New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 760039168 (0.920)9 (0.060) 10/226 NT 5.5% intergenic (+13/+114) USA300HOU_RS03705/mgrA Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA
?USA300TCH1516_ALE = 760055 157 (0.970)intergenic (+29/+98) USA300HOU_RS03705/mgrA Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA

Only 100 of 264 total aligned reads displayed.

TAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGC  >  USA300TCH1516_ALE/759899‑760179
                                                                                                                                            |                                                                                                                                            
tAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGA                                                                                                                                              <  1:556319‑M1/141‑1 (MQ=255)
 aaCTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAt                                                                                                                                             >  3:207071/1‑141 (MQ=255)
 aaCTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAt                                                                                                                                             >  2:1488850/1‑141 (MQ=255)
   cTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAg                                                                                                                                           >  1:1216990/1‑141 (MQ=255)
   cTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAg                                                                                                                                           >  2:1342018/1‑141 (MQ=255)
     ttATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGc                                                                                                                                         <  1:129978/141‑1 (MQ=255)
     ttATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGc                                                                                                                                         <  2:1351464/141‑1 (MQ=255)
       aTTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCTATATAATGCATAAAAAAACTGCTTGATAGGCTa                                                                                                                                       <  1:860374/141‑1 (MQ=255)
       aTTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTa                                                                                                                                       <  1:171843/141‑1 (MQ=255)
         tGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCAAAAAAAAACTGCTTGATAGGCTAAg                                                                                                                                     <  2:371314/141‑1 (MQ=255)
          gTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTGATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGa                                                                                                                                    <  2:1644223/141‑1 (MQ=255)
          gTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGa                                                                                                                                    <  1:1421777/141‑1 (MQ=255)
          gTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGa                                                                                                                                    >  1:681755/1‑141 (MQ=255)
           ttaagTTTTGAGAGCATCATTGTGATGATAAATGGTAAAACAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAAAGAAAAAAAAAACTGCTTGATAGGCTAAGaa                                                                                                                                   <  4:626657/137‑1 (MQ=255)
           tCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGaa                                                                                                                                   <  4:419674/141‑1 (MQ=255)
           tCACGTTTTGAGACCAACATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATAAATGTGCTTTATGGAATATGATTCAATAAAATAAAAAAAAAAACTGCTTGATAGGCTAAGaa                                                                                                                                   <  4:267801/141‑1 (MQ=255)
             aCGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAAc                                                                                                                                 >  1:146753/1‑141 (MQ=255)
             aCGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAAc                                                                                                                                 >  1:909671/1‑141 (MQ=255)
             aCGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAAc                                                                                                                                 >  1:1353095/1‑141 (MQ=255)
             aCGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAAc                                                                                                                                 >  1:634632/1‑141 (MQ=255)
             aCGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAAc                                                                                                                                 >  2:719095/1‑141 (MQ=255)
                   tGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtca                                                                                                                           >  2:1517570‑M2/1‑138 (MQ=255)
                    gagaCCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaa                                                                                                                          <  2:807334‑M2/141‑5 (MQ=255)
                      gaCCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagc                                                                                                                        >  4:550001‑M2/1‑135 (MQ=255)
                        ccATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcag                                                                                                                      >  1:1065437‑M2/1‑133 (MQ=255)
                         catcatTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagt                                                                                                                     <  1:266709‑M2/141‑10 (MQ=255)
                         catcatTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagt                                                                                                                     >  2:1021228‑M2/1‑132 (MQ=255)
                         catcatTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagt                                                                                                                     >  1:1035994‑M2/1‑132 (MQ=255)
                            gattGGGATCAAAAATGATAAAATAGTTGAAAAGGGAACCTATCAACAATTACTAGCCAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGGTAGGCTAAGAAACCTTccaagcagtgtt                                                                                                                  >  4:529766‑M2/2‑129 (MQ=255)
                             atTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagttttt                                                                                                                 <  4:128354‑M2/141‑14 (MQ=255)
                              ttGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagtttttt                                                                                                                >  3:513035‑M2/1‑127 (MQ=255)
                               tgtgATGATAGATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTta                                                                                                               >  2:905405/1‑141 (MQ=255)
