New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 987 =3578 (0.350)192 (0.020) 37/232 NT 5.8% pseudogene (708/709 nt) USA300HOU_RS14890 replication protein
?NC_012417 1013 = 2958 (0.320)coding (182/192 nt) USA300HOU_RS15665 hypothetical protein

Only 100 of 1439 total aligned reads displayed.

TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012417/1137‑987
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATA  >  NC_012417/1013‑1152
                                                                                                                                                                                                                                                                                                   
TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACA                                                                                                                                                        >  1:256652/1‑141
TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACA                                                                                                                                                        >  1:1622001/1‑141
TCATACAAAGCTCTACTGTCTTATTTTTGTGTCACAATATATTGCTTTTTTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAATAAATCAACAAAAAAGACATTAGTCAACA                                                                                                                                                        <  3:559165/141‑1
 ttTACAAAGCGGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAGAGGCAGTAGTCAACAC                                                                                                                                                       <  2:796694/139‑1
 aATACAAAGCTGTAATATCTTATTTTTGTAACACAATATATTGCTTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAAAAAACAAAAAAGACATTAGTCAACAC                                                                                                                                                       <  2:1053531/140‑1
 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC                                                                                                                                                       <  1:445637/141‑1
 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC                                                                                                                                                       <  1:579758/141‑1
 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC                                                                                                                                                       >  1:1510739/1‑141
 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATAAACAAAAAAGACATTAGTCAACAC                                                                                                                                                       <  2:66958/141‑1
 CATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTAATTATAAAAAAAAAATCAACAAAAAAGACATTAGTCAACAC                                                                                                                                                       <  2:363895/141‑1
  aaaaAAAGCTATAAAGTATTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGACACAAAAATAAGACAGTACTTTTTTATAAAAAAAAAAAAAAAAAGACATTAGTCAACACT                                                                                                                                                      <  2:1154150/137‑1
  ATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACT                                                                                                                                                      <  3:97931/141‑1
  ATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACT                                                                                                                                                      <  1:1477376/141‑1
    ACAAATCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA                                                                                                                                                    <  1:672136/141‑1
    ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA                                                                                                                                                    >  1:768011/1‑141
    ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA                                                                                                                                                    <  1:210077/141‑1
    ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA                                                                                                                                                    <  2:613393/141‑1
    ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA                                                                                                                                                    <  3:72110/141‑1
    ACAAAGATGTAGTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATATAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAA                                                                                                                                                    <  2:1499810/141‑1
     CAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAAT                                                                                                                                                   >  2:750382/1‑141
     CAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAAT                                                                                                                                                   <  2:1108556/141‑1
     CAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAAT                                                                                                                                                   <  1:833419/141‑1
      AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATG                                                                                                                                                  <  1:48554/141‑1
      AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATG                                                                                                                                                  >  1:1595805/1‑141
      AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATG                                                                                                                                                  <  1:945040/141‑1
      AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATG                                                                                                                                                  >  1:1008917/1‑141
       aacagGTACTGACTTATTTTTGAAACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAAACAACAAAAAAGACATTAGTCAACACTAATGT                                                                                                                                                 <  2:262766/136‑1
       AAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGT                                                                                                                                                 >  4:693105/1‑141
       AAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGT                                                                                                                                                 >  3:125635/1‑141
       AAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTAAATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGT                                                                                                                                                 >  3:512254/1‑141
        AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC                                                                                                                                                >  3:348623/1‑141
        AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC                                                                                                                                                >  3:324494/1‑141
        AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC                                                                                                                                                >  1:286040/1‑141
        AGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTC                                                                                                                                                >  2:14342/1‑141
         GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTGTTGACTAATGTCT                                                                                                                                               >  1:321861/1‑141
         GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCT                                                                                                                                               >  1:1051216/1‑141
         GCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCT                                                                                                                                               >  1:909812/1‑141
          CTGTACTGTCTTATTTTTGTTTTTTTATATATTGCGTTTGTCTTATTTTTGTGACACTACATATAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT                                                                                                                                              >  2:1359/1‑141
          CTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT                                                                                                                                              >  1:87367/1‑141
          CTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT                                                                                                                                              >  2:447042/1‑141
                   CTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT                                                                                                                                              >  2:529404/1‑132
                                CACTATATATTGCGTTTGACTAATTTTTGTGACAATACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAA                                                                                                                        <  2:869510/141‑1
                                                                                  TCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC                                                                                                                                                       >  3:439662/1‑60
                                                                                  TCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACAC                                                                                                                                                       <  4:439662/60‑1
                                                                                                                             AAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAG                           >  1:1121718/1‑141
                                                                                                                             AAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAG                           >  2:463798/1‑141
                                                                                                                             AAGACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAG                           >  1:143017/1‑141
                                                                                                                               GACATTAGTCAACACTAATTTCTTTGTAGTTGATTGTTTATAAAAAATTACTGTCGGATGTTTGTGACAGATGCGGGATGTAGGGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCT                         >  1:242366/1‑141
                                                                                                                                ACATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTTTTTTAATTTACTATCTTATTTTTTTGACAATTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCCATATATTGTGTAACAAAAATAAGACAGTACAtaaa                        >  2:57909/1‑137
                                                                                                                                 CATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACACAAATAAGACAGTACAGCTTT                       >  4:23326/1‑141
                                                                                                                                  ATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTt                      >  2:1272525/1‑140
                                                                                                                                  ATTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTG                      >  1:177921/1‑141
                                                                                                                                   TTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGT                     >  4:356029/1‑141
                                                                                                                                   TTAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAATACGGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGT                     >  2:1403109/1‑141
                                                                                                                                    TAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTA                    >  1:1560550/1‑141
                                                                                                                                    TAGTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTA                    >  1:799267/1‑141
                                                                                                                                      GTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAG                           >  4:165173/1‑132
                                                                                                                                      GTCAACACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCATATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATG                  >  2:1471329/1‑141
                                                                                                                                        tttggCTAATGTCTTTTTTGTTGAATTATTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGAT                <  2:1538657/136‑1
                                                                                                                                           CACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATC             >  3:663679/1‑141
                                                                                                                                            ACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCA            >  1:1298166/1‑141
                                                                                                                                             ccAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAC           >  3:481709/3‑141
                                                                                                                                             CTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAC           >  1:364581/1‑141
                                                                                                                                             CTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAC           <  3:152785/141‑1
                                                                                                                                             CTAATGTCTTTTTTGTTGATGTGTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAC           <  1:1261689/141‑1
                                                                                                                                              TAATGTCTTTTTTGTTGATTTTTTATAAAGAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGCCAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT          <  4:397794/141‑1
                                                                                                                                              TAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT          <  1:404614/141‑1
                                                                                                                                              TAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT          <  4:292525/141‑1
                                                                                                                                              TAATGTCTTTTTTGTTGATTTATTATAAAAAAGTACTGTCATATTTTTGTGAAAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACT          <  2:972589/141‑1
                                                                                                                                               AATGTCTTTTTTTTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAATACAGTACAGCTTTGTATGATATCACTT         >  4:505879/1‑141
                                                                                                                                               AATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTT         <  2:1580564/141‑1
                                                                                                                                               AATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACA                                                                            >  2:844922/1‑74
                                                                                                                                                ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT        >  2:703903/1‑141
                                                                                                                                                ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT        <  2:1028499/141‑1
                                                                                                                                                ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT        <  1:529017/141‑1
                                                                                                                                                ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT        <  3:61716/141‑1
                                                                                                                                                ATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATAATATAACTTT        >  2:1319139/1‑141
                                                                                                                                                ATGTCTTTTTTGCTGTCAGCTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTT        <  3:391504/141‑1
                                                                                                                                                 TGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTA       <  1:1222333/141‑1
                                                                                                                                                 TGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTA       <  2:1209607/141‑1
                                                                                                                                                  GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA      <  4:636474/141‑1
                                                                                                                                                  GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA      >  1:1391056/1‑141
                                                                                                                                                  GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA      <  1:981318/141‑1
                                                                                                                                                  GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA      >  2:170711/1‑141
                                                                                                                                                  GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA      >  2:213166/1‑141
                                                                                                                                                  GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA      <  2:396265/141‑1
                                                                                                                                                  GTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCGGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAA      >  4:601943/1‑141
                                                                                                                                                   TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAA     <  1:714216/141‑1
                                                                                                                                                   TCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAA     <  1:623355/141‑1
                                                                                                                                                    CTTTTTTTTTTTTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACTAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA    >  2:314660/1‑141
                                                                                                                                                    CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAATACAGTAAAGCTTTGTATGATATCANTTTAAAA    >  2:1238921/1‑141
                                                                                                                                                    CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA    >  3:266661/1‑141
                                                                                                                                                    CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA    >  4:561605/1‑141
                                                                                                                                                    CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA    >  3:187267/1‑141
                                                                                                                                                    CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA    >  1:118258/1‑141
                                                                                                                                                    CTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAA    >  3:2198/1‑141
                                                                                                                                                     TTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAAT   >  1:1090038/1‑141
                                                                                                                                                     TTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAAT   <  1:1350258/141‑1
                                                                                                                                                      TTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATA  <  2:933469/141‑1
                                                                                                                                                      TTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTATCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATA  <  2:1630338/141‑1
                                                                                                                                                                                                                                                                                                   
TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACAGTACTTTTTTATAAAAAATCAACAAAAAAGACATTAGTCAACACTAATGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012417/1137‑987
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATA  >  NC_012417/1013‑1152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.