New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2256396 =176 (0.960)15 (0.090) 11/226 NT 9.6% intergenic (+49/+72) deoD1/dps Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U
?USA300TCH1516_ALE 2256443 = 125 (0.770)intergenic (+96/+25) deoD1/dps Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U

ATGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2256547‑2256396
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTCGATTGCGT  >  USA300TCH1516_ALE/2256443‑2256580
                                                                                                                                                                                                                                                                                                  
ATGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATG                                                                                                                                                       <  3:549884/141‑1
ATGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATG                                                                                                                                                       <  3:549824/141‑1
ATGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATG                                                                                                                                                       <  2:843822/141‑1
 TGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGT                                                                                                                                                      >  1:253370/1‑141
 TGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGT                                                                                                                                                      >  2:285372/1‑141
 TGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGT                                                                                                                                                      >  2:1118729/1‑141
 TGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGT                                                                                                                                                      >  1:821532/1‑141
   TATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGT                                                                                                                                                    >  2:1036215/1‑141
   TATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGT                                                                                                                                                    >  1:614507/1‑141
   TATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGT                                                                                                                                                    <  2:1201406/141‑1
   TATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGT                                                                                                                                                    <  3:148098/141‑1
     TCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTG                                                                                                                                                  >  1:89460/1‑141
     TCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTG                                                                                                                                                  <  1:1629597/141‑1
     TCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTG                                                                                                                                                  >  1:635183/1‑141
     TCAGAAGATATGTTTATAGGAATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTG                                                                                                                                                  >  2:1094919/1‑141
         AAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTT                                                                                                                                              >  1:598334/1‑141
         AAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTT                                                                                                                                              <  1:2613/141‑1
          AGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTT                                                                                                                                             >  3:355919/1‑141
          AGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTT                                                                                                                                             <  1:911982/141‑1
           GATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTT                                                                                                                                            >  3:439485/1‑141
           GATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTT                                                                                                                                            >  1:1142933/1‑141
                                         GATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATCAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGC                                                                                                              >  1:887847/1‑141
                                                                                             AATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATT                                                                                                                                <  4:569918/71‑1
                                                                                             AATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATT                                                                                                                                >  3:569918/1‑71
                                                                                                         AAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATC                                              >  1:694504/1‑141
                                                                                                             GCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCT                                          >  1:973459/1‑141
                                                                                                                      TAAATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCA                                 >  3:284376/1‑141
                                                                                                                       AAATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCAT                                >  2:273743/1‑141
                                                                                                                        AATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTCGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACAAATCTTCTGATACGTCATC                               >  4:522164/1‑141
                                                                                                                        AATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATC                               >  4:25385/1‑141
                                                                                                                        AATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATC                               >  2:534656/1‑141
                                                                                                                         ATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCG                              >  2:1026083/1‑141
                                                                                                                         ATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCG                              >  1:261212/1‑141
                                                                                                                         ATGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATAGTATTACTTATCTGTAGATTAGCTTAAGTAAGAGTTAAACATCCAATTATGTTTATCTACTGATGTTAGCATACCTATAAACATATCTTCTGATACATCATCG                              >  4:132983/1‑141
                                                                                                                          TGGGGATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGC                             >  1:66645/1‑141
                                                                                                                              GATACGCCCAGAATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGC                         >  1:513127/1‑141
                                                                                                                                          ATGTGTTGGCTTTTATTTATATTATTACTTATCTTTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTGTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAAT             >  1:998505/1‑141
                                                                                                                                          ATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAAT             >  2:1346616/1‑141
                                                                                                                                           TGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATT            >  2:819156/1‑141
                                                                                                                                            GTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTT           >  1:1578729/1‑141
                                                                                                                                            GTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACA                                    >  1:1295263/1‑116
                                                                                                                                            GTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACA                                    <  2:1295263/116‑1
                                                                                                                                             TGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTC          >  2:717800/1‑141
                                                                                                                                             TGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTC          >  2:1324935/1‑141
                                                                                                                                               TTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTCGA        <  3:679872/141‑1
                                                                                                                                               TTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTCGA        >  4:32298/1‑141
                                                                                                                                                TGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTCGAT       <  1:686328/141‑1
                                                                                                                                                TGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTCGAT       <  2:1352036/141‑1
                                                                                                                                                   CTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTCGATTGC    <  2:1548487/141‑1
                                                                                                                                                     TTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTCGATTGCGT  <  1:1437786/141‑1
                                                                                                                                                                                                                                                                                                  
ATGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGGATGTTTAAATCTTACTTAAGCTAATCTACAGATAAGTAATAATATAAATAAAAGCCAACACATAAATGGGGATACGCCCAGAATGTGTTGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2256547‑2256396
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACATATCTTCTGATACATCATCGCCAGCATTACCAGCAATTTCGATTGCGT  >  USA300TCH1516_ALE/2256443‑2256580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.