New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 760039168 (0.920)9 (0.060) 10/226 NT 5.5% intergenic (+13/+114) USA300HOU_RS03705/mgrA Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA
?USA300TCH1516_ALE = 760055 157 (0.970)intergenic (+29/+98) USA300HOU_RS03705/mgrA Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA

GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/759886‑760039
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaactgcttgaAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTCAAA  <  USA300TCH1516_ALE/760055‑759916
                                                                                                                                                                                                                                                                                                      
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA                                                                                                                                                           >  1:473437/1‑141
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA                                                                                                                                                           >  3:907/1‑141
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA                                                                                                                                                           >  3:97894/1‑141
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA                                                                                                                                                           <  3:108244/141‑1
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA                                                                                                                                                           >  1:244232/1‑141
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA                                                                                                                                                           >  3:235917/1‑141
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA                                                                                                                                                           >  2:1576730/1‑141
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAAAAGTTGAAAAGGGAAACGATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAA                                                                                                                                                           <  1:1359383/141‑1
 CTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAA                                                                                                                                                          <  3:580128/141‑1
 CTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAA                                                                                                                                                          >  4:580128/1‑141
  TACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAA                                                                                                                                                         <  3:145957/141‑1
  TACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAA                                                                                                                                                         <  3:313141/141‑1
     acccgcTTTAACGTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAA                                                                                                                                                      <  2:60795/135‑1
     ACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAA                                                                                                                                                      <  3:517554/141‑1
      CACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAATGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAAC                                                                                                                                                     >  4:83282/1‑141
       ACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAAac                                                                                                                                                    >  2:41354/1‑139
        CGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTG                                                                                                                                                   <  1:1012855/141‑1
        CGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTG                                                                                                                                                   <  2:996901/141‑1
        CGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTG                                                                                                                                                   <  1:1506720/141‑1
         GATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGC                                                                                                                                                  <  1:1548951/141‑1
          ATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCT                                                                                                                                                 <  1:1259221/141‑1
          ATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAACGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCT                                                                                                                                                 >  2:1279509/1‑141
           TTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTT                                                                                                                                                >  1:922850/1‑141
           TTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTT                                                                                                                                                <  1:1264911/141‑1
             TAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGA                                                                                                                                              >  3:102537/1‑141
             TAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGA                                                                                                                                              <  1:556319/141‑1
             TAACTTTATTGTCACGTTTTGAGACCATCATGGTGATGATAAATGGTAAAATAGTTGAACAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAAATGCTTGA                                                                                                                                              >  2:196288/1‑141
                          ACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGC                                                                                                                                 >  4:151008/1‑141
                            GTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCT                                                                                                                               <  1:152714/141‑1
                              TTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTAT                                                                                                                             <  2:1646197/141‑1
                                TGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCA                                                                                                                           <  3:206148/141‑1
                                 GAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAA                                                                                                                          <  1:1384032/141‑1
                                    ACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCA                                                                                                                       <  1:793444/141‑1
                                     CCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAG                                                                                                                      <  3:151008/141‑1
                                                                                                                       TATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTA                                    >  3:321557/1‑141
                                                                                                                       TATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTA                                    >  1:679431/1‑141
                                                                                                                                       GCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCAT                    >  1:1511598/1‑141
                                                                                                                                        CATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATC                   >  2:411890/1‑141
                                                                                                                                            AAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAA               >  3:513035/1‑141
                                                                                                                                             AAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAAT              <  4:128354/141‑1
                                                                                                                                              aacACTGCTTGGAAGGTTTCTTAGCCTACCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTGGCTAGTAATTGTTGATAGGTTCCCTTTTCAACTATTTTATCATTTTTGATCCCAATc             >  4:529766/4‑140
                                                                                                                                              AAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATG             >  1:270524/1‑141
                                                                                                                                              AAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATG             >  1:91267/1‑141
                                                                                                                                              AAAACTGCTTGAAAGGTTTCTTAGACTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATG             >  2:806791/1‑141
                                                                                                                                                AACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGTTAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGAT           >  2:1254448/1‑141
                                                                                                                                                 ACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATG          >  1:1035994/1‑141
                                                                                                                                                 ACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATG          <  1:266709/141‑1
                                                                                                                                                 ACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATG          >  2:1021228/1‑141
                                                                                                                                                  CTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGG         <  3:455369/141‑1
                                                                                                                                                  CTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGG         >  1:1065437/1‑141
                                                                                                                                                    GCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTC       >  4:550001/1‑141
                                                                                                                                                    GCTTGAAAGGTTTCTTAGCCTATCAACCATTTTTTTTATGCATGATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCACCTAGCTTACCATTTATCATCACAATGATGGcc       <  2:1251870/141‑3
                                                                                                                                                     CTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCCTAAAGCACCATGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCT      >  2:319441/1‑141
                                                                                                                                                      TTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTC     <  3:161457/141‑1
                                                                                                                                                      TTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTC     <  1:643557/141‑1
                                                                                                                                                      TTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTC     >  2:400937/1‑141
                                                                                                                                                      TTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTC     <  4:140410/141‑1
                                                                                                                                                      TTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTC     <  2:807334/141‑1
                                                                                                                                                      TTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTC     <  4:706046/141‑1
                                                                                                                                                      TTGAAAGGTTTCTTAGCCTACCAAGCAGTTTTGGTATGCATTATATTGAATCATATTCCATAAAGCACCCTGATTCGCTAGTAATTCTTGCTAGTTTCCCTGTTCAACTATTTTACCATTTATCCTCACAATGATGGTCTC     <  2:413611/141‑1
                                                                                                                                                       TGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTCA    >  3:333577/1‑141
                                                                                                                                                       TGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTCA    >  2:1517570/1‑141
                                                                                                                                                       TGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTCA    >  1:15800/1‑141
                                                                                                                                                         AAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTCAAA  >  2:924761/1‑141
                                                                                                                                                                                                                                                                                                      
GCTACACACGATTTAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/759886‑760039
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaactgcttgaAAGGTTTCTTAGCCTATCAAGCAGTTTTTTTATGCATTATATTGAATCATATTCCATAAAGCACCTTGATTAGCTAGTAATTGTTGATAGTTTCCCTTTTCAACTATTTTACCATTTATCATCACAATGATGGTCTCAAA  <  USA300TCH1516_ALE/760055‑759916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.