New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 1026972 = | 183 (1.000) | 9 (0.050) | 7/242 | NT | 5.1% | intergenic (+13/‑221) | USA300HOU_RS05060/USA300HOU_RS05065 | hypothetical protein/Serine protease HtrA‑like protein |
? | USA300TCH1516_ALE | 1027002 = | 162 (0.930) | intergenic (+43/‑191) | USA300HOU_RS05060/USA300HOU_RS05065 | hypothetical protein/Serine protease HtrA‑like protein |
ATTTCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGATTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1027117‑1026972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTAG > USA300TCH1516_ALE/1027002‑1027141 ATTTCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGAT < 2:3567/141‑1 TTTCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGATT < 3:656815/141‑1 TTTCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTAAAAAAAATAAAAAAGGACAACCTTAAACTAAATTAAGATT < 2:1054110/141‑1 TTCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGATTG < 4:301639/141‑1 TTCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGATTG < 2:4868/141‑1 TCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGATTGT > 1:55678/1‑141 TCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGATTGT < 2:1612949/141‑1 TATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGATTGTCC < 3:102527/141‑1 GCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATG < 1:338732/141‑1 TAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAAT < 4:374226/117‑1 TAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAAT > 3:374226/1‑117 GACAACCTTAAACTAAATTAAGATTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAG > 2:1114246/1‑141 ACAACCTTAAACTAAATTAAGATTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGA > 2:1531489/1‑141 ACAACCTTAAACTAAATTAAGATTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGA > 2:152103/1‑141 CAACCTTAAACTAAATTAAGATTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAA > 1:1105019/1‑141 CAACCTTAAACTAAATTAAGATTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAA > 1:1436318/1‑141 CCTTAAACTAAATTAAGATTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATT > 1:76642/1‑141 TTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAA < 2:1581238/141‑1 TTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAA < 2:1581611/141‑1 TGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAA < 1:856799/141‑1 TGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAA < 1:856782/141‑1 GTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTTTTTATTATTTATATAGATTTTAAAGCACAT > 2:1292149/1‑141 GTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAAT > 2:541755/1‑141 CCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTA < 2:214282/141‑1 CCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTA < 2:1483392/141‑1 CTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTAG < 2:1524963/141‑1 ATTTCTATTGAAAAAATGCTAAATATAAAAGGCACATTTTCTTAATACTATATCGCATCTTTTGATTCACATTCTTCAAAATCCATTTTTCATAAATCACTCAATTAAATGAAAAAGGACAACCTTAAACTAAATTAAGATTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1027117‑1026972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTAG > USA300TCH1516_ALE/1027002‑1027141 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |