New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 1533866 = | 173 (0.950) | 9 (0.050) | 9/232 | NT | 5.7% | coding (219/588 nt) | USA300HOU_RS07480 | hypothetical protein |
? | USA300TCH1516_ALE | 1533900 = | 138 (0.830) | coding (185/588 nt) | USA300HOU_RS07480 | hypothetical protein |
ATATCGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1534016‑1533866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAA > USA300TCH1516_ALE/1533900‑1534039 ATATCGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGC < 3:395988/141‑1 ttttTTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTC > 2:609303/5‑141 CGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCT < 1:1505612/141‑1 CGATTTAAGTCGCGTATTGCAGCTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCT > 1:346348/1‑141 ATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGTGGCGAAATTGGCAAACAGTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 4:607531/141‑1 ATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGTAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 2:276200/141‑1 ATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 1:1520298/141‑1 ATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAAGTAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 3:509321/141‑1 TTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAA < 1:1156524/141‑1 AGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTATGCAATac > 2:895761/1‑139 AGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAA < 4:503358/125‑1 AGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAA > 3:503358/1‑125 CTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGACGTCACGCTTCTGC > 1:1263090/1‑108 CTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 2:1263090/108‑1 ATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTAT < 2:447119/141‑1 AACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGA > 1:951776/1‑99 AACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGA < 2:951776/99‑1 TGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAA > 1:1466294/1‑141 GTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATAT > 2:960562/1‑141 TGGGGAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATT > 2:320456/1‑141 GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTG > 2:79689/1‑141 GGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCGCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGA > 3:187219/1‑141 AAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAAAACGCGACTTAAATCGATATTGAAA > 3:507660/1‑141 TTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATA > 1:1129601/1‑141 CTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAACAAGTAAATATT > 1:809840/1‑141 CTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATT > 2:78859/1‑141 CTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATT > 2:1124103/1‑141 CTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATT > 3:137850/1‑141 TGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTC > 1:588458/1‑141 TGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTC > 1:1414222/1‑141 TGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTC < 1:79689/141‑1 CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAA < 4:648692/141‑1 CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAA < 1:284911/141‑1 CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAA < 1:6980/141‑1 CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAA > 2:1027205/1‑141 AATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAAT < 1:1629226/141‑1 TTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAA > 1:1614231/1‑141 TTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAA < 1:347637/141‑1 TTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAACTATTCAATAAA > 2:946704/1‑141 ATATCGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1534016‑1533866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAA > USA300TCH1516_ALE/1533900‑1534039 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |