mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 168 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2863074 | 269 (0.940) | 10 (0.040) | 7/150 | NT | 3.8% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2854319 | 334 (1.160) | 10 (0.040) | 9/150 | NT | 2.9% | intergenic (+17/+396) | yflS/USA300HOU_RS14625 | Putative malate transporter YflS/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2854338 | 359 (1.330) | intergenic (+36/+377) | yflS/USA300HOU_RS14625 | Putative malate transporter YflS/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2850817 = | 282 (0.980) | 8 (0.030) | 7/132 | NT | 3.6% | intergenic (+16/+103) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2850866 = | 195 (0.820) | intergenic (+65/+54) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2833267 = | 301 (1.050) | 6 (0.020) | 5/148 | NT | 2.1% | intergenic (‑603/+487) | lipA_2/hisI | Lipase 1/Phosphoribosyl‑AMP cyclohydrolase |
| ? | USA300TCH1516_ALE | 2833307 = | 282 (1.060) | intergenic (‑643/+447) | lipA_2/hisI | Lipase 1/Phosphoribosyl‑AMP cyclohydrolase | |||||
| * | ? | USA300TCH1516_ALE | 2830190 = | 315 (1.100) | 5 (0.020) | 4/138 | NT | 2.1% | intergenic (+18/+429) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 |
| ? | USA300TCH1516_ALE | 2830247 = | 200 (0.810) | intergenic (+75/+372) | icaC/lipA_2 | putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1 | |||||
| * | ? | USA300TCH1516_ALE | = 2751374 | 312 (1.090) | 11 (0.040) | 9/146 | NT | 3.7% | intergenic (‑222/+39) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase |
| ? | USA300TCH1516_ALE | = 2751393 | 285 (1.090) | intergenic (‑241/+20) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase | |||||
| * | ? | USA300TCH1516_ALE | 2746384 = | 272 (0.950) | 11 (0.040) | 8/140 | NT | 4.8% | intergenic (‑632/+53) | mqo2/acsA_2 | putative malate:quinone oxidoreductase 2/Acetyl‑coenzyme A synthetase |
| ? | USA300TCH1516_ALE | 2746429 = | 200 (0.800) | intergenic (‑677/+8) | mqo2/acsA_2 | putative malate:quinone oxidoreductase 2/Acetyl‑coenzyme A synthetase | |||||
| * | ? | USA300TCH1516_ALE | 2740966 = | 384 (1.340) | 11 (0.050) | 10/132 | NT | 4.1% | intergenic (+8/+73) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase |
| ? | USA300TCH1516_ALE | 2741016 = | 201 (0.850) | intergenic (+58/+23) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase | |||||
| * | ? | USA300TCH1516_ALE | = 2733760 | 268 (0.930) | 12 (0.050) | 9/146 | NT | 4.6% | intergenic (+73/+56) | cocE/panD | Cocaine esterase/Aspartate 1‑decarboxylase |
| ? | USA300TCH1516_ALE | = 2733780 | 259 (0.990) | intergenic (+93/+36) | cocE/panD | Cocaine esterase/Aspartate 1‑decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 2733754 = | 244 (0.850) | 7 (0.030) | 7/146 | NT | 2.8% | intergenic (+67/+62) | cocE/panD | Cocaine esterase/Aspartate 1‑decarboxylase |
| ? | USA300TCH1516_ALE | 2733788 = | 259 (0.990) | intergenic (+101/+28) | cocE/panD | Cocaine esterase/Aspartate 1‑decarboxylase | |||||