New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2508438 =233 (1.280)11 (0.070) 8/232 NT 5.4% intergenic (+26/+81) USA300TCH1516_02393/narT Acid shock protein/putative nitrate transporter NarT
?USA300TCH1516_ALE 2508486 = 174 (1.040)intergenic (+74/+33) USA300TCH1516_02393/narT Acid shock protein/putative nitrate transporter NarT

Only 100 of 268 total aligned reads displayed.

TGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGC  >  USA300TCH1516_ALE/2508298‑2508578
                                                                                                                                            |                                                                                                                                            
 atcaagtcatttagcatttattttcttagcggtatttggatgtattgcattatttaccatgagtaatatatacaaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacaa                                                                                                                                             >  4:231383‑M1/140‑141 (MQ=255)
    gATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGc                                                                                                                                          <  1:1321556/141‑1 (MQ=255)
    gATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGc                                                                                                                                          <  1:1351033/141‑1 (MQ=255)
    aagtcatttagcatttattttcttagcggtatttggatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGc                                                                                                                                          <  2:828362‑M1/5‑1 (MQ=255)
      gtcatttagcatttattttcttagcggtatttggatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCt                                                                                                                                        >  2:1492667‑M1/135‑141 (MQ=255)
       tcatttagcatttattttcttagcggtatttggatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCtt                                                                                                                                       <  2:1017448‑M1/8‑1 (MQ=255)
       aaGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCtt                                                                                                                                       <  3:127816/141‑1 (MQ=255)
       aaGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCtt                                                                                                                                       <  3:417192/141‑1 (MQ=255)
         gCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTaa                                                                                                                                     >  3:416411/1‑141 (MQ=255)
         atttagcatttattttcttagcggtatttggatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCTTaa                                                                                                                                     <  4:31616‑M1/10‑1 (MQ=255)
         atttagcatttattttcttagcggtatttggatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCTTaa                                                                                                                                     <  3:31972‑M1/10‑1 (MQ=255)
         atttagcatttattttcttagcggtatttggatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCTTaa                                                                                                                                     <  1:272443‑M1/10‑1 (MQ=255)
            aCATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGt                                                                                                                                  >  1:381103/1‑141 (MQ=255)
             cATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTc                                                                                                                                 >  1:517360/1‑141 (MQ=255)
             cATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTc                                                                                                                                 >  1:955036/1‑141 (MQ=255)
               tatTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCAt                                                                                                                               <  1:402481/141‑1 (MQ=255)
                   aCTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTa                                                                                                                           >  2:1505993/1‑141 (MQ=255)
                   aCTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTa                                                                                                                           >  2:1602790/1‑141 (MQ=255)
                   aCTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTa                                                                                                                           >  2:303278/1‑141 (MQ=255)
                    cTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCGTCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTAc                                                                                                                          >  2:796561/1‑141 (MQ=255)
                    cTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAGTTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTAc                                                                                                                          <  1:507038/141‑1 (MQ=255)
                    cTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTAc                                                                                                                          >  3:380444/1‑141 (MQ=255)
                    cTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTAc                                                                                                                          <  1:180887/141‑1 (MQ=255)
                     tGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACg                                                                                                                         <  1:1283514/141‑1 (MQ=255)
                     tGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACg                                                                                                                         <  2:20174/141‑1 (MQ=255)
                     tGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACg                                                                                                                         <  2:113146/141‑1 (MQ=255)
                       cTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGaa                                                                                                                       <  1:296912/141‑1 (MQ=255)
                          gTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAatat                                                                                                                    <  1:933277/141‑1 (MQ=255)
                             ttGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTgc                                                                                                                 >  2:690191/1‑141 (MQ=255)
                              tGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTgcg                                                                                                                >  1:364100/1‑141 (MQ=255)
                              tGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTgcg                                                                                                                <  2:1550675/141‑1 (MQ=255)
                                aaaaTGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCa                                                                                                              <  3:484155/141‑1 (MQ=255)
                                aaaaTGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCa                                                                                                              <  2:1228735/141‑1 (MQ=255)
                                 aaaTGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCAt                                                                                                             <  2:1551207/141‑1 (MQ=255)
                                 aaaTGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCAt                                                                                                             >  1:1559824/1‑141 (MQ=255)
                                   tttggatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCTTAATGTCATGCTACGAATATTGCGCATGa                                                                                                           >  3:460143‑M1/106‑141 (MQ=255)
                                    tGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGat                                                                                                          >  1:828247/1‑141 (MQ=255)
                                    tGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGat                                                                                                          >  4:257802/1‑141 (MQ=255)
                                      ggatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCTTAATGTCATGCTACGAATATTGCGCATGatat                                                                                                        >  3:576866‑M1/103‑141 (MQ=255)
                                      ggTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGatat                                                                                                        <  3:90439/141‑1 (MQ=255)
                                      ggTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGatat                                                                                                        <  2:1071774/141‑1 (MQ=255)
                                      ggTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGatat                                                                                                        <  2:1314682/141‑1 (MQ=255)
                                       gatgtattgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATAtt                                                                                                       >  1:1582200‑M1/102‑141 (MQ=255)
                                        ttattaACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCCTAATATTa                                                                                                      >  4:637861/1‑141 (MQ=255)
                                        ttattaACCATTACCTTGCCTAAAATCAAACCAAGCAAGGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTGCTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTa                                                                                                      <  1:755337/141‑1 (MQ=255)
                                           ttaACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAgg                                                                                                   <  1:704353/141‑1 (MQ=255)
                                            attgcattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGc                                                                                                  >  1:1414759‑M1/97‑141 (MQ=255)
                                                cattatttaccatgcgtcatttataccaaaaagaatatggctcattgaaaaacggttgatatgtaatacatgccattcatttagttaaatacAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTg                                                                                              >  1:1657285‑M1/93‑141 (MQ=255)
                                                    aCCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTAtt                                                                                          <  1:342250/141‑1 (MQ=255)
                                                     ccTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTAtgc                                                                                         >  3:25264/1‑139 (MQ=255)
                                                     ccTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTAtgc                                                                                         >  2:250923/1‑139 (MQ=255)
                                                       ttGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTaa                                                                                       >  2:371385/1‑141 (MQ=255)
                                                          ccTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTa                                                                                    >  1:59240/1‑141 (MQ=255)
                                                           cTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTaa                                                                                   <  1:1097828/141‑1 (MQ=255)
                                                              aaaTCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAaatg                                                                                <  2:425961/141‑1 (MQ=255)
                                                                  cAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAaatgaatg                                                                            <  1:682812/141‑1 (MQ=255)
                                                                    aaCCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGc                                                                          >  1:81102/1‑141 (MQ=255)
                                                                     aCCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATTTTAATGCTTTGTATTTAACTAAATGATTGGCa                                                                         >  2:509819/1‑141 (MQ=255)
                                                                     aCCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCa                                                                         >  1:58573/1‑141 (MQ=255)
                                                                     aCCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCa                                                                         >  3:105846/1‑141 (MQ=255)
                                                                     aCCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATCTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGCTATTAAGGCTTTGTATTTAACTAAATGACTGGCa                                                                         >  2:1623791/1‑141 (MQ=255)
                                                                          gCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTAt                                                                    >  3:1762/1‑141 (MQ=255)
                                                                          gCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTAt                                                                    >  1:862533/1‑141 (MQ=255)
                                                                           cAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTAtt                                                                   <  1:636465/141‑1 (MQ=255)
                                                                             aTGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTAc                                                                 >  1:1011130/1‑141 (MQ=255)
                                                                              tGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACa                                                                <  2:527067/141‑1 (MQ=255)
                                                                               gAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACat                                                               >  3:286418/1‑141 (MQ=255)
                                                                                aaaCTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACata                                                              <  1:1182432/141‑1 (MQ=255)
                                                                                aaaCTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACata                                                              <  1:457004/141‑1 (MQ=255)
                                                                                   ctactTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCa                                                           <  2:1175890/141‑1 (MQ=255)
                                                                                   ctactTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCa                                                           <  2:1095391/141‑1 (MQ=255)
                                                                                    tactTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGTTTTGTATTTAACTAAATGAATGGCATGTATTACATATCaa                                                          <  2:1590170/141‑1 (MQ=255)
                                                                                       ttCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCg                                                       <  1:1501378/141‑1 (MQ=255)
                                                                                         catcaACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAat                                                                                                                      >  2:859031/1‑76 (MQ=255)
                                                                                         catcaACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGtt                                                     <  4:124138/141‑1 (MQ=255)
                                                                                            caACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGttttt                                                  <  1:787685/141‑1 (MQ=255)
                                                                                                 tCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATg                                             <  3:680316/141‑1 (MQ=255)
                                                                                                   tATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAg                                           >  2:1359029/1‑141 (MQ=255)
                                                                                                    aTTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTAtt                                                                                          >  2:582196/1‑93 (MQ=255)
                                                                                                    aTTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGc                                          >  1:1037859/1‑141 (MQ=255)
                                                                                                        cAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCata                                      <  4:264758/141‑1 (MQ=255)
                                                                                                            ttCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCt                                  <  4:380444/141‑1 (MQ=255)
                                                                                                              cATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCttt                                >  4:489025/1‑141 (MQ=255)
                                                                                                                 aGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGGTATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTg                             >  3:71769/1‑141 (MQ=255)
                                                                                                                 aGTTAAATTTAAAATGAATACACTACTAAAGCCTAAATGTCATGCTACGAATATTGCGCAAGATATTAAAGCTTTGTATTTAACTAAATGAATGGCATATATGACATATCAACCGATTTTCAATAAGCCATATTCTTTTTg                             >  1:413454/1‑141 (MQ=255)
                                                                                                                  gTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTgg                            <  4:572006/141‑1 (MQ=255)
                                                                                                                      aaTTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGtata                        >  3:472167/1‑141 (MQ=255)
                                                                                                                       aTTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTTAATGAGCCATATTCTTTTTGGTATaa                       >  2:1314385/1‑141 (MQ=255)
                                                                                                                       aTTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATaa                       >  2:624808/1‑141 (MQ=255)
                                                                                                                        tttAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATaaa                      <  3:651109/141‑1 (MQ=255)
                                                                                                                            aaaTGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATg                    >  1:1628849/1‑139 (MQ=255)
                                                                                                                             aaTGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACg                 <  2:381103/141‑1 (MQ=255)
                                                                                                                              aTGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATg                                                                                                            <  3:357129/49‑1 (MQ=255)
                                                                                                                              aTGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATg                                                                                                            >  4:357129/1‑49 (MQ=255)
                                                                                                                                gAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGATTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCAt              >  4:626347/1‑141 (MQ=255)
                                                                                                                                  aTACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATgg            >  3:88875/1‑141 (MQ=255)
                                                                                                                                    acacTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAgg                                                                                                   >  4:55738/1‑52 (MQ=255)
                                                                                                                                          ctaAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGc                                          <  2:744112/103‑1 (MQ=255)
                                                                                                                                            AAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGc  <  1:1218012‑M1/141‑1 (MQ=255)
                                                                                                                                            AAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGc  <  3:628783‑M1/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATTGCGCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGC  >  USA300TCH1516_ALE/2508298‑2508578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.