BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	987 =	3578 (0.350)	192 (0.020)	37/232	NT	5.8%	pseudogene (708/709 nt)	USA300HOU_RS14890	replication protein
*	?	NC_012417	1013 =	2958 (0.320)	192 (0.020)	37/232	NT	5.8%	coding (182/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 12668 total aligned reads displayed.

AAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGC  >  NC_012417/847‑1128

aaaCATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                                                               >  2:1123965‑M1/1‑141 (MQ=255)

aaaCATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                                                               >  2:1499935‑M1/1‑141 (MQ=255)

aaaCATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTA                                                                                                                                               >  1:573349‑M1/1‑141 (MQ=255)

  ttttaaagtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAg                                                                                                                                             >  2:394890‑M1/139‑141 (MQ=255)

    ttaaagtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGAc                                                                                                                                           <  3:255879‑M1/5‑1 (MQ=255)

    aTAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                                                           <  1:700087‑M1/141‑1 (MQ=255)

    aTAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAC                                                                                                                                           <  1:238882‑M1/141‑1 (MQ=255)

     tAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACA                                                                                                                                          >  1:198941‑M1/1‑141 (MQ=255)

      aaaaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                                                         >  1:1649294‑M1/1‑141 (MQ=255)

      aaaaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACAAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAT                                                                                                                                         <  2:1083043‑M1/141‑1 (MQ=255)

       aaaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                                                                        >  4:648655‑M1/1‑141 (MQ=255)

       aaaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                                                                        <  1:1207635‑M1/141‑1 (MQ=255)

       aaaTTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT                                                                                                                                        >  3:30052‑M1/1‑141 (MQ=255)

        agtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACATTa                                                                                                                                       <  2:1629025‑M1/9‑1 (MQ=255)

        agtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaAAGACATTa                                                                                                                                       <  2:563159‑M1/9‑1 (MQ=255)

          ttttAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGT                                                                                                                                     >  2:1250898‑M1/1‑141 (MQ=255)

           tttAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAgtg                                                                                                                                    <  1:315007/141‑1 (MQ=255)

             tAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAGAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGtt                                                                                                                                  <  2:816739/141‑1 (MQ=255)

              aaaCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTg                                                                                                                                 >  3:177550/1‑141 (MQ=255)

               aaCTTAGACGATGTCGAAGATGGTAATGTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGa                                                                                                                                <  4:561238‑M2/141‑2 (MQ=255)

                aCTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGac                                                                                                                               >  2:1294259‑M2/1‑139 (MQ=255)

                 cTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGact                                                                                                                              <  1:909327‑M2/141‑4 (MQ=255)

                  ttAGACGATGTGGAAGTTTGTAGTTTGATTAATGTGAGTGATGATGTTAAAAAAACAGACAAAGAAAAAAAAGCACATTCAATTACCGAAATTTGGAATTTCGAAAAGCAAGATTATTATTTAAGACATTAGTGTTGACTa                                                                                                                             <  4:511341/141‑1 (MQ=14)

                   tAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaa                                                                                                                            <  4:607604‑M2/141‑6 (MQ=255)

                       cGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGactaatgtc                                                                                                                        <  3:505002‑M2/141‑10 (MQ=255)

                          tGTCGAAGATGGTAATTTGATTAATGCAAGCGATGAAGATAAAACAACAGACGGAGGAGAAAAATCACATTCAATTACCTCAATTTGGAATTCCGAAAAGCAAAATTATTATTTAAGACATTAGTGTCGactaatgtgttg                                                                                                                     <  2:611101‑M2/141‑13 (MQ=255)

                           gTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttt                                                                                                                    >  2:862866/1‑141 (MQ=255)

                             cGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCACTTTGCAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttttt                                                                                                                  <  3:546998/141‑1 (MQ=255)

                               aaGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgt                                                                                                                <  1:1370000/141‑1 (MQ=255)

                               aaGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgt                                                                                                                <  1:1044640/141‑1 (MQ=255)

                                aGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgtt                                                                                                               <  1:108784/141‑1 (MQ=255)

                                 gATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGTACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgttg                                                                                                              <  4:464860/141‑1 (MQ=255)

                                      TAATTTGATTAATGCAAGTGATGAAGATAAAACAGCAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGTtttt                                                                                                         >  1:1533124‑M1/1‑141 (MQ=255)

                                       AATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAttttt                                                                                                        <  2:473646‑M1/141‑1 (MQ=255)

                                       AATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAttttt                                                                                                        >  2:776219‑M1/1‑141 (MQ=255)

                                       AATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAttttt                                                                                                        >  1:277652‑M1/1‑141 (MQ=255)

                                                   gCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTA                                                                                            >  3:73830‑M1/1‑141 (MQ=255)

                                                       gTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                                                                        >  1:956325‑M1/1‑141 (MQ=255)

                                                        tgatgaATATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTC                                                                                       <  2:1042489‑M1/141‑1 (MQ=255)

                                                        tgatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTC                                                                                       <  4:416628‑M1/141‑1 (MQ=255)

                                                         gatgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                                                      <  4:175308‑M1/141‑1 (MQ=255)

                                                          atgaAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTT                                                                                     <  4:69687‑M1/141‑1 (MQ=255)

                                                           tgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTA                                                                                    >  2:134157‑M1/1‑141 (MQ=255)

                                                           tgaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTCTGGTGATTTTTTATAAAAAAGTACTGTCTTA                                                                                    >  3:628388‑M1/1‑141 (MQ=255)

                                                            gaAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                                                   <  2:270155‑M1/141‑1 (MQ=255)

                                                             aaGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATCATTATTTAAGACATTAGTGTTGACTAATGTATTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATT                                                                                  >  1:827230‑M1/1‑141 (MQ=255)

                                                                  aaaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGT                                                                             >  3:463966‑M1/1‑141 (MQ=255)

                                                                  aaaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGT                                                                             >  3:214970‑M1/1‑141 (MQ=255)

                                                                   aaaCAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTTATTTTTTATAAAAAAGTACTGTCTTATTTTTGTG                                                                            >  2:1540773‑M1/1‑141 (MQ=255)

                                                                    aacaacAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                                           <  2:990431‑M1/141‑1 (MQ=255)

                                                                     acaacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                          >  1:1000717‑M1/1‑141 (MQ=255)

                                                                     acaacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                          <  1:447861‑M1/141‑1 (MQ=255)

                                                                     acaacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                                          >  2:222104‑M1/1‑141 (MQ=255)

                                                                      caacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACA                                                                         <  1:1411817‑M1/141‑1 (MQ=255)

                                                                       aacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa                                                                        <  2:138598/141‑1 (MQ=255)

                                                                       aacaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa                                                                        <  1:788630/141‑1 (MQ=255)

                                                                        acaGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAATCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                                                       <  2:1584156/141‑1 (MQ=255)

                                                                          aGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATg                                                                     <  1:40529/141‑1 (MQ=255)

                                                                           gACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                                                                    >  1:1488759/1‑141 (MQ=255)

                                                                           gACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                                                                    <  2:305774/141‑1 (MQ=255)

                                                                            aCGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCt                                                                   >  4:273815/1‑141 (MQ=255)

                                                                             cGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtg                                                                  >  4:121798/1‑141 (MQ=255)

                                                                             cGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtg                                                                  <  1:661388/141‑1 (MQ=255)

                                                                               aagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgta                                                                <  4:230040/141‑1 (MQ=255)

                                                                                 gaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatg                                                              <  2:1166620/141‑1 (MQ=255)

                                                                                   agaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatgta                                                            <  2:951945/141‑1 (MQ=255)

                                                                                   agaaAAAGCACATTCAATTAACGAAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTAAAAAAAAAAAAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcat                                                            <  2:183240‑M1/141‑14 (MQ=255)

                                                                                      aaaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtg                                                         >  4:32165‑M2/1‑139 (MQ=255)

                                                                                       aaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTTTGACAAATGCTGTATGTAGtgt                                                        <  1:356408‑M2/141‑4 (MQ=255)

                                                                                        aaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtc                                                       >  1:52683‑M2/1‑137 (MQ=255)

                                                                                         aGCACATTCAATTACTGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACAATAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTGATTTTTGTGACAAATGCTGTATGTAGtgtca                                                      >  3:346103‑M2/1‑136 (MQ=255)

                                                                                         aGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTTTTTTTTTTTTTTAAAAAAGTACTGTCTTATTTTTTTGACAAATGCTGTATGTTGtgtca                                                      <  2:1000298‑M2/141‑6 (MQ=255)

                                                                                          gCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcac                                                     <  1:1443594‑M2/141‑7 (MQ=255)

                                                                                          gCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcac                                                     <  2:435283‑M2/141‑7 (MQ=255)

                                                                                          gCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcac                                                     >  3:42353‑M2/1‑135 (MQ=255)

                                                                                          gCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTATTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcac                                                     >  2:735779‑M2/1‑135 (MQ=255)

                                                                                           cacaTTCAATTACCGCAATTTGCAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAATAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcaca                                                    >  3:590789‑M2/1‑134 (MQ=255)

                                                                                           aaaattcAATTACCGAAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGAAATTAGTGTTGACTAATGTCTTTTTTGTTAAAAAAAAAAAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttgtcaca                                                    <  2:1463011‑M1/138‑22 (MQ=255)

                                                                                              aTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGCCTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTAAGTAGtgtcacaaaa                                                 <  1:620462‑M2/141‑11 (MQ=255)

                                                                                                tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaat                                               >  1:1320063‑M2/1‑129 (MQ=255)

                                                                                                tCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaat                                               >  3:674834‑M2/1‑129 (MQ=255)

                                                                                                      aCCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAG                                                                                                                                      <  4:369986‑M1/48‑1 (MQ=255)

                                                                                                           aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGACTTTATTGTAGATTTTTTATAGAACAGTACTGTCTTTTTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGc                                    <  1:746632/141‑1 (MQ=18)

                                                                                                            aTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                   >  2:350085/1‑141 (MQ=255)

                                                                                                               tGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAGATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata                                <  2:1424446/141‑1 (MQ=255)

                                                                                                               tGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata                                >  2:647356/1‑141 (MQ=255)

                                                                                                                     ttCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGt                          >  3:385634‑M2/1‑140 (MQ=255)

                                                                                                                      tCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtg                         <  1:161041‑M2/141‑3 (MQ=255)

                                                                                                                      tCGAAAAGCAAAAATAATATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtg                         <  2:907153‑M2/141‑3 (MQ=255)

                                                                                                                         aaaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtca                      <  2:691758‑M1/141‑52 (MQ=255)

                                                                                                                         aaaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                      >  1:1245419‑M2/1‑136 (MQ=255)

                                                                                                                           aaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                    >  1:1165321‑M2/1‑134 (MQ=255)

                                                                                                                             gCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTTTTTTTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                  <  2:517131‑M2/141‑10 (MQ=255)

                                                                                                                                   ttattattTAAGACATTAGTgttgactaatgtcttaaataataattttgcttttcgaaattccaaattgcggtaattgaatgtgctttttcttcttcgtctgttgttttatcttcatcacttgca                            <  1:482901‑M1/125‑106 (MQ=255)

                                                                                                                                     attattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac          >  1:1120664‑M2/1‑124 (MQ=255)

                                                                                                                                      ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagaca         >  2:1208704‑M2/1‑123 (MQ=255)

                                                                                                                                      ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagaca         <  1:867616‑M2/141‑19 (MQ=255)

                                                                                                                                        attTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagt       >  3:135991‑M2/1‑121 (MQ=255)

                                                                                                                                          ttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAAAAATGATGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac     >  1:1570195‑M2/1‑119 (MQ=255)

                                                                                                                                           tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa    <  1:128326/141‑1 (MQ=255)

AAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGC  >  NC_012417/847‑1128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.