ=255)
            ctctAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttcttttt                                                                                >  2:3451396‑M2/1‑79 (MQ=255)
                aGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAt                                                                            <  2:203136/91‑1 (MQ=255)
                   tttACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCAtttt                                                                         <  1:1777411/91‑1 (MQ=255)
                      aCATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCa                                                                      >  2:1339547/1‑91 (MQ=255)
                      aCATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCa                                                                      >  1:4192627/1‑91 (MQ=255)
                       catcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCAt                                                                     >  2:3154178/1‑91 (MQ=255)
                       catcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCAt                                                                     >  1:2486722/1‑91 (MQ=255)
                       catcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCAt                                                                     <  2:2402848/91‑1 (MQ=255)
                       catcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCAt                                                                     >  1:3880365/1‑91 (MQ=255)
                        atcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATc                                                                    <  1:3459355/91‑1 (MQ=255)
                         tcatTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCa                                                                   <  2:3532280/91‑1 (MQ=255)
                          catTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCaa                                                                  >  1:2804169/1‑91 (MQ=255)
                           atTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAAt                                                                 <  1:2686388/91‑1 (MQ=255)
                           atTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAAt                                                                 <  1:3677432/91‑1 (MQ=255)
                                  aaaTAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGc                                                          <  1:5097587/91‑1 (MQ=255)
                                   aataatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGct                                                         <  2:2112733/91‑1 (MQ=255)
                                    ataatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGctt                                                        >  2:85212/1‑91 (MQ=255)
                                     taatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGcttc                                                       >  2:2915059/1‑91 (MQ=255)
                                      aatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGcttct                                                      <  2:600873/91‑1 (MQ=255)
                                      aatTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGcttct                                                      <  1:8397/91‑1 (MQ=255)
                                         tttCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCg                                                   <  2:534439/91‑1 (MQ=255)
                                          ttCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGc                                                  <  2:1750301/91‑1 (MQ=255)
                                          ttCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGc                                                  <  1:1474182/91‑1 (MQ=255)
                                           tCGTAACAATCCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCt                                                 <  1:2630773/91‑1 (MQ=255)
                                           tCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCt                                                 <  1:1036781/91‑1 (MQ=255)
                                           tCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCt                                                 <  2:297170/91‑1 (MQ=255)
                                             gTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAt                                               >  2:4784735/1‑91 (MQ=255)
                                              tAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAtt                                              >  1:3406520/1‑91 (MQ=255)
                                              tAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAtt                                              >  1:539764/1‑91 (MQ=255)
                                              tAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAtt                                              >  1:4090934/1‑91 (MQ=255)
                                              tAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAtt                                              <  2:4133245/91‑1 (MQ=255)
                                               aaCAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAttt                                             <  2:3863711/91‑1 (MQ=255)
                                               aaCAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTAttt                                             >  2:5148768/1‑91 (MQ=255)
                                                aCAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTg                                            >  1:1654619/1‑91 (MQ=255)
                                                  aaaCCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTc                                          <  1:2388002/91‑1 (MQ=255)
                                                   aaCCGTGATTAAAAAGAACCGTTGAATCTCAATCGAATCTACGGTTCTTATTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCa                                         <  2:5231165/91‑1 (MQ=255)
                                                       gTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTacggttctttttaatcaaggtttgttacgaaaattatttaaaaaatgatgtaaaa                                     <  2:2333510‑M2/91‑56 (MQ=255)
                                                       gTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGccc                                     <  1:2928213/91‑1 (MQ=255)
                                                       gTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGccc                                     >  1:1347758/1‑91 (MQ=255)
                                                        tGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa                                    <  2:4015760/91‑1 (MQ=255)
                                                        tGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCa                                    <  1:4820343/91‑1 (MQ=255)
                                                          aTTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACt                                  >  1:4007986/1‑91 (MQ=255)
                                                          aTTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACt                                  <  2:1840164/91‑1 (MQ=255)
                                                          aTTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATCAAATGCTTCTTCGCTATTTGTCAGCCCACt                                  >  1:4346189/1‑91 (MQ=255)
                                                            tAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttt                                <  1:5195471/91‑1 (MQ=255)
                                                            tAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttt                                <  1:1722644/91‑1 (MQ=255)
                                                            tAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttt                                <  2:4242592/91‑1 (MQ=255)
                                                            tAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACttt                                <  1:631931/91‑1 (MQ=255)
                                                               aaaGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACtttttt                             >  1:4558909/1‑91 (MQ=255)
                                                               aaaGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACtttttt                             <  1:182207/91‑1 (MQ=255)
                                                               aaaGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACtttttt                             <  1:4042703/91‑1 (MQ=255)
                                                                 aGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTAc                           >  1:2042073/1‑91 (MQ=255)
                                                                  gAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTAcc                          <  2:3959317/91‑1 (MQ=255)
                                                                   aaCCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCt                         <  2:1632603/91‑1 (MQ=255)
                                                                   aaCCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCt                         >  2:3925112/1‑91 (MQ=255)
                                                                   aaCCGCTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCACCCCACTTTTTTACCt                         >  2:5532312/1‑91 (MQ=255)
                                                                     ccGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGc                       >  2:564640/1‑91 (MQ=255)
                                                                      cGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCa                      <  2:494741/91‑1 (MQ=255)
                                                                      cGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCa                      <  1:2761763/91‑1 (MQ=255)
                                                                      cGTTGATTCTCAAACGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCa                      <  2:219334/91‑1 (MQ=255)
                                                                       gTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCaa                     <  1:1194562/91‑1 (MQ=255)
                                                                       gTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCaa                     >  2:3336501/1‑91 (MQ=255)
                                                                        ttGATTCTCAATCGAATCTACGGTTCTTTTTTCTTTTTTCATCAATTAAATGCTTCTTCGCTCTTTGTCATCCCACTTTTTTACCTGCAAc                    >  2:5037606/1‑91 (MQ=255)
                                                                        ttGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAAc                    <  2:1156388/91‑1 (MQ=255)
                                                                          gATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACtt                  >  1:2260749/1‑91 (MQ=255)
                                                                           aTTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTg                 <  1:946897/91‑1 (MQ=255)
                                                                              ctcAATCGAATCTacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaagatatttttgattga              <  1:2165017‑M2/91‑79 (MQ=255)
                                                                               tcAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTaa             <  2:80259/91‑1 (MQ=255)
                                                                                cAATCGAATCTacggttctttttaatcacggtttgttacgaaaattatttaaaaaatgatgtaaaactagagaagatatttttgattgatt            <  1:801104‑M2/91‑81 (MQ=255)
                                                                                cAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTaaa            <  2:3050447/91‑1 (MQ=255)
                                                                                cAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTaaa            <  2:4575268/91‑1 (MQ=255)
                                                                                 aaTCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAaat           >  1:1570980/1‑91 (MQ=255)
                                                                                 aaTCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAaat           >  1:5015380/1‑91 (MQ=255)
                                                                                    cGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAaataat        >  2:3279964/1‑91 (MQ=255)
                                                                                    cGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTGTTTACCTGCAACTTGTTAaataat        <  1:5452942/91‑1 (MQ=255)
                                                                                     gAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATc       >  1:2205945/1‑91 (MQ=255)
                                                                                      aaTCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATcc      >  1:3529333/1‑91 (MQ=255)
                                                                                      aaTCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATcc      <  1:2313759/91‑1 (MQ=255)
                                                                                       aTCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCt     >  1:479134/1‑91 (MQ=255)
                                                                                        tCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCtt    >  1:127938/1‑91 (MQ=255)
                                                                                         cTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTa   <  2:1235407/91‑1 (MQ=255)
                                                                                         cTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTa   <  1:2983047/91‑1 (MQ=255)
                                                                                         cTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTa   >  2:3649600/1‑91 (MQ=255)
                                                                                          tACGGTTCTTTTTTCATTTTTCTTCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc  >  2:4655071/1‑91 (MQ=255)
                                                                                          tACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAc  <  2:2744458/91‑1 (MQ=255)
                                                                                          |                                                                                          
CAAAAATATCTTCTCTAGTTTTACATCATTTTTTAAATAATTTTCGTAACAAACCGTGATTAAAAAGAACCGTTGATTCTCAATCGAATCTACGGTTCTTTTTTCATTTTCCATCAATTAAATGCTTCTTCGCTATTTGTCAGCCCACTTTTTTACCTGCAACTTGTTAAATAATCCTTAC  >  USA300TCH1516_ALE/2541747‑2541927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.