                               tgtgATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTta                                                                                                               <  3:664854/141‑1 (MQ=255)
                                  gatgatAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTtaact                                                                                                            >  2:1210169/1‑141 (MQ=255)
                                  gatgatAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTtaact                                                                                                            >  4:454449/1‑141 (MQ=255)
                                  gatgatAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTAtcaagcagtttttttatg                                                                                                            >  2:411890‑M2/1‑123 (MQ=255)
                                   atgatAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATGTAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTtaacta                                                                                                           >  2:187577/1‑141 (MQ=255)
                                    tgatAAATGTTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTtaactaa                                                                                                          <  2:646162/141‑1 (MQ=255)
                                          aTGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCt                                                                                                    >  1:29652/1‑141 (MQ=255)
                                          aTGGTAAAATAGTTGAAAAACGAAACTATCAACAATTACACGCTAATCAACGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCt                                                                                                    <  3:147145/141‑1 (MQ=255)
                                                aaaTAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTAcgcg                                                                                              >  3:704023/1‑141 (MQ=255)
                                                aaaTAGTTGAAAAGGCAAACTATCAACAATTACTCGCTAATCAAGGAGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTAcgcg                                                                                              <  4:102537/141‑1 (MQ=255)
                                                 aaTAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGt                                                                                             <  1:76340/141‑1 (MQ=255)
                                                 aaTAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGt                                                                                             >  1:819691/1‑141 (MQ=255)
                                                 aaTAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGt                                                                                             <  2:681401/141‑1 (MQ=255)
                                                   tAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTAtcaagcagtttttttatgcattatattgaatcata                                                                                           >  3:321557‑M2/1‑106 (MQ=255)
                                                     gTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTa                                                                                         <  2:407453/141‑1 (MQ=255)
                                                     gTTGAAAAGGGAAACTATCAACAATTACGAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTa                                                                                         <  3:627758/141‑1 (MQ=255)
                                                      ttGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTaa                                                                                        <  1:1099057/141‑1 (MQ=255)
                                                         aaaaGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTg                                                                                     <  4:176207/141‑1 (MQ=255)
                                                         aaaaGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTg                                                                                     >  1:968171/1‑141 (MQ=255)
                                                              ggAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGttttt                                                                                <  4:704023/141‑1 (MQ=255)
                                                               gAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTc                                                                               <  1:618779/141‑1 (MQ=255)
                                                               gAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTc                                                                               >  2:61607/1‑141 (MQ=255)
                                                                aaaCTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACGAGCTTACGCGTGCTAATTGTTTTTCt                                                                              >  4:683221/1‑141 (MQ=255)
                                                                aaaCTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCt                                                                              <  4:141700/141‑1 (MQ=255)
                                                                  aCTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAt                                                                            >  3:205918/1‑141 (MQ=255)
                                                                  aCTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAt                                                                            >  1:336536/1‑141 (MQ=255)
                                                                   cTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAtt                                                                           <  1:101730/141‑1 (MQ=255)
                                                                      tCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCtt                                                                        <  2:1516358/141‑1 (MQ=255)
                                                                         acaaTTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTtaat                                                                     >  2:602451/1‑141 (MQ=255)
                                                                               aCTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTc                                                               >  2:41835/1‑141 (MQ=255)
                                                                                       aTCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACAtt                                                       <  1:1392749/141‑1 (MQ=255)
                                                                                         cAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTAc                                                     >  2:1185840/1‑141 (MQ=255)
                                                                                          aaGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACt                                                    >  1:422105/1‑141 (MQ=255)
                                                                                            ggTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACttt                                                  >  2:963138/1‑141 (MQ=255)
                                                                                            ggTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACttt                                                  <  4:262563/141‑1 (MQ=255)
                                                                                             gTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTa                                                 >  2:1479155/1‑141 (MQ=255)
                                                                                              tGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTaa                                                >  1:1330315/1‑141 (MQ=255)
                                                                                                    aTGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCa                                          >  2:270556/1‑141 (MQ=255)
                                                                                                     tGGAATATGATTCAATATAATGCATAAGAAAACTGCTTGATAGGCTAAGACGCCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCAt                                         <  2:784114/141‑1 (MQ=255)
                                                                                                     tGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAGACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCAt                                         <  2:37895/141‑1 (MQ=255)
                                                                                                        aaTATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGAc                                      <  4:907/141‑1 (MQ=255)
                                                                                                          tatGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACaa                                    >  1:1574510/1‑141 (MQ=255)
                                                                                                           atGATTCAATATAATGCATAAAAAAACTGCTGGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACaaa                                   >  3:339176/1‑141 (MQ=255)
                                                                                                             gATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAg                                 >  1:222945/1‑141 (MQ=255)
                                                                                                             gATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAg                                 <  1:1591431/141‑1 (MQ=255)
                                                                                                               ttCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGtt                               <  4:408827/141‑1 (MQ=255)
                                                                                                                 cAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAtt                                                                           <  3:372121/95‑1 (MQ=255)
                                                                                                                     ataATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAattat                         <  3:408915/141‑1 (MQ=255)
                                                                                                                      taATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAattatt                        >  2:1373123/1‑141 (MQ=255)
                                                                                                                        aTGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTACACTTTACTTTGATTGTCATGACAAAAGTTAATTAtttt                      <  2:320095/141‑1 (MQ=255)
                                                                                                                          gCATAAAAAAACTGCTTGAtaggctaagaaacctttcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcat                    >  1:1511598‑M1/1‑19 (MQ=255)
                                                                                                                           cATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTcc                   <  1:1516584/141‑1 (MQ=255)
                                                                                                                             tAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCtt                 <  3:306468/141‑1 (MQ=255)
                                                                                                                                aaaaaCTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGt              <  1:270556/141‑1 (MQ=255)
                                                                                                                                 aaaaCTGCTTGAaaggtttcttagactatcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatg             >  2:806791‑M1/1‑12 (MQ=255)
                                                                                                                                  aaaCTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTCTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGttt            <  1:465481/141‑1 (MQ=255)
                                                                                                                                   aaCTGCTTGAaaggtttcttagcctatcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgttagtttcccttttcaactattttaccatttatcatcacaatgat           >  2:1254448‑M1/1‑10 (MQ=255)
                                                                                                                                   aaCTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTtc           >  1:1537733/1‑141 (MQ=255)
                                                                                                                                     cTGCTTGAaaggtttcttagcctatcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatgatgg         <  3:455369‑M1/141‑134 (MQ=255)
                                                                                                                                     cTGCTTGATAGGCTAAGAAACCTTtcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatgatgg         <  3:151008‑M2/141‑118 (MQ=255)
                                                                                                                                     cTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTtcat         <  4:207071/141‑1 (MQ=255)
                                                                                                                                      tGCTTGATAGGCTAAGAAACCTTtcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatgatggt        <  1:793444‑M2/141‑119 (MQ=255)
                                                                                                                                         ttGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCaaa     <  4:36665/141‑1 (MQ=255)
                                                                                                                                         ttGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCaaa     <  1:675299/141‑1 (MQ=255)
                                                                                                                                         ttGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCaaa     >  1:50231/1‑141 (MQ=255)
                                                                                                                                          tGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAAt    >  1:531755/1‑141 (MQ=255)
                                                                                                                                            aaaggtttcttagcctatcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatgatggtctcaaa  >  2:924761‑M1/1‑1 (MQ=255)
                                                                                                                                            aTAGGCTAAGAAACCTTtcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatgatggtctcaaa  <  2:1646197‑M2/141‑125 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TAACTTTATTGTCACGTTTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGC  >  USA300TCH1516_ALE/759899‑760179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.