New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2716742 =154 (0.840)12 (0.070) 11/232 NT 7.2% intergenic (+50/+100) USA300HOU_RS13965/USA300HOU_RS13970 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 2716816 = 168 (1.010)intergenic (+124/+26) USA300HOU_RS13965/USA300HOU_RS13970 hypothetical protein/hypothetical protein

GCAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2716892‑2716742
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACTT  >  USA300TCH1516_ALE/2716816‑2716954
                                                                                                                                                                                                                                                                                                  
GCAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAG                                                                                                                                                       >  2:490243/1‑141
 aAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT                                                                                                                                                      <  1:349790/140‑1
 CAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT                                                                                                                                                      <  1:251069/141‑1
 CAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT                                                                                                                                                      <  2:1032933/141‑1
 CAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGT                                                                                                                                                      <  1:687290/141‑1
    TGTTCAACGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATG                                                                                                                                                   >  3:561098/1‑141
    TGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATG                                                                                                                                                   >  3:685327/1‑141
    TGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATG                                                                                                                                                   >  4:453025/1‑141
     GTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG                                                                                                                                                  <  1:1383058/141‑1
     GTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG                                                                                                                                                  >  2:914996/1‑141
     GTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGG                                                                                                                                                  <  2:1551468/141‑1
      TTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG                                                                                                                                                 >  1:1297033/1‑141
      TTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGG                                                                                                                                                 >  1:484892/1‑141
       TCAAAGATCTTGATGGACACCATTTTACTTTTTTGGTCTGCTAAAATGAAATACCCAAAAGAATAAATAAAAAGCCCATACAGAGATGCAGCGTAATGTGCACCATGGTGCGACACACTAGTGTCTTCAATCAGTATGGGC                                                                                                                                                >  2:1630255/1‑141
       TCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC                                                                                                                                                <  1:318708/141‑1
       TCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC                                                                                                                                                <  3:182020/141‑1
       TCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC                                                                                                                                                <  3:162271/141‑1
        CAAAGATCTTGATGGACACCATTTTAATTTTTTTTTTTTTTTTAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT                                                                                                                                               >  2:1591310/1‑141
        CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT                                                                                                                                               <  3:229629/141‑1
        CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT                                                                                                                                               >  2:1419511/1‑141
        CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT                                                                                                                                               >  2:44665/1‑141
        CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT                                                                                                                                               <  2:244243/141‑1
        CAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCAGACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCT                                                                                                                                               <  2:1390377/141‑1
         AAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTT                                                                                                                                              <  2:356801/141‑1
         AAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTT                                                                                                                                              <  2:95421/141‑1
         AAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTT                                                                                                                                              <  4:306980/141‑1
         AAAGATCTTGAGGGATAGCATTGTGATTTTTAGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGGAATGTGCACCATGGTGCGACACATTAGTGTCTTCAAGCAGTATGGCCTT                                                                                                                                              <  2:989579/141‑1
          AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT                                                                                                                                             >  2:970327/1‑141
          AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT                                                                                                                                             <  1:1358262/141‑1
          AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT                                                                                                                                             >  1:1329421/1‑141
          AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT                                                                                                                                             <  2:441965/141‑1
          AAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGAGCATACAGAGATGAAGCGTAATTTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT                                                                                                                                             >  1:744704/1‑141
                                                                          TAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTAGTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGAT                                                                             >  1:1159425/1‑141
                                                                             AAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTT                                                                          >  1:1463664/1‑141
                                                                                 CCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAA                                                                      >  2:756027/1‑141
                                                                                  CCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAAC                                                                     >  2:1500256/1‑141
                                                                                     TACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATT                                                                  >  1:425930/1‑141
                                                                                     TACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATC                                                                                  >  3:678297/1‑125
                                                                                     TACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATC                                                                                  <  4:678297/125‑1
                                                                                                 GCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC‑‑TTTGTTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA                                                        <  2:1567323/137‑1
                                                                                                 GCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGC‑‑TTTGTTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAA                                                        >  1:1567323/1‑137
                                                                                                                 GGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTG                                      <  1:1500256/141‑1
                                                                                                                 GGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTG                                      >  1:658873/1‑141
                                                                                                                    GCGACACATTAGTGTCNTCAATCAGTATGNGCTTTTTATTTATGCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTT                                   >  1:954916/1‑141
                                                                                                                                       AATCAGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACC                <  2:1062524/141‑1
                                                                                                                                             TATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTC          <  2:314053/141‑1
                                                                                                                                               TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTT        >  1:27290/1‑141
                                                                                                                                               TGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAAATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTT        <  2:1354138/141‑1
                                                                                                                                                GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTT       <  1:1316354/141‑1
                                                                                                                                                GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTT       <  2:708073/141‑1
                                                                                                                                                GGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTT       <  3:78279/141‑1
                                                                                                                                                 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTC      >  1:1247681/1‑141
                                                                                                                                                 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTC      >  4:186732/1‑141
                                                                                                                                                 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTC      <  1:1461641/141‑1
                                                                                                                                                 GGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTC      >  2:1292163/1‑141
                                                                                                                                                  GCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCA     >  1:688093/1‑141
                                                                                                                                                  GCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCA     >  1:688132/1‑141
                                                                                                                                                   CTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCAC    <  2:275623/141‑1
                                                                                                                                                    TTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCATCCGCTTCTTTCACT   >  2:1166514/1‑141
                                                                                                                                                    TTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACT   >  3:410648/1‑141
                                                                                                                                                    TTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACT   >  1:1447109/1‑141
                                                                                                                                                     TTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACTT  <  4:379834/141‑1
                                                                                                                                                     TTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACTT  <  2:537754/141‑1
                                                                                                                                                                                                                                                                                                  
GCAATGTTCAAAGATCTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTGCACCATGGTGCGACACATTAGTGTCTTCAATCAGTATGGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2716892‑2716742
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgggctttTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCTTCTTTCACTT  >  USA300TCH1516_ALE/2716816‑2716954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.