New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 12916	NA (NA)	23 (0.020)	17/148	NT	NA	coding (410/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase
	?	CP000731	= 12919	NA (NA)					coding (413/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase

CCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAACCTCA  >  CP000731/12912‑13002        |                                                                                    ccgtCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAACCTCa  <  2:4744155/88‑1 (MQ=1)        |                                                                                    CCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAATATCTGAATAACCTCA  >  CP000731/12912‑13002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.