| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 9,719 | G→A | 5.8% | intergenic (+24/+63) | gyrA → / ← nnrD | DNA gyrase subunit A/ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 9,719 | 0 | G | A | 5.8% | 1117.7 / 39.5 | 330 | intergenic (+24/+63) | gyrA/nnrD | DNA gyrase subunit A/ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (137/174); new base A (9/10); total (146/184) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01 | |||||||||||
Only 100 of 337 total aligned reads displayed.
TGAAGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGTAA > USA300TCH1516_ALE/9629‑9809 | aaGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTa > 2:2229695/1‑91 (MQ=255) aGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAg > 2:2701804/1‑91 (MQ=255) aGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAg > 1:4844735/1‑91 (MQ=39) tAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAggg < 2:4828657/91‑1 (MQ=38) aaGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAgggg < 2:2898700/91‑1 (MQ=255) aGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGa > 1:2958352/1‑91 (MQ=255) gACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAg < 1:3504465/91‑1 (MQ=255) gACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAg > 2:4652155/1‑91 (MQ=255) aCAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGt < 2:83449/91‑1 (MQ=255) aaGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCt < 2:4400918/91‑1 (MQ=255) aaGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCt > 2:2963666/1‑91 (MQ=255) aaGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCt > 2:5538691/1‑91 (MQ=255) aaGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCt > 2:2188141/1‑91 (MQ=255) aaGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAGGGAAGTCt < 1:2546422/91‑1 (MQ=37) gATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTa < 2:369650/91‑1 (MQ=255) gATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTa < 1:5373402/91‑1 (MQ=255) gATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTa > 2:4170320/1‑91 (MQ=255) gATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTa < 1:1771189/91‑1 (MQ=255) ttCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑ttt > 1:2357688/1‑91 (MQ=255) tCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑tttt > 1:4418414/1‑91 (MQ=255) tGGATCGTGTTGAAGAAAATATACAACAATCATCAGATGAAGAATAATAAAAAATATGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTAt < 2:3358558/91‑1 (MQ=255) gATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGc > 2:577954/1‑91 (MQ=255) gtgtTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGa > 2:1282039/1‑91 (MQ=255) tgtTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGaa < 1:4754587/91‑1 (MQ=255) gtTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGaaa > 2:520675/1‑91 (MQ=255) attGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGaaa < 1:5227154/90‑1 (MQ=255) gaagaaGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTa > 1:3341447/1‑91 (MQ=255) gaagaaGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTa > 1:759948/1‑91 (MQ=255) aagaagATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTaa > 1:3975689/1‑91 (MQ=255) aagaagATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTaa < 2:1788709/91‑1 (MQ=255) aagaagATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTaa > 1:1922336/1‑91 (MQ=255) agaTATACAACAATCATCAGATGAAGAAGAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTGTTATGCTAGAAAGTAATGCt < 2:1665374/91‑1 (MQ=255) gaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCtt < 1:3268553/91‑1 (MQ=255) gaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCtt < 2:5326654/91‑1 (MQ=255) gaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCtt < 1:2795274/91‑1 (MQ=255) atatACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCttt > 2:2497771/1‑91 (MQ=255) ataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTAc < 1:3837004/91‑1 (MQ=255) ataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTAc < 2:1438650/91‑1 (MQ=255) ataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTAc < 1:3414332/91‑1 (MQ=255) ataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTAc < 1:5147085/91‑1 (MQ=255) ataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTGCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTAc > 1:253734/1‑91 (MQ=255) taCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACt < 2:3287275/91‑1 (MQ=255) acaacaATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACta < 2:394123/91‑1 (MQ=255) caacaaTCATCAGCTGAAGAATAATAAAAACTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtat > 1:2334241/1‑91 (MQ=255) caacaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtat > 1:3785610/1‑91 (MQ=255) caacaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtat > 2:2013562/1‑91 (MQ=255) aactaTCATCAGATGAAGAAGAATAAAAAATCAGACTTCTCTCTTTGTGGGGGAGTGTTA‑TTTTTATGCTATAAAGTAATGCTTTACcata < 2:4708310/91‑1 (MQ=255) aacaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtata > 1:1388137/1‑91 (MQ=255) aacaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtata < 1:5335143/91‑1 (MQ=255) acaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTATTatat < 2:1151171/91‑1 (MQ=255) acaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTatat < 2:3249413/91‑1 (MQ=255) caaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATAtt < 2:3106881/91‑1 (MQ=255) caaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATAtt > 2:2685039/1‑91 (MQ=255) caaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATAtt > 1:1617039/1‑91 (MQ=255) caaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTGTACTATAtt < 2:2536186/91‑1 (MQ=255) aaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTc > 1:3763897/1‑91 (MQ=255) tcatcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCaa > 2:5260861/1‑91 (MQ=255) catcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAAt < 2:4504536/91‑1 (MQ=255) atcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATg > 1:5541624/1‑91 (MQ=255) tcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGa > 1:4790719/1‑91 (MQ=255) tcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGa > 2:1007542/1‑91 (MQ=255) caGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGAt > 1:2006413/1‑91 (MQ=255) caGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGAt > 1:3451529/1‑91 (MQ=255) caGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGAt < 2:3874051/91‑1 (MQ=255) gATTAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTa < 2:1590121/91‑1 (MQ=255) tGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGt < 1:1368808/91‑1 (MQ=255) aagaaTAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTTGAAAGTAATGCTTTACTATATTCAATGATTAGTaa < 1:4002748/91‑1 (MQ=255) agaaTAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAAt > 2:2383072/1‑91 (MQ=255) gaaTAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTGTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATg < 1:5129316/91‑1 (MQ=255) gaaTAATAAAAAATAAGACTTCCCTATATGTAGGGGAGGCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATg < 1:4705381/91‑1 (MQ=255) aataatAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGa < 2:2066000/91‑1 (MQ=255) ataataAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGAc < 2:428212/91‑1 (MQ=255) ataataAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTCTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGAc > 1:712293/1‑91 (MQ=255) taataaAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACt < 1:4445333/91‑1 (MQ=255) taataaAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACt > 1:5055662/1‑91 (MQ=255) taaAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAAc > 1:266700/1‑91 (MQ=255) aaaaaaTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACt < 2:5085008/91‑1 (MQ=255) aaaaTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACttt > 2:1110490/1‑91 (MQ=255) aaaaTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACttt > 2:802089/1‑91 (MQ=255) aaaTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTc < 2:4890767/91‑1 (MQ=255) aTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTa < 1:1872329/91‑1 (MQ=255) aTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTa > 1:2503112/1‑91 (MQ=255) tAAGACTCCCCTACATATAGGGAAGTCTTATTTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTa > 2:1233227/1‑91 (MQ=21) aGACTTCCCTATATGTAGGGGAGTGTTA‑ATTTTATGCTAGACAGTAATGCTTTAATATATTCAATGATTAGTAATGTCTAACTTTCTAAtt > 2:4113734/1‑91 (MQ=255) aGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAtt > 1:1005720/1‑91 (MQ=255) aGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAtt > 1:4562788/1‑91 (MQ=255) aGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAtt > 2:4993594/1‑91 (MQ=255) aGACTTCCCTATATGTAGGGGAGTCTTA‑TGTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAtt < 2:4353178/91‑1 (MQ=255) aGACTCCCCTACATATAGGGAAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAtt > 2:1057008/1‑91 (MQ=37) cTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGtt < 1:2638068/91‑1 (MQ=255) cccTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCa < 1:60630/91‑1 (MQ=255) ccTATATGTAGGGGAGTCTTA‑TGTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCAt < 2:1462886/91‑1 (MQ=255) cTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGAGTAGTAATGACTAACTTTCTAATTGTTTCAtt < 2:67227/91‑1 (MQ=255) atatGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTATACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGc > 1:5592355/1‑91 (MQ=255) tatGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCg < 2:1905893/91‑1 (MQ=255) atGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGt > 1:3579288/1‑91 (MQ=255) gTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTCACTTTCTAATTGTTTCATTGCGTaa < 2:4740381/91‑1 (MQ=255) gTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGTaa < 1:3107595/91‑1 (MQ=255) gTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGTaa < 1:4293247/91‑1 (MQ=255) gTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGTaa < 1:1479600/91‑1 (MQ=255) | TGAAGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGTAA > USA300TCH1516_ALE/9629‑9809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |