BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1533866 =	173 (0.950)	9 (0.050)	9/232	NT	5.7%	coding (219/588 nt)	USA300HOU_RS07480	hypothetical protein
*	?	USA300TCH1516_ALE	1533900 =	138 (0.830)	9 (0.050)	9/232	NT	5.7%	coding (185/588 nt)	USA300HOU_RS07480	hypothetical protein

Only 100 of 210 total aligned reads displayed.

ACTATTAAATCATCTAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACT  >  USA300TCH1516_ALE/1533726‑1534005

tttattgaatagttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaa                                                                                                                                             >  2:946704‑M1/141‑141 (MQ=255)

 ttattgaatatttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaaa                                                                                                                                            <  1:347637‑M1/2‑1 (MQ=255)

  tATTAAATCATCTAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAaattgaat                                                                                                                                           >  2:1171859/1‑141 (MQ=255)

   attgaatatttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAAtt                                                                                                                                          <  1:1629226‑M1/4‑1 (MQ=255)

    ttgaatatttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTg                                                                                                                                         <  1:284911‑M1/5‑1 (MQ=255)

    ttgaatatttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTg                                                                                                                                         >  2:1027205‑M1/137‑141 (MQ=255)

    ttgaatatttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTg                                                                                                                                         <  4:648692‑M1/5‑1 (MQ=255)

    ttAAATCATCTAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAaattgaattg                                                                                                                                         <  1:999701/141‑1 (MQ=255)

    ttAAATCATCTAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAaattgaattg                                                                                                                                         <  3:340048/141‑1 (MQ=255)

      gaatatttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTGCa                                                                                                                                       <  1:79689‑M1/7‑1 (MQ=255)

      aaaTCATCTAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCa                                                                                                                                       >  4:174946/1‑141 (MQ=255)

       aatatttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTGCAg                                                                                                                                      >  2:78859‑M1/134‑141 (MQ=255)

       aatatttactttttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTGCAg                                                                                                                                      >  2:1124103‑M1/134‑141 (MQ=255)

       aatatttacttgttcaatatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTGCAg                                                                                                                                      >  1:809840‑M1/134‑141 (MQ=255)

       aataatcTAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAg                                                                                                                                      >  4:354558/5‑141 (MQ=255)

           atcTAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGc                                                                                                                                  >  2:1095345/1‑141 (MQ=255)

             cTAGCCTTTGCTCACGCTTTGACACGTTTGCGACGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATCTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGt                                                                                                                                >  2:1380527/1‑141 (MQ=255)

              tAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCATAAGCGTg                                                                                                                               <  2:1067032/141‑1 (MQ=255)

              tAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTg                                                                                                                               >  1:177415/1‑141 (MQ=255)

                gCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGAc                                                                                                                             >  2:479615/1‑141 (MQ=255)

                gCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGAc                                                                                                                             >  4:473589/1‑141 (MQ=255)

                 ccTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACt                                                                                                                            <  2:83314/141‑1 (MQ=255)

                  tttcaatatcgatttaagtcgcgttttgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTGCAGAAGCGTGACtt                                                                                                                           >  3:507660‑M1/123‑141 (MQ=255)

                  cTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACtt                                                                                                                           <  2:1626270/141‑1 (MQ=255)

                   tttGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAAATTTATATTACGCTTAGTGAATTGAATTGCAGAAGCGTGACGTc                                                                                                                          >  1:895761/1‑141 (MQ=255)

                      gCTCATGCTTTGCCACGTTTGCGAAGTGAATTTGAATATCAAAAGAACAGTTATGATTAGCGATATAATCAAATATTTTATTTGTATTCACTTACTTTATATTATTATTAGTAATTTGAATTGCAGTAGCGTGACTTtccc                                                                                                                       >  4:293417/1‑140 (MQ=255)

                       cTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCg                                                                                                                                 >  2:62885/1‑130 (MQ=255)

                       cTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCg                                                                                                                                 <  1:62885/130‑1 (MQ=255)

                       cTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCAc                                                                                                                      <  1:1159917/141‑1 (MQ=255)

                       atatcgatttaagtcgcgtattgcagtttgggtgcttaactatataaaagtgaatgaggcgaaattggcaaacattcattttgtagatacaaaaattaatcatcatgaaacattagaAATTGCAGAAGCGTGACTTCCCAc                                                                                                                      >  2:960562‑M1/118‑141 (MQ=255)

                        tCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACt                                                                                                                     >  1:415715/1‑141 (MQ=255)

                           cGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCt                                                                                                                  >  1:849126/1‑141 (MQ=255)

                            gCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTg                                                                                                                 >  2:1500941/1‑141 (MQ=255)

                            gCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTg                                                                                                                 >  1:203679/1‑141 (MQ=255)

                              tttGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCa                                                                                                               <  1:1126568/141‑1 (MQ=255)

                                 gACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAAtt                                                                                                            >  2:369116/1‑141 (MQ=255)

                                 gACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAAtt                                                                                                            >  3:173548/1‑141 (MQ=255)

                                  acacGTTTGCGAAGTGAATTTGAATATCAAGACCGCAGGTTTAGGTCGTTTATTAAGCAAAGATGTCACTGGTATTCATTAACTGTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAAttt                                                                                                           <  3:637383/141‑1 (MQ=255)

                                   cacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATCATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                                          <  1:1605968/141‑1 (MQ=255)

                                   cacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                                          <  2:580032/141‑1 (MQ=255)

                                   cacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                                          >  2:423772/1‑141 (MQ=255)

                                       tttGCGACGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCCTTCACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                      <  3:420836/141‑1 (MQ=255)

                                       tttGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                      >  3:70270/1‑141 (MQ=255)

                                       tttGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                      >  1:43424/1‑141 (MQ=255)

                                        ttGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATg                                                                                                     <  2:911784/141‑1 (MQ=255)

                                         tGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGt                                                                                                    >  4:403279/1‑141 (MQ=255)

                                         tGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGt                                                                                                    <  1:369116/141‑1 (MQ=255)

                                           cGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGttt                                                                                                  >  1:609303/1‑141 (MQ=255)

                                             aaGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCa                                                                                                >  1:237010/1‑141 (MQ=255)

                                                   aTTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCAtgatga                                                                                          <  3:432165/141‑1 (MQ=255)

                                                   aTTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCAtgatga                                                                                          <  1:1144252/141‑1 (MQ=255)

                                                     ttGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGAtt                                                                                        <  1:219309/141‑1 (MQ=255)

                                                     ttGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGAATTCCCACTTCTGCAATTTCTAATGTTTCATGATGAtt                                                                                        >  4:320998/1‑141 (MQ=255)

                                                        aaTATCAAAAGCACACTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAt                                                                                     <  1:1378159/141‑1 (MQ=255)

                                                         atatCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAtt                                                                                    >  2:684264/1‑141 (MQ=255)

                                                         atatCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAtt                                                                                    >  1:1659149/1‑141 (MQ=255)

                                                           atCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATGTGTTTGGATTAACTGTATGTTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAtttt                                                                                  <  1:1485014/141‑1 (MQ=255)

                                                             cAAAAGCAAAGATATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTg                                                                                >  2:332936/1‑141 (MQ=255)

                                                               aaaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTa                                                                              <  1:363802/141‑1 (MQ=255)

                                                               aaaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTa                                                                              >  3:658859/1‑141 (MQ=255)

                                                                aaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTGATGTTTCATGATGATTAATTTTTGTAt                                                                             >  2:1641517/1‑141 (MQ=255)

                                                                aaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTAt                                                                             >  3:243633/1‑141 (MQ=255)

                                                                 aGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                      <  2:1111167/115‑1 (MQ=255)

                                                                 aGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATc                                                                            <  1:1418809/141‑1 (MQ=255)

                                                                  gCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCt                                                                           <  4:676704/141‑1 (MQ=255)

                                                                   cacaGTTATGATTAGCGATATAATCACATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTa                                                                          >  1:465652/1‑141 (MQ=255)

                                                                   cacaGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTa                                                                          >  1:1524502/1‑141 (MQ=255)

                                                                   cacaGTTAAGGTTAGCAATATAGACAAAGATTTCATTTGTATTCGTTAACTTTATCTTTAGCATATTAAATTGAATTGCAGAAGCTTGACTTCCCACTTCTACAATTTTTACTATTGAATGATGATCAATATTTGTATCtt                                                                          >  2:1650071/1‑140 (MQ=255)

                                                                      aGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACaa                                                                       >  2:284911/1‑141 (MQ=255)

                                                                           tGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAaatga                                                                  <  1:1452098/141‑1 (MQ=255)

                                                                                 gCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGttt                                                            >  2:825435/1‑141 (MQ=255)

                                                                                   gATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGc                                                          <  3:267296/141‑1 (MQ=255)

                                                                                          tCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTCGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCGAATTTc                                                   >  2:407675/1‑141 (MQ=255)

                                                                                          tCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTc                                                   >  2:373591/1‑141 (MQ=255)

                                                                                           cAAATATGTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCg                                                  <  2:1164456/141‑1 (MQ=255)

                                                                                                   tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTGATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                                          <  1:1641517/141‑1 (MQ=255)

                                                                                                   tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCAttt                                          >  1:766239/1‑140 (MQ=255)

                                                                                                   tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                                          <  4:260004/141‑1 (MQ=255)

                                                                                                    cATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCa                                         <  4:547305/141‑1 (MQ=255)

                                                                                                     aTTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAc                                        <  1:1500941/141‑1 (MQ=255)

                                                                                                     aTTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCATCATTCAc                                        >  2:52310/1‑141 (MQ=255)

                                                                                                        tGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACttt                                     >  2:1536735/1‑141 (MQ=255)

                                                                                                          tATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTta                                   >  2:754673/1‑141 (MQ=255)

                                                                                                             atacaaaaattaatcatcatgaaacattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTtatat                                <  2:447119‑M1/110‑1 (MQ=255)

                                                                                                                ttAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTACCAATTTCGCCTCATTCACTTTTATATAGt                             >  3:580295/1‑141 (MQ=255)

                                                                                                                   aCTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGAATTCCAACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGACTCATTCACTTTTCTCTAGTTaa                          >  2:984731/1‑141 (MQ=255)

                                                                                                                    cTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAg                         >  2:187580/1‑141 (MQ=255)

                                                                                                                      ttATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                       <  1:1205729/141‑1 (MQ=255)

                                                                                                                      ttATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                       <  1:939410/141‑1 (MQ=255)

                                                                                                                      ttATAGTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                       <  4:575662/141‑1 (MQ=255)

                                                                                                                        atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCTCCTCATTCACTTTTATATAGTTATGCAcc                     >  2:250267/1‑141 (MQ=255)

                                                                                                                        atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                       >  2:80933/1‑139 (MQ=255)

                                                                                                                        atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAcc                     >  2:125827/1‑141 (MQ=255)

                                                                                                                        atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAcc                     <  1:534749/141‑1 (MQ=255)

                                                                                                                        atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAcc                     >  1:783790/1‑141 (MQ=255)

                                                                                                                         tatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAccc                    <  1:1065737/141‑1 (MQ=255)

                                                                                                                          tcatcatgaaacattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGtt                                                             >  1:951776‑M1/19‑99 (MQ=255)

                                                                                                                                cTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGc             <  2:1266758/141‑1 (MQ=255)

                                                                                                                                cTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGc             <  3:36638/141‑1 (MQ=255)

                                                                                                                                          tgaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGAc   >  2:65720/1‑141 (MQ=255)

ACTATTAAATCATCTAGCCTTTGCTCACGCTTTGACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACT  >  USA300TCH1516_ALE/1533726‑1534005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.